Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0002306

Physical Location & Seq

Genomic Coordinates Forward (+)

36789515 .. 36789790

Gene Structure 276 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1236600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGCGACATTTTTCTCCCTCACAACGCCGGTAGGGATTGCAGTAGGTGTCGGAATATCAACCGTTTACAACATGAACAGTCCGACTGCACTCATTTTTGAAGGAACTTCGAATGCTGCCGCAGGGGGGATTTTGATTTACATGGCTCTTGTTGACCTACTAGCAGCAGATTTCATGAACCCTAGAATGCAAGGCAATTTGAAGATTCAGTTAGGAGCATACTCTTCGCTCCTTCTGGGGACTGGTTGTATGTCTCTCTTAGCCAAATGGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0071944 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

92

Amino Acids

9.45

Weight (kDa)

5.87

Isoelectric Point (pI)

19.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	1 - 88	3.3e-20	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12750
fragaria_vesca	FvH4_3g12900 FvH4_3g14490 FvH4_3g14490
malus_domestica	MD05G1236500.v1.1 MD05G1236600.v1.1 MD05G1247200.v1.1 MD10G1227800.v1.1
prunus_persica	Prupe.4G117200_v2.0.a1 Prupe.4G129600_v2.0.a1 Prupe.4G129700_v2.0.a1
pyrus_communis	pycom05g21350 pycom05g22310 pycom10g19130
rosa_chinensis	RchiOBHm_Chr5g0021001 RchiOBHm_Chr5g0023861 RchiOBHm_Chr5g0023871
rosa_laevigata	RLG00000032576 RLG00000032741 RLG00000032742
rosa_multiflora	Rmu_sc0001372.1_g000002 Rmu_sc0001372.1_g000005 Rmu_ssc0000027.1_g000003 Rmu_ssc0000244.1_g000011
rosa_roxburghii	Rroxscaffold_1G00055380 Rroxscaffold_1G00057480
rosa_rugosa	Rorug05G0063700 Rorug05G0079800 Rorug05G0079900
rosa_samantha	Rh5AG153300 Rh5AG169900 Rh5AG170000 Rh5BG153000 Rh5BG167200 Rh5BG167300 Rh5CG165600 Rh5CG182800 Rh5DG152400 Rh5DG169300
rosa_wichuraiana	Rw5G013620 Rw5G015360 Rw5G015370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	120
AfiI	CCNNNNNNNGG	1 cut(s)	126
AgsI	TTSAA	2 cut(s)	101, 202
Alw26I	GTCTC	1 cut(s)	258
ApeKI	GCWGC	2 cut(s)	116, 164
AsuII	TTCGAA	1 cut(s)	110
BbvI	GCAGC	2 cut(s)	103, 176
BcgI	CGANNNNNNTGC	2 cut(s)	207, 241
BcoDI	GTCTC	1 cut(s)	258
BfaI	CTAG	2 cut(s)	161, 183
BglI	GCCNNNNNGGC	1 cut(s)	269
BisI	GCNGC	3 cut(s)	117, 120, 165
BlsI	GCNGC	3 cut(s)	118, 121, 166
Bpu14I	TTCGAA	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	1 cut(s)	126
Bse118I	RCCGGY	1 cut(s)	28
Bse1I	ACTGG	1 cut(s)	247
BseLI	CCNNNNNNNGG	1 cut(s)	126
BseNI	ACTGG	1 cut(s)	247
BseXI	GCAGC	2 cut(s)	103, 176
BsgI	GTGCAG	1 cut(s)	72
BsiSI	CCGG	1 cut(s)	29
BslFI	GGGAC	1 cut(s)	253
BslI	CCNNNNNNNGG	1 cut(s)	126
BsmAI	GTCTC	1 cut(s)	258
BsmFI	GGGAC	1 cut(s)	253
BsmI	GAATGC	2 cut(s)	118, 192
Bsp119I	TTCGAA	1 cut(s)	110
BspACI	CCGC	1 cut(s)	120
BspHI	TCATGA	1 cut(s)	174
BspT104I	TTCGAA	1 cut(s)	110
BsrFI	RCCGGY	1 cut(s)	28
BsrI	ACTGG	1 cut(s)	247
BssAI	RCCGGY	1 cut(s)	28
Bst4CI	ACNGT	2 cut(s)	64, 80
Bst6I	CTCTTC	1 cut(s)	229
BstBI	TTCGAA	1 cut(s)	110
BstDEI	CTNAG	1 cut(s)	259
BstMAI	GTCTC	1 cut(s)	258
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstV1I	GCAGC	2 cut(s)	103, 176
CciI	TCATGA	1 cut(s)	174
Cfr10I	RCCGGY	1 cut(s)	28
CviAII	CATG	3 cut(s)	73, 142, 175
CviJI	RGCY	3 cut(s)	146, 263, 272
CviKI_1	RGCY	3 cut(s)	146, 263, 272
DdeI	CTNAG	1 cut(s)	259
Eam1104I	CTCTTC	1 cut(s)	229
EarI	CTCTTC	1 cut(s)	229
FaeI	CATG	3 cut(s)	76, 145, 178
FaiI	YATR	5 cut(s)	74, 143, 176, 220, 251
FaqI	GGGAC	1 cut(s)	253
FatI	CATG	3 cut(s)	72, 141, 174
Fnu4HI	GCNGC	3 cut(s)	117, 120, 165
Fsp4HI	GCNGC	3 cut(s)	117, 120, 165
FspBI	CTAG	2 cut(s)	161, 183
GluI	GCNGC	3 cut(s)	117, 120, 165
HapII	CCGG	1 cut(s)	29
Hin1II	CATG	3 cut(s)	76, 145, 178
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HinfI	GANTC	1 cut(s)	205
HpaII	CCGG	1 cut(s)	29
Hpy166II	GTNNAC	2 cut(s)	67, 154
Hpy188I	TCNGA	2 cut(s)	53, 84
Hpy188III	TCNNGA	1 cut(s)	175
Hpy8I	GTNNAC	2 cut(s)	67, 154
HpyAV	CCTTC	2 cut(s)	95, 242
HpyCH4III	ACNGT	2 cut(s)	64, 80
HpyCH4V	TGCA	3 cut(s)	41, 89, 190
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
HpyF3I	CTNAG	1 cut(s)	259
Hsp92II	CATG	3 cut(s)	76, 145, 178
LmnI	GCTCC	2 cut(s)	215, 234
LpnPI	CCDG	4 cut(s)	42, 108, 221, 228
Lsp1109I	GCAGC	2 cut(s)	103, 176
MaeI	CTAG	2 cut(s)	161, 183
MboII	GAAGA	2 cut(s)	214, 216
MluCI	AATT	1 cut(s)	196
MmeI	TCCRAC	2 cut(s)	31, 107
MnlI	CCTC	1 cut(s)	29
MspI	CCGG	1 cut(s)	29
Mva1269I	GAATGC	2 cut(s)	118, 192
MwoI	GCNNNNNNNGC	1 cut(s)	269
NlaIII	CATG	3 cut(s)	76, 145, 178
NspV	TTCGAA	1 cut(s)	110
PagI	TCATGA	1 cut(s)	174
PctI	GAATGC	2 cut(s)	118, 192
PfeI	GAWTC	1 cut(s)	205
PkrI	GCNGC	3 cut(s)	118, 121, 166
SatI	GCNGC	3 cut(s)	117, 120, 165
SetI	ASST	2 cut(s)	49, 159
SfuI	TTCGAA	1 cut(s)	110
Sse9I	AATT	1 cut(s)	196
SsiI	CCGC	1 cut(s)	120
SspMI	CTAG	2 cut(s)	161, 183
TaaI	ACNGT	2 cut(s)	64, 80
TaqI	TCGA	1 cut(s)	110
TasI	AATT	1 cut(s)	196
TauI	GCSGC	1 cut(s)	122
TfiI	GAWTC	1 cut(s)	205
TseI	GCWGC	2 cut(s)	116, 164
TspDTI	ATGAA	3 cut(s)	89, 163, 191
XspI	CTAG	2 cut(s)	161, 183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.