Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002306

Physical Location & Seq

Genomic Coordinates Forward (+)

7714725 .. 7717540

Gene Structure 2816 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g12900.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGAGAAAGCTTACTCTATCTTCCACTCTTCTTCTTCTTCTTTTGCTTCTCGTCCCCATCTTGGTTTCTGCAGAATGTACTTGCAGTGATGAGTCCCAAGACCGCGACAAGGCGAAGGCTCTCAAGTTCAAGCTAGTTGCAATAAGTTCAATCCTCATAGCCAGTGCTATTGGTGTCTCTCTCCCAATGTTGGGCAAGAAAATCCCAACTTTGCGCCCCGAAAATGATATCTTCTTCATGATCAAAGCCTTTGCAGCTGGTGTGATACTAGCAACCGGGTTCATCCATGTCTTGCCGGATGCATTTGAAAGCTTAACAAGCCCCTGCCTCAGCCAAATGCCATGGGGGGATTTCCCATTTACCGGTTTCATTGCAATGGTTTCGGCTATAGGGACCATGATGATCGACACCTTTGCTACTAGCTATTATAGAAGATCACATTTCAACAAAGCACTGCCTGTGAAGGATGACCAAGAAATGAATGGGGTGCATGAGGGTCATGTTCATGTTCATACTCATGCCACACACGGCCATGCTCATGGATCAGACGCCATGGCCTTGGAGGATTCAGCGTCTTCTTTCGAGCTTGTCAGGCGTCGAATAATATCACAGGTCCTTGAGCTCGGAATTGTTGTTCATTCTGTGATCATTGGAGTATCTTTAGGTGCCTCTGAGAGTCCCAAGACAATCAAGCCTCTAGTTGCAGCCCTGACCTTCCATCAATTTTTTGAAGGCATGGGCCTTGGTGGGTGCATCTGTCAGGCTAAATTCAAGTCGAAGGCCATTGCAACAATGGTACTATTCTTCTCCCTCACCACCCCAATTGGGATAGTTGTTGGAATGGGGGTGTCAAGTTTCTACAAGGAGAATAGCAGTACTGCTCTGATTGTGGAAGGAGTATTCAACTCTGCTTCAGCTGGGATCCTAATCTACATGGCTCTGGTTGACCTTCTAGCAGCTGATTTTATGAATCCTAGAATGCAAGGGAATCTTAGGATCCAGCTTGGGGCTAATCTTTCACTTCTTCTAGGGTCAGGATGTATGTCTCTCTTGGCCAAATGGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0071944 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

356

Amino Acids

38.13

Weight (kDa)

7.71

Isoelectric Point (pI)

33.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	42 - 352	4.6e-83	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12750
fragaria_vesca	FvH4_3g12900 FvH4_3g14490 FvH4_3g14490
malus_domestica	MD05G1236500.v1.1 MD05G1236600.v1.1 MD05G1247200.v1.1 MD10G1227800.v1.1
prunus_persica	Prupe.4G117200_v2.0.a1 Prupe.4G129600_v2.0.a1 Prupe.4G129700_v2.0.a1
pyrus_communis	pycom05g21350 pycom05g22310 pycom10g19130
rosa_chinensis	RchiOBHm_Chr5g0021001 RchiOBHm_Chr5g0023861 RchiOBHm_Chr5g0023871
rosa_laevigata	RLG00000032576 RLG00000032741 RLG00000032742
rosa_multiflora	Rmu_sc0001372.1_g000002 Rmu_sc0001372.1_g000005 Rmu_ssc0000027.1_g000003 Rmu_ssc0000244.1_g000011
rosa_roxburghii	Rroxscaffold_1G00055380 Rroxscaffold_1G00057480
rosa_rugosa	Rorug05G0063700 Rorug05G0079800 Rorug05G0079900
rosa_samantha	Rh5AG153300 Rh5AG169900 Rh5AG170000 Rh5BG153000 Rh5BG167200 Rh5BG167300 Rh5CG165600 Rh5CG182800 Rh5DG152400 Rh5DG169300
rosa_wichuraiana	Rw5G013620 Rw5G015360 Rw5G015370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	665
AccII	CGCG	1 cut(s)	105
AciI	CCGC	1 cut(s)	103
AclWI	GGATC	5 cut(s)	550, 916, 929, 991, 1004
AcoI	YGGCCR	2 cut(s)	529, 1053
AcsI	RAATTY	1 cut(s)	767
AcuI	CTGAAG	1 cut(s)	897
AcyI	GRCGYC	2 cut(s)	549, 595
AfaI	GTAC	3 cut(s)	79, 798, 877
AfiI	CCNNNNNNNGG	7 cut(s)	61, 109, 190, 191, 362, 825, 1006
AgeI	ACCGGT	1 cut(s)	362
AgsI	TTSAA	7 cut(s)	130, 150, 308, 445, 731, 772, 904
AloI	GAACNNNNNNTCC	2 cut(s)	618, 650
Alw21I	GWGCWC	1 cut(s)	624
Alw26I	GTCTC	2 cut(s)	181, 1050
AlwI	GGATC	5 cut(s)	550, 916, 929, 991, 1004
AoxI	GGCC	5 cut(s)	529, 555, 739, 780, 1053
ApeKI	GCWGC	3 cut(s)	254, 704, 956
ApoI	RAATTY	1 cut(s)	767
AsiGI	ACCGGT	1 cut(s)	362
AspLEI	GCGC	1 cut(s)	216
AspS9I	GGNCC	3 cut(s)	393, 613, 739
AsuC2I	CCSGG	1 cut(s)	277
AsuHPI	GGTGA	1 cut(s)	805
AvaII	GGWCC	2 cut(s)	393, 613
BalI	TGGCCA	1 cut(s)	1055
BamHI	GGATCC	2 cut(s)	921, 996
BanI	GGYRCC	1 cut(s)	665
BanII	GRGCYC	1 cut(s)	624
BbsI	GAAGAC	1 cut(s)	567
Bbv12I	GWGCWC	1 cut(s)	624
BbvCI	CCTCAGC	1 cut(s)	329
BbvI	GCAGC	3 cut(s)	266, 716, 968
BccI	CCATC	2 cut(s)	65, 726
BceAI	ACGGC	1 cut(s)	544
BcgI	CGANNNNNNTGC	4 cut(s)	363, 395, 397, 429
BclI	TGATCA	2 cut(s)	240, 645
BcnI	CCSGG	1 cut(s)	277
BcoDI	GTCTC	2 cut(s)	181, 1050
BfaI	CTAG	7 cut(s)	134, 269, 420, 698, 953, 975, 1028
BfmI	CTRYAG	2 cut(s)	69, 387
BglI	GCCNNNNNGGC	1 cut(s)	1061
BisI	GCNGC	3 cut(s)	255, 705, 957
BlsI	GCNGC	3 cut(s)	256, 706, 958
BmcAI	AGTACT	1 cut(s)	877
Bme1390I	CCNGG	1 cut(s)	277
Bme18I	GGWCC	2 cut(s)	393, 613
BmgT120I	GGNCC	3 cut(s)	393, 613, 739
BmiI	GGNNCC	4 cut(s)	394, 667, 923, 998
BmrFI	CCNGG	1 cut(s)	277
BmsI	GCATC	2 cut(s)	289, 762
BpiI	GAAGAC	1 cut(s)	567
Bpu10I	CCTNAGC	1 cut(s)	329
BpuEI	CTTGAG	2 cut(s)	107, 638
BpuMI	CCSGG	1 cut(s)	277
BsaBI	GATNNNNATC	1 cut(s)	926
BsaHI	GRCGYC	2 cut(s)	549, 595
BsaJI	CCNNGG	4 cut(s)	341, 552, 558, 742
BsaWI	WCCGGW	1 cut(s)	362
Bsc4I	CCNNNNNNNGG	7 cut(s)	61, 109, 190, 191, 362, 825, 1006
Bse118I	RCCGGY	1 cut(s)	362
Bse1I	ACTGG	1 cut(s)	162
Bse3DI	GCAATG	3 cut(s)	369, 381, 783
Bse8I	GATNNNNATC	1 cut(s)	926
BseDI	CCNNGG	4 cut(s)	341, 552, 558, 742
BseGI	GGATG	4 cut(s)	282, 304, 472, 1043
BseJI	GATNNNNATC	1 cut(s)	926
BseLI	CCNNNNNNNGG	7 cut(s)	61, 109, 190, 191, 362, 825, 1006
BseMI	GCAATG	3 cut(s)	369, 381, 783
BseMII	CTCAG	2 cut(s)	343, 663
BseNI	ACTGG	1 cut(s)	162
BseXI	GCAGC	3 cut(s)	266, 716, 968
BseYI	CCCAGC	1 cut(s)	917
Bsh1236I	CGCG	1 cut(s)	105
BshFI	GGCC	5 cut(s)	531, 557, 741, 782, 1055
BshNI	GGYRCC	1 cut(s)	665
BshTI	ACCGGT	1 cut(s)	362
BsiHKAI	GWGCWC	1 cut(s)	624
BsiSI	CCGG	3 cut(s)	276, 296, 363
BslFI	GGGAC	4 cut(s)	38, 79, 406, 663
BslI	CCNNNNNNNGG	7 cut(s)	61, 109, 190, 191, 362, 825, 1006
BsmAI	GTCTC	2 cut(s)	181, 1050
BsmFI	GGGAC	4 cut(s)	38, 79, 406, 663
BsmI	GAATGC	1 cut(s)	984
BsnI	GGCC	5 cut(s)	531, 557, 741, 782, 1055
Bsp1286I	GDGCHC	1 cut(s)	624
Bsp143I	GATC	7 cut(s)	240, 402, 434, 542, 645, 921, 996
Bsp19I	CCATGG	2 cut(s)	341, 552
BspACI	CCGC	1 cut(s)	103
BspANI	GGCC	5 cut(s)	531, 557, 741, 782, 1055
BspCNI	CTCAG	2 cut(s)	342, 664
BspFNI	CGCG	1 cut(s)	105
BspHI	TCATGA	1 cut(s)	237
BspLI	GGNNCC	4 cut(s)	394, 667, 923, 998
BspMAI	CTGCAG	1 cut(s)	73
BspPI	GGATC	5 cut(s)	550, 916, 929, 991, 1004
BspT107I	GGYRCC	1 cut(s)	665
BsrDI	GCAATG	3 cut(s)	369, 381, 783
BsrFI	RCCGGY	1 cut(s)	362
BsrI	ACTGG	1 cut(s)	162
BssAI	RCCGGY	1 cut(s)	362
BssECI	CCNNGG	4 cut(s)	341, 552, 558, 742
BssMI	GATC	7 cut(s)	240, 402, 434, 542, 645, 921, 996
BssNI	GRCGYC	2 cut(s)	549, 595
BssT1I	CCWWGG	4 cut(s)	341, 552, 558, 742
Bst6I	CTCTTC	1 cut(s)	33
BstACI	GRCGYC	2 cut(s)	549, 595
BstDEI	CTNAG	3 cut(s)	329, 672, 992
BstDSI	CCRYGG	2 cut(s)	341, 552
BstF5I	GGATG	4 cut(s)	282, 304, 472, 1043
BstFNI	CGCG	1 cut(s)	105
BstHHI	GCGC	1 cut(s)	216
BstKTI	GATC	7 cut(s)	243, 405, 437, 545, 648, 924, 999
BstMAI	GTCTC	2 cut(s)	181, 1050
BstMBI	GATC	7 cut(s)	240, 402, 434, 542, 645, 921, 996
BstMWI	GCNNNNNNNGC	4 cut(s)	254, 318, 592, 1061
BstSCI	CCNGG	1 cut(s)	275
BstSFI	CTRYAG	2 cut(s)	69, 387
BstUI	CGCG	1 cut(s)	105
BstV1I	GCAGC	3 cut(s)	266, 716, 968
BstV2I	GAAGAC	1 cut(s)	567
BstX2I	RGATCY	2 cut(s)	921, 996
BstXI	CCANNNNNNTGG	2 cut(s)	539, 559
BstYI	RGATCY	2 cut(s)	921, 996
BsuRI	GGCC	5 cut(s)	531, 557, 741, 782, 1055
BtgI	CCRYGG	2 cut(s)	341, 552
BtsCI	GGATG	4 cut(s)	282, 304, 472, 1043
BtsI	GCAGTG	2 cut(s)	91, 452
BtsIMutI	CAGTG	3 cut(s)	91, 169, 452
CciI	TCATGA	1 cut(s)	237
CfoI	GCGC	1 cut(s)	216
Cfr10I	RCCGGY	1 cut(s)	362
Cfr13I	GGNCC	3 cut(s)	393, 613, 739
CseI	GACGC	3 cut(s)	557, 561, 584
Csp6I	GTAC	3 cut(s)	78, 797, 876
CspAI	ACCGGT	1 cut(s)	362
CspCI	CAANNNNNGTGG	2 cut(s)	805, 840
CviQI	GTAC	3 cut(s)	78, 797, 876
DdeI	CTNAG	3 cut(s)	329, 672, 992
DpnI	GATC	7 cut(s)	242, 404, 436, 544, 647, 923, 998
DpnII	GATC	7 cut(s)	240, 402, 434, 542, 645, 921, 996
EaeI	YGGCCR	2 cut(s)	529, 1053
Eam1104I	CTCTTC	1 cut(s)	33
EarI	CTCTTC	1 cut(s)	33
Ecl136II	GAGCTC	1 cut(s)	622
Eco130I	CCWWGG	4 cut(s)	341, 552, 558, 742
Eco24I	GRGCYC	1 cut(s)	624
Eco32I	GATATC	1 cut(s)	229
Eco47I	GGWCC	2 cut(s)	393, 613
Eco53kI	GAGCTC	1 cut(s)	622
Eco57I	CTGAAG	1 cut(s)	897
EcoICRI	GAGCTC	1 cut(s)	622
EcoO109I	RGGNCCY	1 cut(s)	613
EcoRV	GATATC	1 cut(s)	229
EcoT14I	CCWWGG	4 cut(s)	341, 552, 558, 742
EcoT22I	ATGCAT	1 cut(s)	304
EcoT38I	GRGCYC	1 cut(s)	624
ErhI	CCWWGG	4 cut(s)	341, 552, 558, 742
FalI	AAGNNNNNCTT	2 cut(s)	975, 1007
FaqI	GGGAC	4 cut(s)	38, 79, 406, 663
FbaI	TGATCA	2 cut(s)	240, 645
Fnu4HI	GCNGC	3 cut(s)	255, 705, 957
FokI	GGATG	4 cut(s)	269, 311, 479, 1050
FriOI	GRGCYC	1 cut(s)	624
Fsp4HI	GCNGC	3 cut(s)	255, 705, 957
FspBI	CTAG	7 cut(s)	134, 269, 420, 698, 953, 975, 1028
GlaI	GCGC	1 cut(s)	215
GluI	GCNGC	3 cut(s)	255, 705, 957
GsaI	CCCAGC	1 cut(s)	921
HaeIII	GGCC	5 cut(s)	531, 557, 741, 782, 1055
HapII	CCGG	3 cut(s)	276, 296, 363
HgaI	GACGC	3 cut(s)	557, 561, 584
HhaI	GCGC	1 cut(s)	216
Hin1I	GRCGYC	2 cut(s)	549, 595
Hin6I	GCGC	1 cut(s)	214
HinP1I	GCGC	1 cut(s)	214
HincII	GTYRAC	1 cut(s)	946
HindII	GTYRAC	1 cut(s)	946
HindIII	AAGCTT	2 cut(s)	8, 310
HinfI	GANTC	5 cut(s)	92, 566, 676, 970, 988
HpaII	CCGG	3 cut(s)	276, 296, 363
HphI	GGTGA	1 cut(s)	805
Hpy166II	GTNNAC	1 cut(s)	946
Hpy188I	TCNGA	4 cut(s)	547, 626, 673, 885
Hpy188III	TCNNGA	2 cut(s)	238, 1035
Hpy8I	GTNNAC	1 cut(s)	946
Hpy99I	CGWCG	1 cut(s)	600
HpyAV	CCTTC	7 cut(s)	109, 457, 724, 725, 772, 887, 959
HpyF10VI	GCNNNNNNNGC	4 cut(s)	254, 318, 592, 1061
HpyF3I	CTNAG	3 cut(s)	329, 672, 992
Hsp92I	GRCGYC	2 cut(s)	549, 595
HspAI	GCGC	1 cut(s)	214
Ksp22I	TGATCA	2 cut(s)	240, 645
Kzo9I	GATC	7 cut(s)	240, 402, 434, 542, 645, 921, 996
Lsp1109I	GCAGC	3 cut(s)	266, 716, 968
LweI	GCATC	2 cut(s)	289, 762
MaeI	CTAG	7 cut(s)	134, 269, 420, 698, 953, 975, 1028
MalI	GATC	7 cut(s)	242, 404, 436, 544, 647, 923, 998
MboI	GATC	7 cut(s)	240, 402, 434, 542, 645, 921, 996
MfeI	CAATTG	1 cut(s)	822
MflI	RGATCY	2 cut(s)	921, 996
MhlI	GDGCHC	1 cut(s)	624
MlsI	TGGCCA	1 cut(s)	1055
MluCI	AATT	4 cut(s)	627, 722, 767, 822
MluNI	TGGCCA	1 cut(s)	1055
MlyI	GAGTC	2 cut(s)	101, 685
MmeI	TCCRAC	1 cut(s)	817
MnlI	CCTC	7 cut(s)	164, 338, 487, 556, 679, 705, 821
Mox20I	TGGCCA	1 cut(s)	1055
Mph1103I	ATGCAT	1 cut(s)	304
MscI	TGGCCA	1 cut(s)	1055
MseI	TTAA	1 cut(s)	314
MslI	CAYNNNNRTG	5 cut(s)	374, 504, 516, 531, 537
Msp20I	TGGCCA	1 cut(s)	1055
MspA1I	CMGCKG	3 cut(s)	257, 917, 959
MspI	CCGG	3 cut(s)	276, 296, 363
MspR9I	CCNGG	1 cut(s)	277
MunI	CAATTG	1 cut(s)	822
Mva1269I	GAATGC	1 cut(s)	984
MvnI	CGCG	1 cut(s)	105
MwoI	GCNNNNNNNGC	4 cut(s)	254, 318, 592, 1061
NciI	CCSGG	1 cut(s)	277
NcoI	CCATGG	2 cut(s)	341, 552
NdeII	GATC	7 cut(s)	240, 402, 434, 542, 645, 921, 996
NlaIV	GGNNCC	4 cut(s)	394, 667, 923, 998
NsiI	ATGCAT	1 cut(s)	304
PagI	TCATGA	1 cut(s)	237
PctI	GAATGC	1 cut(s)	984
PfeI	GAWTC	3 cut(s)	566, 970, 988
PinAI	ACCGGT	1 cut(s)	362
PkrI	GCNGC	3 cut(s)	256, 706, 958
PleI	GAGTC	2 cut(s)	100, 684
PpsI	GAGTC	2 cut(s)	100, 684
PpuMI	RGGWCCY	1 cut(s)	613
Psp124BI	GAGCTC	1 cut(s)	624
Psp5II	RGGWCCY	1 cut(s)	613
PspFI	CCCAGC	1 cut(s)	917
PspN4I	GGNNCC	4 cut(s)	394, 667, 923, 998
PspPI	GGNCC	3 cut(s)	393, 613, 739
PspPPI	RGGWCCY	1 cut(s)	613
PstI	CTGCAG	1 cut(s)	73
PsuI	RGATCY	2 cut(s)	921, 996
PvuII	CAGCTG	3 cut(s)	257, 917, 959
RsaI	GTAC	3 cut(s)	79, 798, 877
RsaNI	GTAC	3 cut(s)	78, 797, 876
RseI	CAYNNNNRTG	5 cut(s)	374, 504, 516, 531, 537
SacI	GAGCTC	1 cut(s)	624
SaqAI	TTAA	1 cut(s)	314
SatI	GCNGC	3 cut(s)	255, 705, 957
Sau3AI	GATC	7 cut(s)	240, 402, 434, 542, 645, 921, 996
Sau96I	GGNCC	3 cut(s)	393, 613, 739
ScaI	AGTACT	1 cut(s)	877
SchI	GAGTC	2 cut(s)	101, 685
ScrFI	CCNGG	1 cut(s)	277
SduI	GDGCHC	1 cut(s)	624
SfaNI	GCATC	2 cut(s)	289, 762
SfcI	CTRYAG	2 cut(s)	69, 387
SinI	GGWCC	2 cut(s)	393, 613
SmiMI	CAYNNNNRTG	5 cut(s)	374, 504, 516, 531, 537
SmlI	CTYRAG	2 cut(s)	122, 617
SmoI	CTYRAG	2 cut(s)	122, 617
Sse9I	AATT	4 cut(s)	627, 722, 767, 822
SsiI	CCGC	1 cut(s)	103
SspMI	CTAG	7 cut(s)	134, 269, 420, 698, 953, 975, 1028
SstI	GAGCTC	1 cut(s)	624
StyD4I	CCNGG	1 cut(s)	275
StyI	CCWWGG	4 cut(s)	341, 552, 558, 742
TaqI	TCGA	4 cut(s)	405, 582, 598, 776
TasI	AATT	4 cut(s)	627, 722, 767, 822
TatI	WGTACW	2 cut(s)	77, 875
TfiI	GAWTC	3 cut(s)	566, 970, 988
Tru1I	TTAA	1 cut(s)	314
Tru9I	TTAA	1 cut(s)	314
TscAI	CASTG	3 cut(s)	91, 169, 459
TseI	GCWGC	3 cut(s)	254, 704, 956
TspDTI	ATGAA	8 cut(s)	226, 271, 358, 494, 494, 500, 626, 983
TspRI	CASTG	3 cut(s)	91, 169, 459
VpaK11BI	GGWCC	2 cut(s)	393, 613
XapI	RAATTY	1 cut(s)	767
XcmI	CCANNNNNNNNNTGG	2 cut(s)	479, 790
XspI	CTAG	7 cut(s)	134, 269, 420, 698, 953, 975, 1028
ZrmI	AGTACT	1 cut(s)	877
Zsp2I	ATGCAT	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.