Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002306

Physical Location & Seq

Genomic Coordinates Reverse (-)

8938296 .. 8939970

Gene Structure 1675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g14490.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGTTTATTCTTCAAGCTTCATCTATGAACATGTTGAAGATAGTGGCATCAGTTCTAATTCTTCTATTCCCCACAGTAGTATTTGGGGAGTGCACCTGTGAATCTGAAGACACACAGGACCACAACAATGAAGCACTAAAATACAAGCTAGGCTCCATTGCTTCAATTCTTGTTTCTGGTGCTTTGGGGGTGAGTCTGCCACTGCTAGGCAAGAAGATCCCAGCTCTGAGACCCGAGAACAATATCTTCTTCATTGTCAAGGCATTTGCGGCCGGTGTGATTCTAGCAACTGCCTTCATTCACATACTACCTGATGCCTTTGAGACCTTGACTTCACCATGCCTAAAAGAAAATCCATGGGGCAAATTCCCCTTCACAGGCTTTGTGTGTATGATGTCTGCCATTGGAACATTAATGGTTGATGCAATGGCAACTGGCTACTACAAAAGCTCAAGCTTAAAGAGAACCCAGGTGACAGATGATGATGAAGAGAGCAGAGTTGGTCATGATCATGGTCATGCAGGTCATGCACATGGTCATACACATGGTGCCACACAGCAGGCTAGTAATGCTCATGGCTCTGAAGAATTGAAATCATCAGAATTAATCAGGCACAGGGTCATTTCACAAGTGTTGGAGCTGGGAATTTTAGTCCATTCAGTTATAATTGGAATAACATTGGGAGTATCCCAAAACCCAGATACGATAAAGCCTCTCCTGGTAGCTTTGTCTTTCCATCAATTCTTTGAGGGCATTGGACTTGGTGGCTGTATCTCTCAGGCGCAATTCAAGTCTCGGTCTGCAGCGATAATGGCGGCATTTTTCTCCCTTACAACCCCCATTGGAATTGCAGTTGGTACCGCAATTTCAAGAGTTTACAGTGAGACTAGCCCGACTGCTCTAATTGTTCAAGGGACTTTGGAATCAGCTGCAGCTGGGATTTTAATTTACATGGCTCTTGTTGACCTACTTGCAGCAGATTTCATGAGCCCTAGAATGCAAGGAAATAGGAGGATTCAATTGGGGTCATATATCTCTCTTCTTCTAGGGACTGGCTGTATGTCTTTCTTGGCAAAATGGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0071944 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

362

Amino Acids

38.58

Weight (kDa)

6.49

Isoelectric Point (pI)

37.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	47 - 358	1.4e-85	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12750
fragaria_vesca	FvH4_3g12900 FvH4_3g14490 FvH4_3g14490
malus_domestica	MD05G1236500.v1.1 MD05G1236600.v1.1 MD05G1247200.v1.1 MD10G1227800.v1.1
prunus_persica	Prupe.4G117200_v2.0.a1 Prupe.4G129600_v2.0.a1 Prupe.4G129700_v2.0.a1
pyrus_communis	pycom05g21350 pycom05g22310 pycom10g19130
rosa_chinensis	RchiOBHm_Chr5g0021001 RchiOBHm_Chr5g0023861 RchiOBHm_Chr5g0023871
rosa_laevigata	RLG00000032576 RLG00000032741 RLG00000032742
rosa_multiflora	Rmu_sc0001372.1_g000002 Rmu_sc0001372.1_g000005 Rmu_ssc0000027.1_g000003 Rmu_ssc0000244.1_g000011
rosa_roxburghii	Rroxscaffold_1G00055380 Rroxscaffold_1G00057480
rosa_rugosa	Rorug05G0063700 Rorug05G0079800 Rorug05G0079900
rosa_samantha	Rh5AG153300 Rh5AG169900 Rh5AG170000 Rh5BG153000 Rh5BG167200 Rh5BG167300 Rh5CG165600 Rh5CG182800 Rh5DG152400 Rh5DG169300
rosa_wichuraiana	Rw5G013620 Rw5G015360 Rw5G015370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	665
Acc36I	ACCTGC	1 cut(s)	512
Acc65I	GGTACC	1 cut(s)	857
AccB1I	GGYRCC	2 cut(s)	548, 857
AciI	CCGC	3 cut(s)	269, 815, 861
AclWI	GGATC	1 cut(s)	211
AcoI	YGGCCR	1 cut(s)	270
AcsI	RAATTY	2 cut(s)	365, 645
AcuI	CTGAAG	2 cut(s)	126, 603
AdeI	CACNNNGTG	1 cut(s)	548
AfaI	GTAC	1 cut(s)	859
AfiI	CCNNNNNNNGG	2 cut(s)	206, 377
AflIII	ACRYGT	1 cut(s)	30
AgsI	TTSAA	8 cut(s)	14, 37, 165, 592, 790, 870, 911, 1019
AjnI	CCWGG	2 cut(s)	468, 717
AluBI	AGCT	9 cut(s)	17, 148, 224, 450, 456, 640, 725, 929, 935
AluI	AGCT	9 cut(s)	17, 148, 224, 450, 456, 640, 725, 929, 935
Alw21I	GWGCWC	1 cut(s)	95
Alw26I	GTCTC	4 cut(s)	223, 317, 798, 878
Alw44I	GTGCAC	1 cut(s)	91
AlwI	GGATC	1 cut(s)	211
Ama87I	CYCGRG	1 cut(s)	233
AoxI	GGCC	1 cut(s)	270
ApaLI	GTGCAC	1 cut(s)	91
ApeKI	GCWGC	4 cut(s)	803, 929, 932, 974
ApoI	RAATTY	2 cut(s)	365, 645
AseI	ATTAAT	2 cut(s)	413, 605
Asp718I	GGTACC	1 cut(s)	857
AspLEI	GCGC	1 cut(s)	784
AspS9I	GGNCC	1 cut(s)	118
AsuHPI	GGTGA	3 cut(s)	202, 327, 484
AvaI	CYCGRG	1 cut(s)	233
AvaII	GGWCC	1 cut(s)	118
BaeGI	GKGCMC	1 cut(s)	95
BanI	GGYRCC	2 cut(s)	548, 857
BanII	GRGCYC	1 cut(s)	992
BbsI	GAAGAC	1 cut(s)	114
Bbv12I	GWGCWC	1 cut(s)	95
BbvI	GCAGC	4 cut(s)	815, 916, 944, 986
BccI	CCATC	1 cut(s)	744
BciT130I	CCWGG	2 cut(s)	470, 719
BciVI	GTATCC	1 cut(s)	697
BclI	TGATCA	1 cut(s)	508
BcoDI	GTCTC	4 cut(s)	223, 317, 798, 878
BfaI	CTAG	7 cut(s)	149, 206, 284, 564, 888, 993, 1046
BfmI	CTRYAG	2 cut(s)	801, 930
BfuAI	ACCTGC	1 cut(s)	512
BfuI	GTATCC	1 cut(s)	697
BisI	GCNGC	6 cut(s)	270, 804, 816, 930, 933, 975
BlsI	GCNGC	6 cut(s)	271, 805, 817, 931, 934, 976
Bme1390I	CCNGG	2 cut(s)	470, 719
Bme18I	GGWCC	1 cut(s)	118
BmeT110I	CYCGRG	1 cut(s)	233
BmgT120I	GGNCC	1 cut(s)	118
BmiI	GGNNCC	3 cut(s)	154, 550, 859
BmrFI	CCNGG	2 cut(s)	470, 719
BmsI	GCATC	3 cut(s)	56, 304, 412
BpiI	GAAGAC	1 cut(s)	114
BpuEI	CTTGAG	1 cut(s)	436
BsaI	GGTCTC	2 cut(s)	223, 317
BsaJI	CCNNGG	2 cut(s)	356, 468
Bsc4I	CCNNNNNNNGG	2 cut(s)	206, 377
Bse118I	RCCGGY	1 cut(s)	272
Bse1I	ACTGG	2 cut(s)	439, 1057
Bse3DI	GCAATG	2 cut(s)	156, 432
BseBI	CCWGG	2 cut(s)	470, 719
BseDI	CCNNGG	2 cut(s)	356, 468
BseLI	CCNNNNNNNGG	2 cut(s)	206, 377
BseMI	GCAATG	2 cut(s)	156, 432
BseMII	CTCAG	2 cut(s)	218, 791
BseNI	ACTGG	2 cut(s)	439, 1057
BseSI	GKGCMC	1 cut(s)	95
BseX3I	CGGCCG	1 cut(s)	270
BseXI	GCAGC	4 cut(s)	815, 916, 944, 986
BseYI	CCCAGC	3 cut(s)	220, 640, 935
Bsh1285I	CGRYCG	1 cut(s)	273
BshFI	GGCC	1 cut(s)	272
BshNI	GGYRCC	2 cut(s)	548, 857
BsiEI	CGRYCG	1 cut(s)	273
BsiHKAI	GWGCWC	1 cut(s)	95
BsiHKCI	CYCGRG	1 cut(s)	233
BsiSI	CCGG	1 cut(s)	273
BslFI	GGGAC	2 cut(s)	928, 1063
BslI	CCNNNNNNNGG	2 cut(s)	206, 377
BsmAI	GTCTC	4 cut(s)	223, 317, 798, 878
BsmFI	GGGAC	2 cut(s)	928, 1063
BsmI	GAATGC	1 cut(s)	1002
BsnI	GGCC	1 cut(s)	272
Bso31I	GGTCTC	2 cut(s)	223, 317
BsoBI	CYCGRG	1 cut(s)	233
Bsp1286I	GDGCHC	2 cut(s)	95, 992
Bsp143I	GATC	2 cut(s)	216, 508
Bsp19I	CCATGG	1 cut(s)	356
BspACI	CCGC	3 cut(s)	269, 815, 861
BspANI	GGCC	1 cut(s)	272
BspCNI	CTCAG	2 cut(s)	219, 790
BspHI	TCATGA	2 cut(s)	505, 984
BspLI	GGNNCC	3 cut(s)	154, 550, 859
BspMAI	CTGCAG	2 cut(s)	805, 934
BspMI	ACCTGC	1 cut(s)	512
BspPI	GGATC	1 cut(s)	211
BspT107I	GGYRCC	2 cut(s)	548, 857
BspTNI	GGTCTC	2 cut(s)	223, 317
BsrDI	GCAATG	2 cut(s)	156, 432
BsrFI	RCCGGY	1 cut(s)	272
BsrI	ACTGG	2 cut(s)	439, 1057
BssAI	RCCGGY	1 cut(s)	272
BssECI	CCNNGG	2 cut(s)	356, 468
BssMI	GATC	2 cut(s)	216, 508
BssT1I	CCWWGG	1 cut(s)	356
Bst2UI	CCWGG	2 cut(s)	470, 719
Bst4CI	ACNGT	2 cut(s)	76, 881
Bst6I	CTCTTC	2 cut(s)	483, 1044
BstAPI	GCANNNNNTGC	1 cut(s)	527
BstC8I	GCNNGC	1 cut(s)	561
BstDEI	CTNAG	2 cut(s)	227, 777
BstDSI	CCRYGG	1 cut(s)	356
BstHHI	GCGC	1 cut(s)	784
BstKTI	GATC	2 cut(s)	219, 511
BstMAI	GTCTC	4 cut(s)	223, 317, 798, 878
BstMBI	GATC	2 cut(s)	216, 508
BstMCI	CGRYCG	1 cut(s)	273
BstMWI	GCNNNNNNNGC	5 cut(s)	269, 527, 569, 812, 1079
BstNI	CCWGG	2 cut(s)	470, 719
BstNSI	RCATGY	1 cut(s)	34
BstSCI	CCNGG	2 cut(s)	468, 717
BstSFI	CTRYAG	2 cut(s)	801, 930
BstSLI	GKGCMC	1 cut(s)	95
BstV1I	GCAGC	4 cut(s)	815, 916, 944, 986
BstV2I	GAAGAC	1 cut(s)	114
BstX2I	RGATCY	1 cut(s)	216
BstYI	RGATCY	1 cut(s)	216
BstZI	CGGCCG	1 cut(s)	270
BsuI	GTATCC	1 cut(s)	697
BsuRI	GGCC	1 cut(s)	272
BtgI	CCRYGG	1 cut(s)	356
BtsI	GCAGTG	1 cut(s)	200
BtsIMutI	CAGTG	2 cut(s)	200, 886
BveI	ACCTGC	1 cut(s)	512
Cac8I	GCNNGC	1 cut(s)	561
CciI	TCATGA	2 cut(s)	505, 984
CfoI	GCGC	1 cut(s)	784
Cfr10I	RCCGGY	1 cut(s)	272
Cfr13I	GGNCC	1 cut(s)	118
Csp6I	GTAC	1 cut(s)	858
CviQI	GTAC	1 cut(s)	858
DdeI	CTNAG	2 cut(s)	227, 777
DpnI	GATC	2 cut(s)	218, 510
DpnII	GATC	2 cut(s)	216, 508
DraIII	CACNNNGTG	1 cut(s)	548
EaeI	YGGCCR	1 cut(s)	270
EagI	CGGCCG	1 cut(s)	270
Eam1104I	CTCTTC	2 cut(s)	483, 1044
EarI	CTCTTC	2 cut(s)	483, 1044
EclXI	CGGCCG	1 cut(s)	270
Eco130I	CCWWGG	1 cut(s)	356
Eco24I	GRGCYC	1 cut(s)	992
Eco31I	GGTCTC	2 cut(s)	223, 317
Eco47I	GGWCC	1 cut(s)	118
Eco52I	CGGCCG	1 cut(s)	270
Eco57I	CTGAAG	2 cut(s)	126, 603
Eco88I	CYCGRG	1 cut(s)	233
EcoRII	CCWGG	2 cut(s)	468, 717
EcoT14I	CCWWGG	1 cut(s)	356
EcoT38I	GRGCYC	1 cut(s)	992
ErhI	CCWWGG	1 cut(s)	356
FaqI	GGGAC	2 cut(s)	928, 1063
FbaI	TGATCA	1 cut(s)	508
Fnu4HI	GCNGC	6 cut(s)	270, 804, 816, 930, 933, 975
FriOI	GRGCYC	1 cut(s)	992
Fsp4HI	GCNGC	6 cut(s)	270, 804, 816, 930, 933, 975
FspBI	CTAG	7 cut(s)	149, 206, 284, 564, 888, 993, 1046
GlaI	GCGC	1 cut(s)	783
GluI	GCNGC	6 cut(s)	270, 804, 816, 930, 933, 975
GsaI	CCCAGC	3 cut(s)	224, 644, 939
HaeIII	GGCC	1 cut(s)	272
HapII	CCGG	1 cut(s)	273
HhaI	GCGC	1 cut(s)	784
Hin6I	GCGC	1 cut(s)	782
HinP1I	GCGC	1 cut(s)	782
HincII	GTYRAC	1 cut(s)	964
HindII	GTYRAC	1 cut(s)	964
HindIII	AAGCTT	2 cut(s)	15, 454
HinfI	GANTC	5 cut(s)	101, 193, 280, 923, 1015
HpaII	CCGG	1 cut(s)	273
HphI	GGTGA	3 cut(s)	202, 327, 484
Hpy166II	GTNNAC	3 cut(s)	93, 877, 964
Hpy188I	TCNGA	4 cut(s)	106, 228, 583, 601
Hpy188III	TCNNGA	3 cut(s)	506, 870, 985
Hpy8I	GTNNAC	3 cut(s)	93, 877, 964
HpyAV	CCTTC	2 cut(s)	304, 382
HpyCH4III	ACNGT	2 cut(s)	76, 881
HpyCH4V	TGCA	9 cut(s)	93, 425, 521, 530, 803, 851, 932, 974, 1000
HpyF10VI	GCNNNNNNNGC	5 cut(s)	269, 527, 569, 812, 1079
HpyF3I	CTNAG	2 cut(s)	227, 777
HspAI	GCGC	1 cut(s)	782
KpnI	GGTACC	1 cut(s)	861
Ksp22I	TGATCA	1 cut(s)	508
Kzo9I	GATC	2 cut(s)	216, 508
LmnI	GCTCC	2 cut(s)	158, 637
Lsp1109I	GCAGC	4 cut(s)	815, 916, 944, 986
LweI	GCATC	3 cut(s)	56, 304, 412
MaeI	CTAG	7 cut(s)	149, 206, 284, 564, 888, 993, 1046
MaeIII	GTNAC	1 cut(s)	472
MalI	GATC	2 cut(s)	218, 510
MboI	GATC	2 cut(s)	216, 508
MfeI	CAATTG	1 cut(s)	1019
MflI	RGATCY	1 cut(s)	216
MhlI	GDGCHC	2 cut(s)	95, 992
MlyI	GAGTC	1 cut(s)	202
MmeI	TCCRAC	1 cut(s)	615
MnlI	CCTC	3 cut(s)	723, 742, 1005
MseI	TTAA	4 cut(s)	413, 458, 605, 944
MslI	CAYNNNNRTG	5 cut(s)	126, 510, 516, 531, 543
MspA1I	CMGCKG	2 cut(s)	929, 935
MspI	CCGG	1 cut(s)	273
MspR9I	CCNGG	2 cut(s)	470, 719
MunI	CAATTG	1 cut(s)	1019
Mva1269I	GAATGC	1 cut(s)	1002
MvaI	CCWGG	2 cut(s)	470, 719
MwoI	GCNNNNNNNGC	5 cut(s)	269, 527, 569, 812, 1079
NcoI	CCATGG	1 cut(s)	356
NdeII	GATC	2 cut(s)	216, 508
NlaIV	GGNNCC	3 cut(s)	154, 550, 859
NmuCI	GTSAC	1 cut(s)	472
NspI	RCATGY	1 cut(s)	34
PagI	TCATGA	2 cut(s)	505, 984
PciI	ACATGT	1 cut(s)	30
PctI	GAATGC	1 cut(s)	1002
PfeI	GAWTC	4 cut(s)	101, 280, 923, 1015
PkrI	GCNGC	6 cut(s)	271, 805, 817, 931, 934, 976
PleI	GAGTC	1 cut(s)	201
PpsI	GAGTC	1 cut(s)	201
PscI	ACATGT	1 cut(s)	30
PshBI	ATTAAT	2 cut(s)	413, 605
PsiI	TTATAA	1 cut(s)	665
Psp6I	CCWGG	2 cut(s)	468, 717
PspFI	CCCAGC	3 cut(s)	220, 640, 935
PspGI	CCWGG	2 cut(s)	468, 717
PspN4I	GGNNCC	3 cut(s)	154, 550, 859
PspPI	GGNCC	1 cut(s)	118
PstI	CTGCAG	2 cut(s)	805, 934
PsuI	RGATCY	1 cut(s)	216
PvuII	CAGCTG	2 cut(s)	929, 935
RsaI	GTAC	1 cut(s)	859
RsaNI	GTAC	1 cut(s)	858
RseI	CAYNNNNRTG	5 cut(s)	126, 510, 516, 531, 543
SaqAI	TTAA	4 cut(s)	413, 458, 605, 944
SatI	GCNGC	6 cut(s)	270, 804, 816, 930, 933, 975
Sau3AI	GATC	2 cut(s)	216, 508
Sau96I	GGNCC	1 cut(s)	118
SchI	GAGTC	1 cut(s)	202
ScrFI	CCNGG	2 cut(s)	470, 719
SduI	GDGCHC	2 cut(s)	95, 992
SfaNI	GCATC	3 cut(s)	56, 304, 412
SfcI	CTRYAG	2 cut(s)	801, 930
SinI	GGWCC	1 cut(s)	118
SmiMI	CAYNNNNRTG	5 cut(s)	126, 510, 516, 531, 543
SmlI	CTYRAG	1 cut(s)	451
SmoI	CTYRAG	1 cut(s)	451
SsiI	CCGC	3 cut(s)	269, 815, 861
SspMI	CTAG	7 cut(s)	149, 206, 284, 564, 888, 993, 1046
StyD4I	CCNGG	2 cut(s)	468, 717
StyI	CCWWGG	1 cut(s)	356
TaaI	ACNGT	2 cut(s)	76, 881
TaqII	GACCGA	1 cut(s)	786
TauI	GCSGC	2 cut(s)	272, 818
TfiI	GAWTC	4 cut(s)	101, 280, 923, 1015
Tru1I	TTAA	4 cut(s)	413, 458, 605, 944
Tru9I	TTAA	4 cut(s)	413, 458, 605, 944
TscAI	CASTG	2 cut(s)	207, 886
TseFI	GTSAC	1 cut(s)	472
TseI	GCWGC	4 cut(s)	803, 929, 932, 974
Tsp45I	GTSAC	1 cut(s)	472
TspDTI	ATGAA	7 cut(s)	9, 41, 144, 241, 286, 501, 973
TspRI	CASTG	2 cut(s)	207, 886
VneI	GTGCAC	1 cut(s)	91
VpaK11BI	GGWCC	1 cut(s)	118
VspI	ATTAAT	2 cut(s)	413, 605
XapI	RAATTY	2 cut(s)	365, 645
XceI	RCATGY	1 cut(s)	34
XspI	CTAG	7 cut(s)	149, 206, 284, 564, 888, 993, 1046

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.