Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002306

Physical Location & Seq

Genomic Coordinates Reverse (-)

18108198 .. 18109334

Gene Structure 1137 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30367

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGCTAAGACCAGAGAACGATATCTTCTTCATTGTCAAGGCCTTTGCGGCCGGGGTGATTCTAGCGACTGCCTTCATTCACGTACTACCTGAGGCCTTTACGACCTTGACTTCACCATGTCTAAAAGAAAATCCATGGGGCAGATTCCCTTTCACAGGCTTTCTTTGCATGATGTCTGCCATCGGAACATTGATGGTTGATGCAATGGCAACTGGGTACTACAAAAGGTCAAGCTTGAAGTCATCCCAGGTGAGAATGGATGAAGAGAGCAGAGCTGGTCATGGTGCCACACAGGGTAGTAATGCTCATGACTCTGAAGAATTGAGATCAACATCAGAATTATTCAAGCACAGGGTCATTGCACAAGTGTTGGAGCTGGGAATTCTAGTCCATTCAGTTATAATTGGAATATCAGTGGGTGCATCCCAGGACACATATACAATAAAGCCTCTCCTGGTGGCTTTGTCTTTCCACCAGTTCTTTGAGGGCATTAGTCTTGGTGGCTGCATCTCTCAGTTCAAGTCTCTGTCTGAAGCCATAATGGCGGCATTTTTCTCCCTTACAACCCCCATTGGAATTGCAATTGGTATCGGAATATCAAATGTTTACAGTGAGACTAGCCCAACTGCTCTAATTGTTCAAGGGACTTTGAATTCAGCTGCAGCTGGAATTTTAATTTACATGGCTCTTGTTGACCTACTTGCAGCAGATTTCATGAGCCCTAGAATGCAAGGAAATATGAGGATTCAATTGGGGTCATATATTTCGCTTCTTCTAGGGACTGGCTGTATGTCTCTCTTGGCAAAATGGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0071944 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

271

Amino Acids

29.1

Weight (kDa)

6.29

Isoelectric Point (pI)

34.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	5 - 268	6.6e-70	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12750
fragaria_vesca	FvH4_3g12900 FvH4_3g14490 FvH4_3g14490
malus_domestica	MD05G1236500.v1.1 MD05G1236600.v1.1 MD05G1247200.v1.1 MD10G1227800.v1.1
prunus_persica	Prupe.4G117200_v2.0.a1 Prupe.4G129600_v2.0.a1 Prupe.4G129700_v2.0.a1
pyrus_communis	pycom05g21350 pycom05g22310 pycom10g19130
rosa_chinensis	RchiOBHm_Chr5g0021001 RchiOBHm_Chr5g0023861 RchiOBHm_Chr5g0023871
rosa_laevigata	RLG00000032576 RLG00000032741 RLG00000032742
rosa_multiflora	Rmu_sc0001372.1_g000002 Rmu_sc0001372.1_g000005 Rmu_ssc0000027.1_g000003 Rmu_ssc0000244.1_g000011
rosa_roxburghii	Rroxscaffold_1G00055380 Rroxscaffold_1G00057480
rosa_rugosa	Rorug05G0063700 Rorug05G0079800 Rorug05G0079900
rosa_samantha	Rh5AG153300 Rh5AG169900 Rh5AG170000 Rh5BG153000 Rh5BG167200 Rh5BG167300 Rh5CG165600 Rh5CG182800 Rh5DG152400 Rh5DG169300
rosa_wichuraiana	Rw5G013620 Rw5G015360 Rw5G015370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	401
AccB1I	GGYRCC	1 cut(s)	284
AciI	CCGC	2 cut(s)	47, 545
AcoI	YGGCCR	1 cut(s)	48
AcsI	RAATTY	3 cut(s)	381, 652, 669
AcuI	CTGAAG	2 cut(s)	336, 552
AfaI	GTAC	2 cut(s)	84, 218
AfiI	CCNNNNNNNGG	1 cut(s)	155
AgsI	TTSAA	6 cut(s)	238, 346, 520, 641, 652, 749
AjnI	CCWGG	3 cut(s)	246, 426, 453
AluBI	AGCT	5 cut(s)	234, 275, 376, 659, 665
AluI	AGCT	5 cut(s)	234, 275, 376, 659, 665
Alw26I	GTCTC	3 cut(s)	528, 608, 798
AoxI	GGCC	3 cut(s)	39, 48, 93
ApeKI	GCWGC	4 cut(s)	504, 659, 662, 704
ApoI	RAATTY	3 cut(s)	381, 652, 669
AsuC2I	CCSGG	1 cut(s)	52
AsuHPI	GGTGA	3 cut(s)	67, 105, 262
AxyI	CCTNAGG	1 cut(s)	90
BanI	GGYRCC	1 cut(s)	284
BanII	GRGCYC	1 cut(s)	722
BbvI	GCAGC	4 cut(s)	491, 646, 674, 716
BccI	CCATC	2 cut(s)	187, 188
BciT130I	CCWGG	3 cut(s)	248, 428, 455
BcnI	CCSGG	1 cut(s)	52
BcoDI	GTCTC	3 cut(s)	528, 608, 798
BfaI	CTAG	5 cut(s)	62, 386, 618, 723, 776
BfmI	CTRYAG	1 cut(s)	660
BglI	GCCNNNNNGGC	2 cut(s)	47, 542
BisI	GCNGC	6 cut(s)	48, 505, 546, 660, 663, 705
BlsI	GCNGC	6 cut(s)	49, 506, 547, 661, 664, 706
Bme1390I	CCNGG	4 cut(s)	52, 248, 428, 455
BmiI	GGNNCC	1 cut(s)	286
BmrFI	CCNGG	4 cut(s)	52, 248, 428, 455
BmrI	ACTGGG	1 cut(s)	222
BmsI	GCATC	3 cut(s)	190, 431, 516
BmuI	ACTGGG	1 cut(s)	222
BpuMI	CCSGG	1 cut(s)	52
BsaAI	YACGTR	1 cut(s)	82
BsaBI	GATNNNNATC	1 cut(s)	331
BsaJI	CCNNGG	4 cut(s)	51, 134, 246, 426
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
Bse1I	ACTGG	3 cut(s)	217, 475, 787
Bse21I	CCTNAGG	1 cut(s)	90
Bse3DI	GCAATG	2 cut(s)	210, 357
Bse8I	GATNNNNATC	1 cut(s)	331
BseBI	CCWGG	3 cut(s)	248, 428, 455
BseDI	CCNNGG	4 cut(s)	51, 134, 246, 426
BseGI	GGATG	3 cut(s)	242, 265, 422
BseJI	GATNNNNATC	1 cut(s)	331
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseMI	GCAATG	2 cut(s)	210, 357
BseMII	CTCAG	2 cut(s)	81, 527
BseNI	ACTGG	3 cut(s)	217, 475, 787
BseX3I	CGGCCG	1 cut(s)	48
BseXI	GCAGC	4 cut(s)	491, 646, 674, 716
BseYI	CCCAGC	1 cut(s)	376
Bsh1285I	CGRYCG	1 cut(s)	51
BshFI	GGCC	3 cut(s)	41, 50, 95
BshNI	GGYRCC	1 cut(s)	284
BsiEI	CGRYCG	1 cut(s)	51
BsiSI	CCGG	1 cut(s)	51
BslFI	GGGAC	2 cut(s)	658, 793
BslI	CCNNNNNNNGG	1 cut(s)	155
BsmAI	GTCTC	3 cut(s)	528, 608, 798
BsmFI	GGGAC	2 cut(s)	658, 793
BsmI	GAATGC	1 cut(s)	732
BsnI	GGCC	3 cut(s)	41, 50, 95
Bsp1286I	GDGCHC	1 cut(s)	722
Bsp143I	GATC	1 cut(s)	326
Bsp19I	CCATGG	1 cut(s)	134
BspACI	CCGC	2 cut(s)	47, 545
BspANI	GGCC	3 cut(s)	41, 50, 95
BspCNI	CTCAG	2 cut(s)	82, 526
BspHI	TCATGA	2 cut(s)	307, 714
BspLI	GGNNCC	1 cut(s)	286
BspMAI	CTGCAG	1 cut(s)	664
BspT107I	GGYRCC	1 cut(s)	284
BsrDI	GCAATG	2 cut(s)	210, 357
BsrI	ACTGG	3 cut(s)	217, 475, 787
BssECI	CCNNGG	4 cut(s)	51, 134, 246, 426
BssMI	GATC	1 cut(s)	326
BssT1I	CCWWGG	1 cut(s)	134
Bst2UI	CCWGG	3 cut(s)	248, 428, 455
Bst4CI	ACNGT	1 cut(s)	611
Bst6I	CTCTTC	1 cut(s)	258
BstBAI	YACGTR	1 cut(s)	82
BstDEI	CTNAG	3 cut(s)	5, 90, 513
BstDSI	CCRYGG	1 cut(s)	134
BstENI	CCTNNNNNAGG	1 cut(s)	153
BstF5I	GGATG	3 cut(s)	242, 265, 422
BstKTI	GATC	1 cut(s)	329
BstMAI	GTCTC	3 cut(s)	528, 608, 798
BstMBI	GATC	1 cut(s)	326
BstMCI	CGRYCG	1 cut(s)	51
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 165, 542, 809
BstNI	CCWGG	3 cut(s)	248, 428, 455
BstSCI	CCNGG	4 cut(s)	50, 246, 426, 453
BstSFI	CTRYAG	1 cut(s)	660
BstV1I	GCAGC	4 cut(s)	491, 646, 674, 716
BstZI	CGGCCG	1 cut(s)	48
Bsu36I	CCTNAGG	1 cut(s)	90
BsuRI	GGCC	3 cut(s)	41, 50, 95
BtgI	CCRYGG	1 cut(s)	134
BtsCI	GGATG	3 cut(s)	242, 265, 422
BtsIMutI	CAGTG	2 cut(s)	420, 616
CciI	TCATGA	2 cut(s)	307, 714
Csp6I	GTAC	2 cut(s)	83, 217
CviAII	CATG	7 cut(s)	117, 135, 169, 281, 308, 682, 715
CviQI	GTAC	2 cut(s)	83, 217
DdeI	CTNAG	3 cut(s)	5, 90, 513
DpnI	GATC	1 cut(s)	328
DpnII	GATC	1 cut(s)	326
EaeI	YGGCCR	1 cut(s)	48
EagI	CGGCCG	1 cut(s)	48
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
EclXI	CGGCCG	1 cut(s)	48
Eco130I	CCWWGG	1 cut(s)	134
Eco147I	AGGCCT	2 cut(s)	41, 95
Eco24I	GRGCYC	1 cut(s)	722
Eco32I	GATATC	1 cut(s)	22
Eco52I	CGGCCG	1 cut(s)	48
Eco57I	CTGAAG	2 cut(s)	336, 552
Eco81I	CCTNAGG	1 cut(s)	90
EcoNI	CCTNNNNNAGG	1 cut(s)	153
EcoRI	GAATTC	2 cut(s)	381, 652
EcoRII	CCWGG	3 cut(s)	246, 426, 453
EcoRV	GATATC	1 cut(s)	22
EcoT14I	CCWWGG	1 cut(s)	134
EcoT38I	GRGCYC	1 cut(s)	722
ErhI	CCWWGG	1 cut(s)	134
FaeI	CATG	7 cut(s)	120, 138, 172, 284, 311, 685, 718
FaqI	GGGAC	2 cut(s)	658, 793
FatI	CATG	7 cut(s)	116, 134, 168, 280, 307, 681, 714
Fnu4HI	GCNGC	6 cut(s)	48, 505, 546, 660, 663, 705
FokI	GGATG	3 cut(s)	229, 272, 409
FriOI	GRGCYC	1 cut(s)	722
Fsp4HI	GCNGC	6 cut(s)	48, 505, 546, 660, 663, 705
FspBI	CTAG	5 cut(s)	62, 386, 618, 723, 776
GluI	GCNGC	6 cut(s)	48, 505, 546, 660, 663, 705
GsaI	CCCAGC	1 cut(s)	380
HaeIII	GGCC	3 cut(s)	41, 50, 95
HapII	CCGG	1 cut(s)	51
Hin1II	CATG	7 cut(s)	120, 138, 172, 284, 311, 685, 718
HincII	GTYRAC	1 cut(s)	694
HindII	GTYRAC	1 cut(s)	694
HindIII	AAGCTT	1 cut(s)	232
HinfI	GANTC	4 cut(s)	58, 144, 311, 745
HpaII	CCGG	1 cut(s)	51
HphI	GGTGA	3 cut(s)	67, 105, 262
Hpy166II	GTNNAC	2 cut(s)	607, 694
Hpy188I	TCNGA	5 cut(s)	185, 316, 337, 532, 593
Hpy188III	TCNNGA	2 cut(s)	308, 715
Hpy8I	GTNNAC	2 cut(s)	607, 694
HpyAV	CCTTC	1 cut(s)	82
HpyCH4III	ACNGT	1 cut(s)	611
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	9 cut(s)	168, 203, 362, 422, 507, 581, 662, 704, 730
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 165, 542, 809
HpyF3I	CTNAG	3 cut(s)	5, 90, 513
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	7 cut(s)	120, 138, 172, 284, 311, 685, 718
Kzo9I	GATC	1 cut(s)	326
LmnI	GCTCC	1 cut(s)	373
Lsp1109I	GCAGC	4 cut(s)	491, 646, 674, 716
LweI	GCATC	3 cut(s)	190, 431, 516
MaeI	CTAG	5 cut(s)	62, 386, 618, 723, 776
MaeII	ACGT	1 cut(s)	81
MalI	GATC	1 cut(s)	328
MboI	GATC	1 cut(s)	326
MboII	GAAGA	5 cut(s)	16, 19, 275, 329, 764
MfeI	CAATTG	2 cut(s)	582, 749
MhlI	GDGCHC	1 cut(s)	722
MlyI	GAGTC	1 cut(s)	305
MmeI	TCCRAC	1 cut(s)	351
MnlI	CCTC	4 cut(s)	85, 459, 478, 735
MseI	TTAA	1 cut(s)	674
MspA1I	CMGCKG	2 cut(s)	659, 665
MspI	CCGG	1 cut(s)	51
MspR9I	CCNGG	4 cut(s)	52, 248, 428, 455
MunI	CAATTG	2 cut(s)	582, 749
Mva1269I	GAATGC	1 cut(s)	732
MvaI	CCWGG	3 cut(s)	248, 428, 455
MwoI	GCNNNNNNNGC	4 cut(s)	47, 165, 542, 809
NciI	CCSGG	1 cut(s)	52
NcoI	CCATGG	1 cut(s)	134
NdeII	GATC	1 cut(s)	326
NlaIII	CATG	7 cut(s)	120, 138, 172, 284, 311, 685, 718
NlaIV	GGNNCC	1 cut(s)	286
PagI	TCATGA	2 cut(s)	307, 714
PceI	AGGCCT	2 cut(s)	41, 95
PctI	GAATGC	1 cut(s)	732
PfeI	GAWTC	3 cut(s)	58, 144, 745
PkrI	GCNGC	6 cut(s)	49, 506, 547, 661, 664, 706
PleI	GAGTC	1 cut(s)	305
PpsI	GAGTC	1 cut(s)	305
Ppu21I	YACGTR	1 cut(s)	82
PsiI	TTATAA	1 cut(s)	401
Psp6I	CCWGG	3 cut(s)	246, 426, 453
PspFI	CCCAGC	1 cut(s)	376
PspGI	CCWGG	3 cut(s)	246, 426, 453
PspN4I	GGNNCC	1 cut(s)	286
PstI	CTGCAG	1 cut(s)	664
PvuII	CAGCTG	2 cut(s)	659, 665
RsaI	GTAC	2 cut(s)	84, 218
RsaNI	GTAC	2 cut(s)	83, 217
SaqAI	TTAA	1 cut(s)	674
SatI	GCNGC	6 cut(s)	48, 505, 546, 660, 663, 705
Sau3AI	GATC	1 cut(s)	326
SchI	GAGTC	1 cut(s)	305
ScrFI	CCNGG	4 cut(s)	52, 248, 428, 455
SduI	GDGCHC	1 cut(s)	722
SfaNI	GCATC	3 cut(s)	190, 431, 516
SfcI	CTRYAG	1 cut(s)	660
SfiI	GGCCNNNNNGGCC	1 cut(s)	47
SseBI	AGGCCT	2 cut(s)	41, 95
SsiI	CCGC	2 cut(s)	47, 545
SspMI	CTAG	5 cut(s)	62, 386, 618, 723, 776
StuI	AGGCCT	2 cut(s)	41, 95
StyD4I	CCNGG	4 cut(s)	50, 246, 426, 453
StyI	CCWWGG	1 cut(s)	134
TaaI	ACNGT	1 cut(s)	611
TaiI	ACGT	1 cut(s)	84
TauI	GCSGC	2 cut(s)	50, 548
TfiI	GAWTC	3 cut(s)	58, 144, 745
Tru1I	TTAA	1 cut(s)	674
Tru9I	TTAA	1 cut(s)	674
TscAI	CASTG	2 cut(s)	420, 616
TseI	GCWGC	4 cut(s)	504, 659, 662, 704
TspDTI	ATGAA	4 cut(s)	19, 64, 276, 703
TspRI	CASTG	2 cut(s)	420, 616
XagI	CCTNNNNNAGG	1 cut(s)	153
XapI	RAATTY	3 cut(s)	381, 652, 669
XspI	CTAG	5 cut(s)	62, 386, 618, 723, 776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.