Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002306

Physical Location & Seq

Genomic Coordinates Reverse (-)

18539258 .. 18540681

Gene Structure 1424 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032741

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGTTTATTCTTCAAGCTTCATCTTTGAACATGTTGAAGATAGTGGCATCAATTCTAATTCTTCTATTCCCCGCAATAGTATTTGGAGAGTGTACCTGTGAATCTGAAGACATACAGGACAACAACGATGAAGCACTAAAGTACAAGCTAGGCTCCATTGCTTCAATTCTTGTTTCGGGTGCTTTGGGGGTAAGTCTGCCGCTGCTAGGCAAGAAGATCCCAACTCTAAGACCCGAGAACGATATCTTCTTCATTGTCAAGGCCTTTGCGGCCGGGGTGATTCTAGCGACTGCCTTCATTCACATACTACCTGAAGCCTTTGAGACCTTGACTTCACCATGCCTACAAGAAAATCCATGGGGCAGATTCCCTTTCACAGGCTTTGTGTGTATGATGTCTGCCATCGGAACATTGATGGTTGATACAGTGGCAACTGGGTACTACAAAAGGTCAAGCTTTAAGTCAACCCAGGTGACAATGGATGTAGAGAGCATAGCTGGTCATGATCATGGTCATGCAGGTCATGTACATCATACTGTTCATACACATGGTGCCACACAGGGTACTAATGCTCATGGCTCTGAAGAATTGAGATCATCATCAGAATTAATCAGGCAGAGGGTCATTTCACAAGTGTTGGAGCTGGGGATTCTAGTCCATTCAGTTATAATTGGAATAACATTGGGTGCATCCCAAAACCCAGATACAATAAAGCCTCTCCTGGTGGCTCTGTCTTTCCATCAATTCTTTGAGGGCATCGGACTTGGTGGGTGCATCTCTCAGGCGAAGTTTAAGGCTCGGTCTGCAACCATAATGGCGGCATTTTTCTCCCTTACAACCCCCATTGGGATTGCAGTTTGTACCGGAATTTCAAGCGTTTACAGTGAGACTAGCCCAACTGCTCTAATTGTTCAAGGGACTTTGAATTCAGCTGCAGCTGGAATTTTAATTTACATGGCTCTTGTTGACCTACTTGCAGCAGATTTCATGAGCCCTAGAATGCAAGGAAATATGAGGATTCAATTGGGGTCATATATTTCGCTTCTTCTAGGGACTGGCTGTATGTCTCTCTTGGCAAAATGGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0071944 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

363

Amino Acids

38.62

Weight (kDa)

6.3

Isoelectric Point (pI)

37.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	47 - 359	5.5e-82	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12750
fragaria_vesca	FvH4_3g12900 FvH4_3g14490 FvH4_3g14490
malus_domestica	MD05G1236500.v1.1 MD05G1236600.v1.1 MD05G1247200.v1.1 MD10G1227800.v1.1
prunus_persica	Prupe.4G117200_v2.0.a1 Prupe.4G129600_v2.0.a1 Prupe.4G129700_v2.0.a1
pyrus_communis	pycom05g21350 pycom05g22310 pycom10g19130
rosa_chinensis	RchiOBHm_Chr5g0021001 RchiOBHm_Chr5g0023861 RchiOBHm_Chr5g0023871
rosa_laevigata	RLG00000032576 RLG00000032741 RLG00000032742
rosa_multiflora	Rmu_sc0001372.1_g000002 Rmu_sc0001372.1_g000005 Rmu_ssc0000027.1_g000003 Rmu_ssc0000244.1_g000011
rosa_roxburghii	Rroxscaffold_1G00055380 Rroxscaffold_1G00057480
rosa_rugosa	Rorug05G0063700 Rorug05G0079800 Rorug05G0079900
rosa_samantha	Rh5AG153300 Rh5AG169900 Rh5AG170000 Rh5BG153000 Rh5BG167200 Rh5BG167300 Rh5CG165600 Rh5CG182800 Rh5DG152400 Rh5DG169300
rosa_wichuraiana	Rw5G013620 Rw5G015360 Rw5G015370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	668
Acc36I	ACCTGC	1 cut(s)	509
AccB1I	GGYRCC	1 cut(s)	551
AciI	CCGC	4 cut(s)	72, 200, 269, 818
AclWI	GGATC	1 cut(s)	211
AcoI	YGGCCR	1 cut(s)	270
AcsI	RAATTY	3 cut(s)	867, 925, 942
AcuI	CTGAAG	3 cut(s)	126, 333, 603
AdeI	CACNNNGTG	1 cut(s)	551
AfaI	GTAC	6 cut(s)	94, 143, 440, 528, 565, 862
AfiI	CCNNNNNNNGG	3 cut(s)	206, 377, 846
AflIII	ACRYGT	1 cut(s)	30
AgsI	TTSAA	8 cut(s)	14, 28, 37, 165, 873, 914, 925, 1022
AjnI	CCWGG	2 cut(s)	468, 720
AluBI	AGCT	7 cut(s)	17, 148, 456, 497, 643, 932, 938
AluI	AGCT	7 cut(s)	17, 148, 456, 497, 643, 932, 938
Alw26I	GTCTC	3 cut(s)	317, 881, 1071
AlwI	GGATC	1 cut(s)	211
Ama87I	CYCGRG	1 cut(s)	233
AoxI	GGCC	2 cut(s)	261, 270
ApeKI	GCWGC	4 cut(s)	202, 932, 935, 977
ApoI	RAATTY	3 cut(s)	867, 925, 942
AseI	ATTAAT	1 cut(s)	608
AsuC2I	CCSGG	1 cut(s)	274
AsuHPI	GGTGA	3 cut(s)	289, 327, 484
AvaI	CYCGRG	1 cut(s)	233
BanI	GGYRCC	1 cut(s)	551
BanII	GRGCYC	1 cut(s)	995
BbsI	GAAGAC	1 cut(s)	114
BbvI	GCAGC	4 cut(s)	189, 919, 947, 989
BccI	CCATC	3 cut(s)	409, 410, 747
BciT130I	CCWGG	2 cut(s)	470, 722
BclI	TGATCA	1 cut(s)	505
BcnI	CCSGG	1 cut(s)	274
BcoDI	GTCTC	3 cut(s)	317, 881, 1071
BfaI	CTAG	7 cut(s)	149, 206, 284, 653, 891, 996, 1049
BfmI	CTRYAG	1 cut(s)	933
BfuAI	ACCTGC	1 cut(s)	509
BglI	GCCNNNNNGGC	1 cut(s)	269
BisI	GCNGC	7 cut(s)	200, 203, 270, 819, 933, 936, 978
BlsI	GCNGC	7 cut(s)	201, 204, 271, 820, 934, 937, 979
Bme1390I	CCNGG	3 cut(s)	274, 470, 722
BmeT110I	CYCGRG	1 cut(s)	233
BmiI	GGNNCC	2 cut(s)	154, 553
BmrFI	CCNGG	3 cut(s)	274, 470, 722
BmrI	ACTGGG	1 cut(s)	444
BmsI	GCATC	4 cut(s)	56, 698, 765, 783
BmuI	ACTGGG	1 cut(s)	444
BpiI	GAAGAC	1 cut(s)	114
BpuMI	CCSGG	1 cut(s)	274
BsaBI	GATNNNNATC	1 cut(s)	598
BsaI	GGTCTC	1 cut(s)	317
BsaJI	CCNNGG	3 cut(s)	273, 356, 468
BsaWI	WCCGGW	1 cut(s)	863
Bsc4I	CCNNNNNNNGG	3 cut(s)	206, 377, 846
Bse1I	ACTGG	2 cut(s)	439, 1060
Bse3DI	GCAATG	1 cut(s)	156
Bse8I	GATNNNNATC	1 cut(s)	598
BseBI	CCWGG	2 cut(s)	470, 722
BseDI	CCNNGG	3 cut(s)	273, 356, 468
BseGI	GGATG	2 cut(s)	487, 689
BseJI	GATNNNNATC	1 cut(s)	598
BseLI	CCNNNNNNNGG	3 cut(s)	206, 377, 846
BseMI	GCAATG	1 cut(s)	156
BseMII	CTCAG	1 cut(s)	794
BseNI	ACTGG	2 cut(s)	439, 1060
BseX3I	CGGCCG	1 cut(s)	270
BseXI	GCAGC	4 cut(s)	189, 919, 947, 989
BseYI	CCCAGC	1 cut(s)	643
Bsh1285I	CGRYCG	1 cut(s)	273
BshFI	GGCC	2 cut(s)	263, 272
BshNI	GGYRCC	1 cut(s)	551
BsiEI	CGRYCG	1 cut(s)	273
BsiHKCI	CYCGRG	1 cut(s)	233
BsiSI	CCGG	2 cut(s)	273, 864
BslFI	GGGAC	2 cut(s)	931, 1066
BslI	CCNNNNNNNGG	3 cut(s)	206, 377, 846
BsmAI	GTCTC	3 cut(s)	317, 881, 1071
BsmFI	GGGAC	2 cut(s)	931, 1066
BsmI	GAATGC	1 cut(s)	1005
BsnI	GGCC	2 cut(s)	263, 272
Bso31I	GGTCTC	1 cut(s)	317
BsoBI	CYCGRG	1 cut(s)	233
Bsp1286I	GDGCHC	1 cut(s)	995
Bsp1407I	TGTACA	1 cut(s)	526
Bsp143I	GATC	3 cut(s)	216, 505, 593
Bsp19I	CCATGG	1 cut(s)	356
BspACI	CCGC	4 cut(s)	72, 200, 269, 818
BspANI	GGCC	2 cut(s)	263, 272
BspCNI	CTCAG	1 cut(s)	793
BspHI	TCATGA	2 cut(s)	502, 987
BspLI	GGNNCC	2 cut(s)	154, 553
BspMAI	CTGCAG	1 cut(s)	937
BspMI	ACCTGC	1 cut(s)	509
BspPI	GGATC	1 cut(s)	211
BspT107I	GGYRCC	1 cut(s)	551
BspTNI	GGTCTC	1 cut(s)	317
BsrDI	GCAATG	1 cut(s)	156
BsrGI	TGTACA	1 cut(s)	526
BsrI	ACTGG	2 cut(s)	439, 1060
BssECI	CCNNGG	3 cut(s)	273, 356, 468
BssMI	GATC	3 cut(s)	216, 505, 593
BssT1I	CCWWGG	1 cut(s)	356
Bst2UI	CCWGG	2 cut(s)	470, 722
Bst4CI	ACNGT	3 cut(s)	427, 538, 884
BstAUI	TGTACA	1 cut(s)	526
BstDEI	CTNAG	2 cut(s)	227, 780
BstDSI	CCRYGG	1 cut(s)	356
BstENI	CCTNNNNNAGG	1 cut(s)	375
BstF5I	GGATG	2 cut(s)	487, 689
BstKTI	GATC	3 cut(s)	219, 508, 596
BstMAI	GTCTC	3 cut(s)	317, 881, 1071
BstMBI	GATC	3 cut(s)	216, 505, 593
BstMCI	CGRYCG	1 cut(s)	273
BstMWI	GCNNNNNNNGC	3 cut(s)	269, 803, 1082
BstNI	CCWGG	2 cut(s)	470, 722
BstNSI	RCATGY	1 cut(s)	34
BstSCI	CCNGG	3 cut(s)	272, 468, 720
BstSFI	CTRYAG	1 cut(s)	933
BstV1I	GCAGC	4 cut(s)	189, 919, 947, 989
BstV2I	GAAGAC	1 cut(s)	114
BstX2I	RGATCY	1 cut(s)	216
BstYI	RGATCY	1 cut(s)	216
BstZI	CGGCCG	1 cut(s)	270
BsuRI	GGCC	2 cut(s)	263, 272
BtgI	CCRYGG	1 cut(s)	356
BtsCI	GGATG	2 cut(s)	487, 689
BtsIMutI	CAGTG	2 cut(s)	432, 889
BveI	ACCTGC	1 cut(s)	509
CciI	TCATGA	2 cut(s)	502, 987
Csp6I	GTAC	6 cut(s)	93, 142, 439, 527, 564, 861
CviQI	GTAC	6 cut(s)	93, 142, 439, 527, 564, 861
DdeI	CTNAG	2 cut(s)	227, 780
DpnI	GATC	3 cut(s)	218, 507, 595
DpnII	GATC	3 cut(s)	216, 505, 593
DraIII	CACNNNGTG	1 cut(s)	551
EaeI	YGGCCR	1 cut(s)	270
EagI	CGGCCG	1 cut(s)	270
EclXI	CGGCCG	1 cut(s)	270
Eco130I	CCWWGG	1 cut(s)	356
Eco147I	AGGCCT	1 cut(s)	263
Eco24I	GRGCYC	1 cut(s)	995
Eco31I	GGTCTC	1 cut(s)	317
Eco32I	GATATC	1 cut(s)	244
Eco52I	CGGCCG	1 cut(s)	270
Eco57I	CTGAAG	3 cut(s)	126, 333, 603
Eco88I	CYCGRG	1 cut(s)	233
EcoNI	CCTNNNNNAGG	1 cut(s)	375
EcoRI	GAATTC	1 cut(s)	925
EcoRII	CCWGG	2 cut(s)	468, 720
EcoRV	GATATC	1 cut(s)	244
EcoT14I	CCWWGG	1 cut(s)	356
EcoT38I	GRGCYC	1 cut(s)	995
ErhI	CCWWGG	1 cut(s)	356
FaqI	GGGAC	2 cut(s)	931, 1066
FauI	CCCGC	1 cut(s)	79
FbaI	TGATCA	1 cut(s)	505
Fnu4HI	GCNGC	7 cut(s)	200, 203, 270, 819, 933, 936, 978
FokI	GGATG	2 cut(s)	494, 676
FriOI	GRGCYC	1 cut(s)	995
Fsp4HI	GCNGC	7 cut(s)	200, 203, 270, 819, 933, 936, 978
FspBI	CTAG	7 cut(s)	149, 206, 284, 653, 891, 996, 1049
GluI	GCNGC	7 cut(s)	200, 203, 270, 819, 933, 936, 978
GsaI	CCCAGC	1 cut(s)	647
HaeIII	GGCC	2 cut(s)	263, 272
HapII	CCGG	2 cut(s)	273, 864
HincII	GTYRAC	2 cut(s)	465, 967
HindII	GTYRAC	2 cut(s)	465, 967
HindIII	AAGCTT	2 cut(s)	15, 454
HinfI	GANTC	5 cut(s)	101, 280, 366, 649, 1018
HpaII	CCGG	2 cut(s)	273, 864
HphI	GGTGA	3 cut(s)	289, 327, 484
Hpy166II	GTNNAC	4 cut(s)	93, 465, 880, 967
Hpy188I	TCNGA	5 cut(s)	106, 407, 583, 604, 761
Hpy188III	TCNNGA	2 cut(s)	503, 988
Hpy8I	GTNNAC	4 cut(s)	93, 465, 880, 967
HpyAV	CCTTC	1 cut(s)	304
HpyCH4III	ACNGT	3 cut(s)	427, 538, 884
HpyCH4V	TGCA	8 cut(s)	518, 689, 774, 806, 854, 935, 977, 1003
HpyF10VI	GCNNNNNNNGC	3 cut(s)	269, 803, 1082
HpyF3I	CTNAG	2 cut(s)	227, 780
Ksp22I	TGATCA	1 cut(s)	505
Kzo9I	GATC	3 cut(s)	216, 505, 593
LmnI	GCTCC	2 cut(s)	158, 640
Lsp1109I	GCAGC	4 cut(s)	189, 919, 947, 989
LweI	GCATC	4 cut(s)	56, 698, 765, 783
MaeI	CTAG	7 cut(s)	149, 206, 284, 653, 891, 996, 1049
MaeIII	GTNAC	1 cut(s)	472
MalI	GATC	3 cut(s)	218, 507, 595
MboI	GATC	3 cut(s)	216, 505, 593
MboII	GAAGA	8 cut(s)	49, 53, 119, 226, 238, 241, 596, 1037
MfeI	CAATTG	1 cut(s)	1022
MflI	RGATCY	1 cut(s)	216
MhlI	GDGCHC	1 cut(s)	995
MmeI	TCCRAC	1 cut(s)	618
MnlI	CCTC	4 cut(s)	612, 726, 745, 1008
MseI	TTAA	4 cut(s)	459, 608, 792, 947
MslI	CAYNNNNRTG	3 cut(s)	507, 513, 546
MspA1I	CMGCKG	3 cut(s)	202, 932, 938
MspI	CCGG	2 cut(s)	273, 864
MspR9I	CCNGG	3 cut(s)	274, 470, 722
MunI	CAATTG	1 cut(s)	1022
Mva1269I	GAATGC	1 cut(s)	1005
MvaI	CCWGG	2 cut(s)	470, 722
MwoI	GCNNNNNNNGC	3 cut(s)	269, 803, 1082
NciI	CCSGG	1 cut(s)	274
NcoI	CCATGG	1 cut(s)	356
NdeII	GATC	3 cut(s)	216, 505, 593
NlaIV	GGNNCC	2 cut(s)	154, 553
NmuCI	GTSAC	1 cut(s)	472
NspI	RCATGY	1 cut(s)	34
PagI	TCATGA	2 cut(s)	502, 987
PceI	AGGCCT	1 cut(s)	263
PciI	ACATGT	1 cut(s)	30
PctI	GAATGC	1 cut(s)	1005
PfeI	GAWTC	5 cut(s)	101, 280, 366, 649, 1018
PkrI	GCNGC	7 cut(s)	201, 204, 271, 820, 934, 937, 979
PscI	ACATGT	1 cut(s)	30
PshBI	ATTAAT	1 cut(s)	608
PsiI	TTATAA	1 cut(s)	668
Psp6I	CCWGG	2 cut(s)	468, 720
PspFI	CCCAGC	1 cut(s)	643
PspGI	CCWGG	2 cut(s)	468, 720
PspN4I	GGNNCC	2 cut(s)	154, 553
PstI	CTGCAG	1 cut(s)	937
PsuI	RGATCY	1 cut(s)	216
PvuII	CAGCTG	2 cut(s)	932, 938
RsaI	GTAC	6 cut(s)	94, 143, 440, 528, 565, 862
RsaNI	GTAC	6 cut(s)	93, 142, 439, 527, 564, 861
RseI	CAYNNNNRTG	3 cut(s)	507, 513, 546
SaqAI	TTAA	4 cut(s)	459, 608, 792, 947
SatI	GCNGC	7 cut(s)	200, 203, 270, 819, 933, 936, 978
Sau3AI	GATC	3 cut(s)	216, 505, 593
ScrFI	CCNGG	3 cut(s)	274, 470, 722
SduI	GDGCHC	1 cut(s)	995
SfaNI	GCATC	4 cut(s)	56, 698, 765, 783
SfcI	CTRYAG	1 cut(s)	933
SfiI	GGCCNNNNNGGCC	1 cut(s)	269
SmiMI	CAYNNNNRTG	3 cut(s)	507, 513, 546
SseBI	AGGCCT	1 cut(s)	263
SsiI	CCGC	4 cut(s)	72, 200, 269, 818
SspMI	CTAG	7 cut(s)	149, 206, 284, 653, 891, 996, 1049
StuI	AGGCCT	1 cut(s)	263
StyD4I	CCNGG	3 cut(s)	272, 468, 720
StyI	CCWWGG	1 cut(s)	356
TaaI	ACNGT	3 cut(s)	427, 538, 884
TaqII	GACCGA	1 cut(s)	789
TatI	WGTACW	2 cut(s)	141, 526
TauI	GCSGC	3 cut(s)	202, 272, 821
TfiI	GAWTC	5 cut(s)	101, 280, 366, 649, 1018
Tru1I	TTAA	4 cut(s)	459, 608, 792, 947
Tru9I	TTAA	4 cut(s)	459, 608, 792, 947
TscAI	CASTG	2 cut(s)	432, 889
TseFI	GTSAC	1 cut(s)	472
TseI	GCWGC	4 cut(s)	202, 932, 935, 977
Tsp45I	GTSAC	1 cut(s)	472
TspDTI	ATGAA	6 cut(s)	9, 144, 241, 286, 530, 976
TspRI	CASTG	2 cut(s)	432, 889
VspI	ATTAAT	1 cut(s)	608
XagI	CCTNNNNNAGG	1 cut(s)	375
XapI	RAATTY	3 cut(s)	867, 925, 942
XceI	RCATGY	1 cut(s)	34
XspI	CTAG	7 cut(s)	149, 206, 284, 653, 891, 996, 1049

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.