Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002306

Physical Location & Seq

Genomic Coordinates Forward (+)

23989769 .. 23990656

Gene Structure 888 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g21350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGTCATCTGCCACTGGAACACTGATGGTCGATTCATTGGCACCCGGGTACTATCAGAGATCGAATGTAAAGTACAATCAGGTGACGATTCATGAACTAGAGAGCGGTGACGATGATCATGCAGGCCATGTACATGGTCACACACATTCCACACAGGGCCATGCTCATGGCTCCGAAGAATTGAGATCATCGGAACTAATCAAGCACCGTGTCTTTTCACAAGTGTTGGAGCTGGGGATCCTAGCGCATTCAGTTATAATCGGAATATCATTGGGTGCTTCCCCAAGTCCGGAAACAATAAAGCCTCTCATTGTTGCTTTGTCTTTCCATCAATTCTTTGAAGGCATGGGACTTGGTGGCTGCATCTCCATGGTAAATCCTCAAACAATAAAGCCGCTCATGATCTCACTTATAACTATAAGTCTAAATCTCCTGTTGAACTGCCCTACAGGCAAAATTCAAGTCTCGGTCTGCAATGGTCATGGCGACATTTTTCTCCCTCACAACGCCGGCAGGGATTGCAGTAGGTGTCCGAATATCAACAGTTTACAACGTGAACAGTCCGACTGCACTCATTGTTTAAGAACTTTGAATGCTGCTTCAGGGGGGATTTTGATTTACATGGCTCTTGTTGACCTACTAGCAGCAGATTTCATGAACCCTAGAATTAATGCAAGGCAATTTGAAGATTCAGTTAGGAGCATACTCTTCGCTCCTTCTGGGGACTGGTTGTATGTCTCTCTTAGCCAAATGGGCTTGAAATCTGAGCAAAGCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0071944 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

260

Amino Acids

28.09

Weight (kDa)

6.13

Isoelectric Point (pI)

43.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	2 - 139	4.3e-22	ZIP Zinc transporter
Zip	PF02535	196 - 232	2.1e-06	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12750
fragaria_vesca	FvH4_3g12900 FvH4_3g14490 FvH4_3g14490
malus_domestica	MD05G1236500.v1.1 MD05G1236600.v1.1 MD05G1247200.v1.1 MD10G1227800.v1.1
prunus_persica	Prupe.4G117200_v2.0.a1 Prupe.4G129600_v2.0.a1 Prupe.4G129700_v2.0.a1
pyrus_communis	pycom05g21350 pycom05g22310 pycom10g19130
rosa_chinensis	RchiOBHm_Chr5g0021001 RchiOBHm_Chr5g0023861 RchiOBHm_Chr5g0023871
rosa_laevigata	RLG00000032576 RLG00000032741 RLG00000032742
rosa_multiflora	Rmu_sc0001372.1_g000002 Rmu_sc0001372.1_g000005 Rmu_ssc0000027.1_g000003 Rmu_ssc0000244.1_g000011
rosa_roxburghii	Rroxscaffold_1G00055380 Rroxscaffold_1G00057480
rosa_rugosa	Rorug05G0063700 Rorug05G0079800 Rorug05G0079900
rosa_samantha	Rh5AG153300 Rh5AG169900 Rh5AG170000 Rh5BG153000 Rh5BG167200 Rh5BG167300 Rh5CG165600 Rh5CG182800 Rh5DG152400 Rh5DG169300
rosa_wichuraiana	Rw5G013620 Rw5G015360 Rw5G015370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	257, 413, 778
AccB1I	GGYRCC	1 cut(s)	40
AccBSI	CCGCTC	2 cut(s)	105, 397
AccIII	TCCGGA	1 cut(s)	289
AciI	CCGC	2 cut(s)	105, 395
AclWI	GGATC	2 cut(s)	232, 245
AcsI	RAATTY	1 cut(s)	456
AcuI	CTGAAG	1 cut(s)	585
AfaI	GTAC	3 cut(s)	50, 74, 132
AfiI	CCNNNNNNNGG	1 cut(s)	289
AgsI	TTSAA	6 cut(s)	341, 439, 461, 592, 686, 760
AluBI	AGCT	2 cut(s)	232, 774
AluI	AGCT	2 cut(s)	232, 774
Alw26I	GTCTC	2 cut(s)	469, 742
AlwI	GGATC	2 cut(s)	232, 245
Ama87I	CYCGRG	1 cut(s)	44
Aor13HI	TCCGGA	1 cut(s)	289
AoxI	GGCC	2 cut(s)	124, 157
ApeKI	GCWGC	3 cut(s)	360, 596, 644
ApoI	RAATTY	1 cut(s)	456
ArsI	GACNNNNNNTTYG	2 cut(s)	447, 479
AseI	ATTAAT	1 cut(s)	669
AspLEI	GCGC	1 cut(s)	247
AspS9I	GGNCC	1 cut(s)	157
AsuC2I	CCSGG	2 cut(s)	45, 46
AsuHPI	GGTGA	2 cut(s)	94, 119
AvaI	CYCGRG	1 cut(s)	44
BamHI	GGATCC	1 cut(s)	237
BanI	GGYRCC	1 cut(s)	40
BbvI	GCAGC	3 cut(s)	347, 583, 656
BccI	CCATC	2 cut(s)	19, 336
BcgI	CGANNNNNNTGC	4 cut(s)	101, 135, 691, 725
BclI	TGATCA	1 cut(s)	115
BcnI	CCSGG	2 cut(s)	45, 46
BcoDI	GTCTC	2 cut(s)	469, 742
BfaI	CTAG	4 cut(s)	98, 242, 641, 663
BfmI	CTRYAG	1 cut(s)	447
BglI	GCCNNNNNGGC	2 cut(s)	450, 753
BisI	GCNGC	4 cut(s)	361, 395, 597, 645
BlsI	GCNGC	4 cut(s)	362, 396, 598, 646
Bme1390I	CCNGG	2 cut(s)	45, 46
BmeT110I	CYCGRG	1 cut(s)	44
BmgT120I	GGNCC	1 cut(s)	157
BmiI	GGNNCC	3 cut(s)	42, 172, 239
BmrFI	CCNGG	2 cut(s)	45, 46
BmsI	GCATC	1 cut(s)	372
BpuMI	CCSGG	2 cut(s)	45, 46
BsaJI	CCNNGG	2 cut(s)	44, 369
BsaWI	WCCGGW	1 cut(s)	289
Bsc4I	CCNNNNNNNGG	1 cut(s)	289
Bse118I	RCCGGY	1 cut(s)	509
Bse1I	ACTGG	2 cut(s)	19, 731
Bse3DI	GCAATG	1 cut(s)	481
BseAI	TCCGGA	1 cut(s)	289
BseDI	CCNNGG	2 cut(s)	44, 369
BseLI	CCNNNNNNNGG	1 cut(s)	289
BseMI	GCAATG	1 cut(s)	481
BseMII	CTCAG	1 cut(s)	756
BseNI	ACTGG	2 cut(s)	19, 731
BseXI	GCAGC	3 cut(s)	347, 583, 656
BseYI	CCCAGC	1 cut(s)	232
BsgI	GTGCAG	1 cut(s)	553
BshFI	GGCC	2 cut(s)	126, 159
BshNI	GGYRCC	1 cut(s)	40
BsiHKCI	CYCGRG	1 cut(s)	44
BsiSI	CCGG	3 cut(s)	45, 290, 510
BslFI	GGGAC	2 cut(s)	363, 737
BslI	CCNNNNNNNGG	1 cut(s)	289
BsmAI	GTCTC	2 cut(s)	469, 742
BsmFI	GGGAC	2 cut(s)	363, 737
BsmI	GAATGC	2 cut(s)	247, 598
BsnI	GGCC	2 cut(s)	126, 159
BsoBI	CYCGRG	1 cut(s)	44
Bsp13I	TCCGGA	1 cut(s)	289
Bsp1407I	TGTACA	1 cut(s)	130
Bsp143I	GATC	5 cut(s)	59, 115, 185, 237, 402
Bsp19I	CCATGG	1 cut(s)	369
BspACI	CCGC	2 cut(s)	105, 395
BspANI	GGCC	2 cut(s)	126, 159
BspCNI	CTCAG	1 cut(s)	757
BspEI	TCCGGA	1 cut(s)	289
BspHI	TCATGA	3 cut(s)	91, 399, 654
BspLI	GGNNCC	3 cut(s)	42, 172, 239
BspPI	GGATC	2 cut(s)	232, 245
BspT107I	GGYRCC	1 cut(s)	40
BsrBI	CCGCTC	2 cut(s)	105, 397
BsrDI	GCAATG	1 cut(s)	481
BsrFI	RCCGGY	1 cut(s)	509
BsrGI	TGTACA	1 cut(s)	130
BsrI	ACTGG	2 cut(s)	19, 731
BssAI	RCCGGY	1 cut(s)	509
BssECI	CCNNGG	2 cut(s)	44, 369
BssMI	GATC	5 cut(s)	59, 115, 185, 237, 402
BssT1I	CCWWGG	1 cut(s)	369
Bst4CI	ACNGT	3 cut(s)	209, 545, 561
Bst6I	CTCTTC	1 cut(s)	713
BstAPI	GCANNNNNTGC	1 cut(s)	519
BstAUI	TGTACA	1 cut(s)	130
BstC8I	GCNNGC	2 cut(s)	124, 511
BstDEI	CTNAG	2 cut(s)	743, 765
BstDSI	CCRYGG	1 cut(s)	369
BstHHI	GCGC	1 cut(s)	247
BstKTI	GATC	5 cut(s)	62, 118, 188, 240, 405
BstMAI	GTCTC	2 cut(s)	469, 742
BstMBI	GATC	5 cut(s)	59, 115, 185, 237, 402
BstMWI	GCNNNNNNNGC	3 cut(s)	450, 519, 753
BstSCI	CCNGG	2 cut(s)	43, 44
BstSFI	CTRYAG	1 cut(s)	447
BstV1I	GCAGC	3 cut(s)	347, 583, 656
BstX2I	RGATCY	1 cut(s)	237
BstXI	CCANNNNNNTGG	2 cut(s)	134, 167
BstYI	RGATCY	1 cut(s)	237
BsuRI	GGCC	2 cut(s)	126, 159
BtgI	CCRYGG	1 cut(s)	369
BtsIMutI	CAGTG	2 cut(s)	12, 20
Cac8I	GCNNGC	2 cut(s)	124, 511
CciI	TCATGA	3 cut(s)	91, 399, 654
CfoI	GCGC	1 cut(s)	247
Cfr10I	RCCGGY	1 cut(s)	509
Cfr13I	GGNCC	1 cut(s)	157
Cfr9I	CCCGGG	1 cut(s)	44
Csp6I	GTAC	3 cut(s)	49, 73, 131
CviQI	GTAC	3 cut(s)	49, 73, 131
DdeI	CTNAG	2 cut(s)	743, 765
DpnI	GATC	5 cut(s)	61, 117, 187, 239, 404
DpnII	GATC	5 cut(s)	59, 115, 185, 237, 402
Eam1104I	CTCTTC	1 cut(s)	713
EarI	CTCTTC	1 cut(s)	713
Eco130I	CCWWGG	1 cut(s)	369
Eco57I	CTGAAG	1 cut(s)	585
Eco88I	CYCGRG	1 cut(s)	44
EcoT14I	CCWWGG	1 cut(s)	369
ErhI	CCWWGG	1 cut(s)	369
FaqI	GGGAC	2 cut(s)	363, 737
FbaI	TGATCA	1 cut(s)	115
Fnu4HI	GCNGC	4 cut(s)	361, 395, 597, 645
Fsp4HI	GCNGC	4 cut(s)	361, 395, 597, 645
FspBI	CTAG	4 cut(s)	98, 242, 641, 663
GlaI	GCGC	1 cut(s)	246
GluI	GCNGC	4 cut(s)	361, 395, 597, 645
GsaI	CCCAGC	1 cut(s)	236
HaeIII	GGCC	2 cut(s)	126, 159
HapII	CCGG	3 cut(s)	45, 290, 510
HhaI	GCGC	1 cut(s)	247
Hin6I	GCGC	1 cut(s)	245
HinP1I	GCGC	1 cut(s)	245
HincII	GTYRAC	1 cut(s)	634
HindII	GTYRAC	1 cut(s)	634
HindIII	AAGCTT	1 cut(s)	772
HinfI	GANTC	3 cut(s)	32, 88, 689
HpaII	CCGG	3 cut(s)	45, 290, 510
HphI	GGTGA	2 cut(s)	94, 119
Hpy166II	GTNNAC	3 cut(s)	548, 557, 634
Hpy188I	TCNGA	7 cut(s)	57, 175, 193, 263, 534, 565, 766
Hpy188III	TCNNGA	4 cut(s)	92, 290, 400, 655
Hpy8I	GTNNAC	3 cut(s)	548, 557, 634
HpyAV	CCTTC	2 cut(s)	335, 726
HpyCH4III	ACNGT	3 cut(s)	209, 545, 561
HpyCH4IV	ACGT	1 cut(s)	553
HpyCH4V	TGCA	6 cut(s)	122, 363, 474, 522, 570, 674
HpyF10VI	GCNNNNNNNGC	3 cut(s)	450, 519, 753
HpyF3I	CTNAG	2 cut(s)	743, 765
HpySE526I	ACGT	1 cut(s)	553
HspAI	GCGC	1 cut(s)	245
Kpn2I	TCCGGA	1 cut(s)	289
KroI	GCCGGC	1 cut(s)	509
KroNI	GCCGGC	1 cut(s)	511
Ksp22I	TGATCA	1 cut(s)	115
Kzo9I	GATC	5 cut(s)	59, 115, 185, 237, 402
LmnI	GCTCC	4 cut(s)	176, 229, 699, 718
Lsp1109I	GCAGC	3 cut(s)	347, 583, 656
LweI	GCATC	1 cut(s)	372
MaeI	CTAG	4 cut(s)	98, 242, 641, 663
MaeII	ACGT	1 cut(s)	553
MaeIII	GTNAC	3 cut(s)	82, 107, 137
MalI	GATC	5 cut(s)	61, 117, 187, 239, 404
MbiI	CCGCTC	2 cut(s)	105, 397
MboI	GATC	5 cut(s)	59, 115, 185, 237, 402
MboII	GAAGA	3 cut(s)	188, 698, 700
MflI	RGATCY	1 cut(s)	237
MluCI	AATT	5 cut(s)	179, 332, 456, 666, 680
MmeI	TCCRAC	2 cut(s)	207, 588
MnlI	CCTC	3 cut(s)	315, 390, 510
MroI	TCCGGA	1 cut(s)	289
MroNI	GCCGGC	1 cut(s)	509
MseI	TTAA	2 cut(s)	581, 669
MslI	CAYNNNNRTG	3 cut(s)	132, 165, 368
MspI	CCGG	3 cut(s)	45, 290, 510
MspR9I	CCNGG	2 cut(s)	45, 46
Mva1269I	GAATGC	2 cut(s)	247, 598
MwoI	GCNNNNNNNGC	3 cut(s)	450, 519, 753
NaeI	GCCGGC	1 cut(s)	511
NciI	CCSGG	2 cut(s)	45, 46
NcoI	CCATGG	1 cut(s)	369
NdeII	GATC	5 cut(s)	59, 115, 185, 237, 402
NgoMIV	GCCGGC	1 cut(s)	509
NlaIV	GGNNCC	3 cut(s)	42, 172, 239
NmuCI	GTSAC	3 cut(s)	82, 107, 137
PagI	TCATGA	3 cut(s)	91, 399, 654
PctI	GAATGC	2 cut(s)	247, 598
PdiI	GCCGGC	1 cut(s)	511
PfeI	GAWTC	3 cut(s)	32, 88, 689
PkrI	GCNGC	4 cut(s)	362, 396, 598, 646
PshBI	ATTAAT	1 cut(s)	669
PsiI	TTATAA	3 cut(s)	257, 413, 778
PspFI	CCCAGC	1 cut(s)	232
PspN4I	GGNNCC	3 cut(s)	42, 172, 239
PspPI	GGNCC	1 cut(s)	157
PsuI	RGATCY	1 cut(s)	237
RsaI	GTAC	3 cut(s)	50, 74, 132
RsaNI	GTAC	3 cut(s)	49, 73, 131
RseI	CAYNNNNRTG	3 cut(s)	132, 165, 368
SaqAI	TTAA	2 cut(s)	581, 669
SatI	GCNGC	4 cut(s)	361, 395, 597, 645
Sau3AI	GATC	5 cut(s)	59, 115, 185, 237, 402
Sau96I	GGNCC	1 cut(s)	157
ScrFI	CCNGG	2 cut(s)	45, 46
SetI	ASST	6 cut(s)	84, 234, 530, 556, 639, 776
SfaNI	GCATC	1 cut(s)	372
SfcI	CTRYAG	1 cut(s)	447
SmaI	CCCGGG	1 cut(s)	46
SmiMI	CAYNNNNRTG	3 cut(s)	132, 165, 368
Sse9I	AATT	5 cut(s)	179, 332, 456, 666, 680
SsiI	CCGC	2 cut(s)	105, 395
SspMI	CTAG	4 cut(s)	98, 242, 641, 663
StyD4I	CCNGG	2 cut(s)	43, 44
StyI	CCWWGG	1 cut(s)	369
TaaI	ACNGT	3 cut(s)	209, 545, 561
TaiI	ACGT	1 cut(s)	556
TaqI	TCGA	2 cut(s)	30, 62
TaqII	GACCGA	1 cut(s)	457
TasI	AATT	5 cut(s)	179, 332, 456, 666, 680
TatI	WGTACW	2 cut(s)	72, 130
TauI	GCSGC	1 cut(s)	397
TfiI	GAWTC	3 cut(s)	32, 88, 689
Tru1I	TTAA	2 cut(s)	581, 669
Tru9I	TTAA	2 cut(s)	581, 669
TscAI	CASTG	2 cut(s)	19, 27
TseFI	GTSAC	3 cut(s)	82, 107, 137
TseI	GCWGC	3 cut(s)	360, 596, 644
Tsp45I	GTSAC	3 cut(s)	82, 107, 137
TspDTI	ATGAA	5 cut(s)	24, 80, 108, 643, 671
TspMI	CCCGGG	1 cut(s)	44
TspRI	CASTG	2 cut(s)	19, 27
VspI	ATTAAT	1 cut(s)	669
XapI	RAATTY	1 cut(s)	456
XmaI	CCCGGG	1 cut(s)	44
XspI	CTAG	4 cut(s)	98, 242, 641, 663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.