MD05G1247200.v1.1

Zinc transporter

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Reverse (-)
37833961 .. 37836957
2997 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1247200.v1.1.491

Sequence Viewer

Length: 1194 bp
ATGTCGCCATTTTTACCTCAATGCCTTTGCTTTCCCCAAATTCTCCAACTCATATATACAGGAAGCATTCAGCTCACCACTTCACAATCCCATTTCAAAACCCTCTCTGTCTCTCTGAAAGCCATGAAAAAGCTCACTCCCGCTTATATTCTTCCTCTTCTTCTCCTTCTCCTTTTTGTCCCCATCTCGGTTTCCGCGGGATGCGAATGCAATTCGGAAACCGTAGACCATGATAAGTTCAAAGTCCTCAAGTTCAAGCTAGTTGCAATAAGTTCAATCCTCATAGCAAGTTTCCTTGGTGTCTCCCTCCCAATGTTGGGCAAGAAAATTCCGGCTCTAAACCCCGAAAATGACATCTTCTTCATGATCAAGGCCTTTGCTGCCGGTGTCATTCTAGCAACAGGTTTCATCCACGTGCTGCCGGACGCTTTTGAGAGCTTGACAAGCCCTTGCCTCAGCGAAACCCCGTGGGGGAACTTCCCCTTTACCGGCTTCATCGCCATGCTTTCGGCGATTGGGACGATGATGATCGATACCCTTGCCACCAGCTATTATAGAAGATCTCATTTCACTAAGCCACTGCCGGTGAATGAGGATGAAGAGATGAATAGGGTGCCTGAGGGTCATGTGCATGGTCACACTCATGCCACACACGGCCGTGCTCATGGTTCCGGCGTGATTGCGGCGGAGGATTCGATTCCTTCTTTCGAGCTTGTTAGGCATCGAGTGATATCACAGGTTCTGGAGCTGGGAATTTTGGTTCATTCAGTGATTATTGGGATATCTTTAGGTGCCTCACAGAGTCCCAAAACAATCAAACCTCTTGTAGCAGCTCTTACTTTCCATCAATTTTTCGAAGGCATGGGCCTTGGTGGGTGCATAACTCAGGCCAACTTCAAGTCCAGGGCCATTGCAACAATGGTGCTTTTCTTCTCCCTCACCACCCCAATTGGAATTGGTGTTGGAATGGGAATATCAAACATTTACAATGATACCAGCCCAACTGCTCTAATTGTGGAAGGAGTCTTCAACTCTGCATCAGCTGGGATCCTAATATACATGGCTCTGGTTGACCTGCTAGCAGCAGATTTTATGAACCCTAGAATGCAGAGCAATCTAAGGATCCAGCTTGGGGCTAATGTTTCACTTCTTCTGGGCTGTGGATGTATGTCTCTTTTGGCCAAATGGGCCTAA

Protein Analysis

398

Amino Acids

42.78

Weight (kDa)

7.66

Isoelectric Point (pI)

34.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zip PF02535 84 - 394 1.9e-82 ZIP Zinc transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1083
AccB1I GGYRCC 2 cut(s) 613, 791
AccI GTMKAC 1 cut(s) 225
AccII CGCG 1 cut(s) 197
AciI CCGC 5 cut(s) 141, 195, 197, 683, 686
AclWI GGATC 4 cut(s) 1042, 1055, 1117, 1130
AcoI YGGCCR 2 cut(s) 655, 1179
AcsI RAATTY 3 cut(s) 39, 327, 753
AcvI CACGTG 1 cut(s) 415
AfiI CCNNNNNNNGG 6 cut(s) 187, 316, 317, 471, 488, 1132
AgsI TTSAA 6 cut(s) 97, 241, 256, 276, 898, 1030
AjnI CCWGG 1 cut(s) 902
AleI CACNNNNGTG 1 cut(s) 657
AloI GAACNNNNNNTCC 2 cut(s) 744, 776
Alw21I GWGCWC 1 cut(s) 664
Alw26I GTCTC 3 cut(s) 115, 307, 1176
AlwI GGATC 4 cut(s) 1042, 1055, 1117, 1130
AlwNI CAGNNNCTG 1 cut(s) 742
AoxI GGCC 7 cut(s) 372, 655, 865, 888, 906, 1179, 1188
ApeKI GCWGC 4 cut(s) 380, 418, 830, 1082
ApoI RAATTY 3 cut(s) 39, 327, 753
AspS9I GGNCC 3 cut(s) 865, 906, 1188
AsuHPI GGTGA 3 cut(s) 67, 598, 931
AsuII TTCGAA 1 cut(s) 855
AsuNHI GCTAGC 1 cut(s) 1078
AxyI CCTNAGG 1 cut(s) 618
BalI TGGCCA 1 cut(s) 1181
BamHI GGATCC 2 cut(s) 1047, 1122
BanI GGYRCC 2 cut(s) 613, 791
BbrPI CACGTG 1 cut(s) 415
BbsI GAAGAC 1 cut(s) 1018
Bbv12I GWGCWC 1 cut(s) 664
BbvCI CCTCAGC 1 cut(s) 455
BbvI GCAGC 4 cut(s) 367, 405, 842, 1094
BccI CCATC 2 cut(s) 191, 852
BceAI ACGGC 2 cut(s) 642, 670
BcgI CGANNNNNNTGC 2 cut(s) 521, 555
BciT130I CCWGG 1 cut(s) 904
BclI TGATCA 1 cut(s) 366
BcoDI GTCTC 3 cut(s) 115, 307, 1176
BfaI CTAG 4 cut(s) 260, 395, 1079, 1101
BfuAI ACCTGC 1 cut(s) 1083
BglI GCCNNNNNGGC 1 cut(s) 1187
BglII AGATCT 1 cut(s) 560
BisI GCNGC 5 cut(s) 381, 419, 684, 831, 1083
BlsI GCNGC 5 cut(s) 382, 420, 685, 832, 1084
Bme1390I CCNGG 1 cut(s) 904
BmgT120I GGNCC 3 cut(s) 865, 906, 1188
BmiI GGNNCC 5 cut(s) 615, 670, 793, 1049, 1124
BmrFI CCNGG 1 cut(s) 904
BmsI GCATC 3 cut(s) 191, 730, 1046
BmtI GCTAGC 1 cut(s) 1082
BpiI GAAGAC 1 cut(s) 1018
BpmI CTGGAG 1 cut(s) 764
Bpu10I CCTNAGC 1 cut(s) 455
Bpu14I TTCGAA 1 cut(s) 855
BpuEI CTTGAG 1 cut(s) 233
Bsa29I ATCGAT 1 cut(s) 531
BsaAI YACGTR 1 cut(s) 415
BsaBI GATNNNNATC 1 cut(s) 527
BsaJI CCNNGG 5 cut(s) 195, 295, 467, 868, 903
Bsc4I CCNNNNNNNGG 6 cut(s) 187, 316, 317, 471, 488, 1132
Bse118I RCCGGY 3 cut(s) 383, 488, 583
Bse21I CCTNAGG 1 cut(s) 618
Bse3DI GCAATG 1 cut(s) 909
Bse8I GATNNNNATC 1 cut(s) 527
BseBI CCWGG 1 cut(s) 904
BseCI ATCGAT 1 cut(s) 531
BseDI CCNNGG 5 cut(s) 195, 295, 467, 868, 903
BseGI GGATG 4 cut(s) 206, 408, 601, 1169
BseJI GATNNNNATC 1 cut(s) 527
BseLI CCNNNNNNNGG 6 cut(s) 187, 316, 317, 471, 488, 1132
BseMI GCAATG 1 cut(s) 909
BseMII CTCAG 3 cut(s) 469, 609, 899
BseX3I CGGCCG 1 cut(s) 655
BseXI GCAGC 4 cut(s) 367, 405, 842, 1094
BseYI CCCAGC 2 cut(s) 748, 1043
Bsh1236I CGCG 1 cut(s) 197
Bsh1285I CGRYCG 1 cut(s) 658
BshFI GGCC 7 cut(s) 374, 657, 867, 890, 908, 1181, 1190
BshNI GGYRCC 2 cut(s) 613, 791
BshVI ATCGAT 1 cut(s) 531
BsiEI CGRYCG 1 cut(s) 658
BsiHKAI GWGCWC 1 cut(s) 664
BsiSI CCGG 6 cut(s) 332, 384, 422, 489, 584, 672
BslFI GGGAC 3 cut(s) 164, 532, 789
BslI CCNNNNNNNGG 6 cut(s) 187, 316, 317, 471, 488, 1132
BsmAI GTCTC 3 cut(s) 115, 307, 1176
BsmFI GGGAC 3 cut(s) 164, 532, 789
BsmI GAATGC 3 cut(s) 66, 212, 1110
BsnI GGCC 7 cut(s) 374, 657, 867, 890, 908, 1181, 1190
Bsp119I TTCGAA 1 cut(s) 855
Bsp1286I GDGCHC 1 cut(s) 664
Bsp143I GATC 5 cut(s) 366, 528, 560, 1047, 1122
BspACI CCGC 5 cut(s) 141, 195, 197, 683, 686
BspANI GGCC 7 cut(s) 374, 657, 867, 890, 908, 1181, 1190
BspCNI CTCAG 3 cut(s) 468, 610, 898
BspDI ATCGAT 1 cut(s) 531
BspFNI CGCG 1 cut(s) 197
BspHI TCATGA 1 cut(s) 363
BspLI GGNNCC 5 cut(s) 615, 670, 793, 1049, 1124
BspMI ACCTGC 1 cut(s) 1083
BspOI GCTAGC 1 cut(s) 1082
BspPI GGATC 4 cut(s) 1042, 1055, 1117, 1130
BspT104I TTCGAA 1 cut(s) 855
BspT107I GGYRCC 2 cut(s) 613, 791
BsrDI GCAATG 1 cut(s) 909
BsrFI RCCGGY 3 cut(s) 383, 488, 583
BssAI RCCGGY 3 cut(s) 383, 488, 583
BssECI CCNNGG 5 cut(s) 195, 295, 467, 868, 903
BssMI GATC 5 cut(s) 366, 528, 560, 1047, 1122
BssT1I CCWWGG 2 cut(s) 295, 868
Bst2UI CCWGG 1 cut(s) 904
Bst4CI ACNGT 1 cut(s) 223
Bst6I CTCTTC 2 cut(s) 162, 594
BstBAI YACGTR 1 cut(s) 415
BstBI TTCGAA 1 cut(s) 855
BstC8I GCNNGC 1 cut(s) 1080
BstDEI CTNAG 5 cut(s) 455, 573, 618, 885, 1118
BstDSI CCRYGG 2 cut(s) 195, 467
BstF5I GGATG 4 cut(s) 206, 408, 601, 1169
BstFNI CGCG 1 cut(s) 197
BstKTI GATC 5 cut(s) 369, 531, 563, 1050, 1125
BstMAI GTCTC 3 cut(s) 115, 307, 1176
BstMBI GATC 5 cut(s) 366, 528, 560, 1047, 1122
BstMCI CGRYCG 1 cut(s) 658
BstMWI GCNNNNNNNGC 4 cut(s) 380, 444, 718, 1187
BstNI CCWGG 1 cut(s) 904
BstSCI CCNGG 1 cut(s) 902
BstUI CGCG 1 cut(s) 197
BstV1I GCAGC 4 cut(s) 367, 405, 842, 1094
BstV2I GAAGAC 1 cut(s) 1018
BstX2I RGATCY 3 cut(s) 560, 1047, 1122
BstYI RGATCY 3 cut(s) 560, 1047, 1122
BstZI CGGCCG 1 cut(s) 655
Bsu15I ATCGAT 1 cut(s) 531
Bsu36I CCTNAGG 1 cut(s) 618
BsuRI GGCC 7 cut(s) 374, 657, 867, 890, 908, 1181, 1190
BsuTUI ATCGAT 1 cut(s) 531
BtgI CCRYGG 2 cut(s) 195, 467
BtgZI GCGATG 1 cut(s) 481
BtsCI GGATG 4 cut(s) 206, 408, 601, 1169
BtsI GCAGTG 1 cut(s) 578
BtsIMutI CAGTG 2 cut(s) 578, 774
BveI ACCTGC 1 cut(s) 1083
Cac8I GCNNGC 1 cut(s) 1080
CaiI CAGNNNCTG 1 cut(s) 742
CciI TCATGA 1 cut(s) 363
Cfr10I RCCGGY 3 cut(s) 383, 488, 583
Cfr13I GGNCC 3 cut(s) 865, 906, 1188
Cfr42I CCGCGG 1 cut(s) 198
ClaI ATCGAT 1 cut(s) 531
CseI GACGC 1 cut(s) 434
CspCI CAANNNNNGTGG 2 cut(s) 931, 966
DdeI CTNAG 5 cut(s) 455, 573, 618, 885, 1118
DpnI GATC 5 cut(s) 368, 530, 562, 1049, 1124
DpnII GATC 5 cut(s) 366, 528, 560, 1047, 1122
EaeI YGGCCR 2 cut(s) 655, 1179
EagI CGGCCG 1 cut(s) 655
Eam1104I CTCTTC 2 cut(s) 162, 594
EarI CTCTTC 2 cut(s) 162, 594
EciI GGCGGA 1 cut(s) 701
EclXI CGGCCG 1 cut(s) 655
Eco130I CCWWGG 2 cut(s) 295, 868
Eco147I AGGCCT 1 cut(s) 374
Eco32I GATATC 2 cut(s) 732, 783
Eco52I CGGCCG 1 cut(s) 655
Eco72I CACGTG 1 cut(s) 415
Eco81I CCTNAGG 1 cut(s) 618
EcoRII CCWGG 1 cut(s) 902
EcoRV GATATC 2 cut(s) 732, 783
EcoT14I CCWWGG 2 cut(s) 295, 868
ErhI CCWWGG 2 cut(s) 295, 868
FaqI GGGAC 3 cut(s) 164, 532, 789
FauI CCCGC 2 cut(s) 148, 190
FbaI TGATCA 1 cut(s) 366
FblI GTMKAC 1 cut(s) 225
Fnu4HI GCNGC 5 cut(s) 381, 419, 684, 831, 1083
FokI GGATG 4 cut(s) 213, 395, 608, 1176
Fsp4HI GCNGC 5 cut(s) 381, 419, 684, 831, 1083
FspBI CTAG 4 cut(s) 260, 395, 1079, 1101
GluI GCNGC 5 cut(s) 381, 419, 684, 831, 1083
GsaI CCCAGC 2 cut(s) 752, 1047
GsuI CTGGAG 1 cut(s) 764
HaeIII GGCC 7 cut(s) 374, 657, 867, 890, 908, 1181, 1190
HapII CCGG 6 cut(s) 332, 384, 422, 489, 584, 672
HgaI GACGC 1 cut(s) 434
HincII GTYRAC 1 cut(s) 1072
HindII GTYRAC 1 cut(s) 1072
HinfI GANTC 4 cut(s) 692, 697, 802, 1023
HpaII CCGG 6 cut(s) 332, 384, 422, 489, 584, 672
HphI GGTGA 3 cut(s) 67, 598, 931
Hpy166II GTNNAC 2 cut(s) 226, 1072
Hpy188I TCNGA 2 cut(s) 117, 217
Hpy188III TCNNGA 2 cut(s) 364, 743
Hpy8I GTNNAC 2 cut(s) 226, 1072
HpyAV CCTTC 4 cut(s) 176, 711, 851, 1013
HpyCH4III ACNGT 1 cut(s) 223
HpyCH4IV ACGT 1 cut(s) 414
HpyCH4V TGCA 7 cut(s) 210, 266, 631, 879, 914, 1037, 1108
HpyF10VI GCNNNNNNNGC 4 cut(s) 380, 444, 718, 1187
HpyF3I CTNAG 5 cut(s) 455, 573, 618, 885, 1118
HpySE526I ACGT 1 cut(s) 414
Ksp22I TGATCA 1 cut(s) 366
KspI CCGCGG 1 cut(s) 198
Kzo9I GATC 5 cut(s) 366, 528, 560, 1047, 1122
LmnI GCTCC 1 cut(s) 745
Lsp1109I GCAGC 4 cut(s) 367, 405, 842, 1094
LweI GCATC 3 cut(s) 191, 730, 1046
MaeI CTAG 4 cut(s) 260, 395, 1079, 1101
MaeII ACGT 1 cut(s) 414
MaeIII GTNAC 1 cut(s) 635
MalI GATC 5 cut(s) 368, 530, 562, 1049, 1124
MboI GATC 5 cut(s) 366, 528, 560, 1047, 1122
MfeI CAATTG 1 cut(s) 948
MflI RGATCY 3 cut(s) 560, 1047, 1122
MhlI GDGCHC 1 cut(s) 664
MlsI TGGCCA 1 cut(s) 1181
MluCI AATT 8 cut(s) 39, 211, 327, 753, 848, 948, 954, 1011
MluNI TGGCCA 1 cut(s) 1181
MlyI GAGTC 2 cut(s) 811, 1032
MmeI TCCRAC 2 cut(s) 70, 943
Mox20I TGGCCA 1 cut(s) 1181
MscI TGGCCA 1 cut(s) 1181
MslI CAYNNNNRTG 5 cut(s) 413, 500, 630, 642, 657
Msp20I TGGCCA 1 cut(s) 1181
MspA1I CMGCKG 2 cut(s) 197, 1043
MspI CCGG 6 cut(s) 332, 384, 422, 489, 584, 672
MspR9I CCNGG 1 cut(s) 904
MunI CAATTG 1 cut(s) 948
Mva1269I GAATGC 3 cut(s) 66, 212, 1110
MvaI CCWGG 1 cut(s) 904
MvnI CGCG 1 cut(s) 197
MwoI GCNNNNNNNGC 4 cut(s) 380, 444, 718, 1187
NdeII GATC 5 cut(s) 366, 528, 560, 1047, 1122
NheI GCTAGC 1 cut(s) 1078
NlaIV GGNNCC 5 cut(s) 615, 670, 793, 1049, 1124
NmuCI GTSAC 1 cut(s) 635
NspV TTCGAA 1 cut(s) 855
OliI CACNNNNGTG 1 cut(s) 657
PagI TCATGA 1 cut(s) 363
PceI AGGCCT 1 cut(s) 374
PctI GAATGC 3 cut(s) 66, 212, 1110
PfeI GAWTC 2 cut(s) 692, 697
PkrI GCNGC 5 cut(s) 382, 420, 685, 832, 1084
PleI GAGTC 2 cut(s) 810, 1031
PmaCI CACGTG 1 cut(s) 415
PmlI CACGTG 1 cut(s) 415
PpsI GAGTC 2 cut(s) 810, 1031
Ppu21I YACGTR 1 cut(s) 415
Psp6I CCWGG 1 cut(s) 902
PspCI CACGTG 1 cut(s) 415
PspFI CCCAGC 2 cut(s) 748, 1043
PspGI CCWGG 1 cut(s) 902
PspN4I GGNNCC 5 cut(s) 615, 670, 793, 1049, 1124
PspPI GGNCC 3 cut(s) 865, 906, 1188
PstNI CAGNNNCTG 1 cut(s) 742
PsuI RGATCY 3 cut(s) 560, 1047, 1122
PvuII CAGCTG 1 cut(s) 1043
RseI CAYNNNNRTG 5 cut(s) 413, 500, 630, 642, 657
SacII CCGCGG 1 cut(s) 198
SatI GCNGC 5 cut(s) 381, 419, 684, 831, 1083
Sau3AI GATC 5 cut(s) 366, 528, 560, 1047, 1122
Sau96I GGNCC 3 cut(s) 865, 906, 1188
SchI GAGTC 2 cut(s) 811, 1032
ScrFI CCNGG 1 cut(s) 904
SduI GDGCHC 1 cut(s) 664
SfaNI GCATC 3 cut(s) 191, 730, 1046
SfiI GGCCNNNNNGGCC 1 cut(s) 1187
Sfr303I CCGCGG 1 cut(s) 198
SfuI TTCGAA 1 cut(s) 855
SgrBI CCGCGG 1 cut(s) 198
SmiMI CAYNNNNRTG 5 cut(s) 413, 500, 630, 642, 657
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
Sse9I AATT 8 cut(s) 39, 211, 327, 753, 848, 948, 954, 1011
SseBI AGGCCT 1 cut(s) 374
SsiI CCGC 5 cut(s) 141, 195, 197, 683, 686
SspMI CTAG 4 cut(s) 260, 395, 1079, 1101
StuI AGGCCT 1 cut(s) 374
StyD4I CCNGG 1 cut(s) 902
StyI CCWWGG 2 cut(s) 295, 868
TaaI ACNGT 1 cut(s) 223
TaiI ACGT 1 cut(s) 417
TaqI TCGA 5 cut(s) 531, 695, 708, 724, 855
TasI AATT 8 cut(s) 39, 211, 327, 753, 848, 948, 954, 1011
TauI GCSGC 1 cut(s) 686
TfiI GAWTC 2 cut(s) 692, 697
TscAI CASTG 2 cut(s) 585, 774
TseFI GTSAC 1 cut(s) 635
TseI GCWGC 4 cut(s) 380, 418, 830, 1082
Tsp45I GTSAC 1 cut(s) 635
TspDTI ATGAA 8 cut(s) 140, 352, 397, 484, 612, 620, 752, 1109
TspRI CASTG 2 cut(s) 585, 774
XapI RAATTY 3 cut(s) 39, 327, 753
XcmI CCANNNNNNNNNTGG 1 cut(s) 916
XmiI GTMKAC 1 cut(s) 225
XspI CTAG 4 cut(s) 260, 395, 1079, 1101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.