Rw5G013620

Zinc transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0002306
Physical Location & Seq
Forward (+)
16115857 .. 16117854
1998 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G013620.1

Sequence Viewer

Length: 1071 bp
ATGAGAAAGCTTACTCTATCTTCCACTCTTCTTCTTCTTTGGCTGTTCGTCCCCATCTTGGTTTCTGCAGAATGTACTAGTAGTGATGAATCCCAAGGCCGCGACAAGGGGGAGGCTCTCAAGTTCAAGCTAGTTGCAATAAGTTCAATCCTCACAGCCAGTGCTATTGGTGTCTCTCTCCCAATGTTGGGCAAGAAAATCCCAACTTTGCGTCCTGAAAATGATATTTTCTTCATGATCAAAGCCTTTGCAGCCGGTGTGATACTAGCCACCGGGTTCATCCATGTCTTGCCGGATGCATTTGAAAGCTTAACAAGCCCCTGCCTCAGCCAAAGGCCATGGGGGGATTTCCCGTTCACCGGCTTCATTGCAATGCTTTCGGCTATAGGGACGATGATGATCGACACCTTTGCTACTAGCTATTATAGAAGATCACATTTCAATAAAGCACTACCAGTGAAAGATGACCAAGAAATGAATGGCGTGCATGATGGTCATGTTCATGTTCATGTTCATACTCATGCCACACATGGCCACGCCCATGGATCGGACGCGATAGTCTTGGAGGATTCATCGTCTTCTTTCGAGCTCGTCAGGCGTCGAATAATATCACAGGTCCTGGAGCTTGGGATTGTGGTTCATTCTGTAATCATTGGAGTATCTTTAGGTGCCTCTCAGAGTCCCAAGACAATCAAGCCTCTAGTTGCAGCGCTGACATTCCATCAATTTTTTGAAGGCATGGGCCTTGGCGGTTGCATCTGTCAGGCTAACTTCAAGTCGAAGGCCATTGCAACTATGGTACTTTTCTTCTCCCTCACCACCCCAATTGGAATAGCTGTTGGAATGGGGGTGTCAAGTTTTTACAAGGAGAATAGCAGTGCTGCTCTGATTGTGGAAGGAGCATTCAACTCTGCTTCAGCTGGGATCCTAATCTACATGGCTCTGGTTGACCTTCTAGCAGCTGACTTTATGAATCCTAGAATGCAGAGTAACCTTAGGATCCAGCTTGGGGCTAATCTTTCACTTGTTTTAGGGTCAGGATGTATGTCTCTCTTGGCCAAATGGGCATGA

Protein Analysis

356

Amino Acids

38.23

Weight (kDa)

7.75

Isoelectric Point (pI)

35.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zip PF02535 41 - 353 1.1e-82 ZIP Zinc transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 557
AccB1I GGYRCC 1 cut(s) 668
AccII CGCG 2 cut(s) 102, 554
AciI CCGC 2 cut(s) 100, 750
AclWI GGATC 5 cut(s) 553, 919, 932, 994, 1007
AcoI YGGCCR 2 cut(s) 532, 1056
AcuI CTGAAG 1 cut(s) 900
AcyI GRCGYC 1 cut(s) 598
AfaI GTAC 2 cut(s) 76, 801
AfeI AGCGCT 1 cut(s) 711
AfiI CCNNNNNNNGG 7 cut(s) 58, 106, 187, 188, 359, 547, 1009
AgsI TTSAA 7 cut(s) 127, 147, 305, 442, 734, 775, 907
AhlI ACTAGT 1 cut(s) 77
AjnI CCWGG 1 cut(s) 618
AloI GAACNNNNNNTCC 2 cut(s) 338, 370
Alw21I GWGCWC 1 cut(s) 591
Alw26I GTCTC 2 cut(s) 178, 1053
AlwI GGATC 5 cut(s) 553, 919, 932, 994, 1007
AlwNI CAGNNNCTG 1 cut(s) 619
Aor51HI AGCGCT 1 cut(s) 711
AoxI GGCC 6 cut(s) 97, 335, 532, 742, 783, 1056
ApeKI GCWGC 4 cut(s) 251, 707, 881, 959
AspLEI GCGC 1 cut(s) 712
AspS9I GGNCC 2 cut(s) 616, 742
AsuC2I CCSGG 1 cut(s) 274
AsuHPI GGTGA 2 cut(s) 349, 808
AvaII GGWCC 1 cut(s) 616
AxyI CCTNAGG 1 cut(s) 995
BalI TGGCCA 2 cut(s) 534, 1058
BamHI GGATCC 2 cut(s) 924, 999
BanI GGYRCC 1 cut(s) 668
BanII GRGCYC 1 cut(s) 591
BbsI GAAGAC 1 cut(s) 570
Bbv12I GWGCWC 1 cut(s) 591
BbvCI CCTCAGC 1 cut(s) 326
BbvI GCAGC 4 cut(s) 263, 719, 868, 971
BccI CCATC 3 cut(s) 62, 485, 729
BcgI CGANNNNNNTGC 4 cut(s) 360, 392, 394, 426
BciT130I CCWGG 1 cut(s) 620
BclI TGATCA 1 cut(s) 237
BcnI CCSGG 1 cut(s) 274
BcoDI GTCTC 2 cut(s) 178, 1053
BcuI ACTAGT 1 cut(s) 77
BfaI CTAG 7 cut(s) 78, 131, 266, 417, 701, 956, 978
BfmI CTRYAG 2 cut(s) 66, 384
BfoI RGCGCY 1 cut(s) 713
BglI GCCNNNNNGGC 1 cut(s) 1064
BisI GCNGC 5 cut(s) 100, 252, 708, 882, 960
BlsI GCNGC 5 cut(s) 101, 253, 709, 883, 961
Bme1390I CCNGG 2 cut(s) 274, 620
Bme18I GGWCC 1 cut(s) 616
BmgT120I GGNCC 2 cut(s) 616, 742
BmiI GGNNCC 3 cut(s) 670, 926, 1001
BmrFI CCNGG 2 cut(s) 274, 620
BmsI GCATC 2 cut(s) 286, 765
BpiI GAAGAC 1 cut(s) 570
BpmI CTGGAG 1 cut(s) 641
Bpu10I CCTNAGC 1 cut(s) 326
BpuEI CTTGAG 1 cut(s) 104
BpuMI CCSGG 1 cut(s) 274
BsaBI GATNNNNATC 2 cut(s) 398, 929
BsaHI GRCGYC 1 cut(s) 598
BsaJI CCNNGG 4 cut(s) 94, 338, 541, 745
Bsc4I CCNNNNNNNGG 7 cut(s) 58, 106, 187, 188, 359, 547, 1009
Bse118I RCCGGY 2 cut(s) 254, 359
Bse1I ACTGG 2 cut(s) 159, 455
Bse21I CCTNAGG 1 cut(s) 995
Bse3DI GCAATG 3 cut(s) 366, 378, 786
Bse8I GATNNNNATC 2 cut(s) 398, 929
BseBI CCWGG 1 cut(s) 620
BseDI CCNNGG 4 cut(s) 94, 338, 541, 745
BseGI GGATG 3 cut(s) 279, 301, 1046
BseJI GATNNNNATC 2 cut(s) 398, 929
BseLI CCNNNNNNNGG 7 cut(s) 58, 106, 187, 188, 359, 547, 1009
BseMI GCAATG 3 cut(s) 366, 378, 786
BseMII CTCAG 2 cut(s) 340, 689
BseNI ACTGG 2 cut(s) 159, 455
BseXI GCAGC 4 cut(s) 263, 719, 868, 971
BseYI CCCAGC 1 cut(s) 920
Bsh1236I CGCG 2 cut(s) 102, 554
BshFI GGCC 6 cut(s) 99, 337, 534, 744, 785, 1058
BshNI GGYRCC 1 cut(s) 668
BsiHKAI GWGCWC 1 cut(s) 591
BsiSI CCGG 4 cut(s) 255, 273, 293, 360
BslFI GGGAC 3 cut(s) 35, 403, 666
BslI CCNNNNNNNGG 7 cut(s) 58, 106, 187, 188, 359, 547, 1009
BsmAI GTCTC 2 cut(s) 178, 1053
BsmFI GGGAC 3 cut(s) 35, 403, 666
BsmI GAATGC 2 cut(s) 902, 987
BsnI GGCC 6 cut(s) 99, 337, 534, 744, 785, 1058
Bsp1286I GDGCHC 1 cut(s) 591
Bsp143I GATC 6 cut(s) 237, 399, 431, 545, 924, 999
Bsp19I CCATGG 2 cut(s) 338, 541
BspACI CCGC 2 cut(s) 100, 750
BspANI GGCC 6 cut(s) 99, 337, 534, 744, 785, 1058
BspCNI CTCAG 2 cut(s) 339, 688
BspFNI CGCG 2 cut(s) 102, 554
BspHI TCATGA 1 cut(s) 234
BspLI GGNNCC 3 cut(s) 670, 926, 1001
BspMAI CTGCAG 1 cut(s) 70
BspPI GGATC 5 cut(s) 553, 919, 932, 994, 1007
BspT107I GGYRCC 1 cut(s) 668
BsrDI GCAATG 3 cut(s) 366, 378, 786
BsrFI RCCGGY 2 cut(s) 254, 359
BsrI ACTGG 2 cut(s) 159, 455
BssAI RCCGGY 2 cut(s) 254, 359
BssECI CCNNGG 4 cut(s) 94, 338, 541, 745
BssMI GATC 6 cut(s) 237, 399, 431, 545, 924, 999
BssNI GRCGYC 1 cut(s) 598
BssT1I CCWWGG 4 cut(s) 94, 338, 541, 745
Bst2UI CCWGG 1 cut(s) 620
Bst6I CTCTTC 1 cut(s) 33
BstACI GRCGYC 1 cut(s) 598
BstC8I GCNNGC 1 cut(s) 485
BstDEI CTNAG 3 cut(s) 326, 675, 995
BstDSI CCRYGG 2 cut(s) 338, 541
BstF5I GGATG 3 cut(s) 279, 301, 1046
BstFNI CGCG 2 cut(s) 102, 554
BstH2I RGCGCY 1 cut(s) 713
BstHHI GCGC 1 cut(s) 712
BstKTI GATC 6 cut(s) 240, 402, 434, 548, 927, 1002
BstMAI GTCTC 2 cut(s) 178, 1053
BstMBI GATC 6 cut(s) 237, 399, 431, 545, 924, 999
BstMWI GCNNNNNNNGC 4 cut(s) 251, 315, 595, 1064
BstNI CCWGG 1 cut(s) 620
BstSCI CCNGG 2 cut(s) 272, 618
BstSFI CTRYAG 2 cut(s) 66, 384
BstUI CGCG 2 cut(s) 102, 554
BstV1I GCAGC 4 cut(s) 263, 719, 868, 971
BstV2I GAAGAC 1 cut(s) 570
BstX2I RGATCY 2 cut(s) 924, 999
BstXI CCANNNNNNTGG 1 cut(s) 542
BstYI RGATCY 2 cut(s) 924, 999
Bsu36I CCTNAGG 1 cut(s) 995
BsuRI GGCC 6 cut(s) 99, 337, 534, 744, 785, 1058
BtgI CCRYGG 2 cut(s) 338, 541
BtsCI GGATG 3 cut(s) 279, 301, 1046
BtsI GCAGTG 1 cut(s) 883
BtsIMutI CAGTG 3 cut(s) 166, 462, 883
Cac8I GCNNGC 1 cut(s) 485
CaiI CAGNNNCTG 1 cut(s) 619
CciI TCATGA 1 cut(s) 234
CfoI GCGC 1 cut(s) 712
Cfr10I RCCGGY 2 cut(s) 254, 359
Cfr13I GGNCC 2 cut(s) 616, 742
CseI GACGC 3 cut(s) 200, 560, 587
Csp6I GTAC 2 cut(s) 75, 800
CspCI CAANNNNNGTGG 2 cut(s) 808, 843
CviQI GTAC 2 cut(s) 75, 800
DdeI CTNAG 3 cut(s) 326, 675, 995
DpnI GATC 6 cut(s) 239, 401, 433, 547, 926, 1001
DpnII GATC 6 cut(s) 237, 399, 431, 545, 924, 999
DrdI GACNNNNNNGTC 1 cut(s) 557
DseDI GACNNNNNNGTC 1 cut(s) 557
EaeI YGGCCR 2 cut(s) 532, 1056
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
Ecl136II GAGCTC 1 cut(s) 589
Eco130I CCWWGG 4 cut(s) 94, 338, 541, 745
Eco24I GRGCYC 1 cut(s) 591
Eco47I GGWCC 1 cut(s) 616
Eco47III AGCGCT 1 cut(s) 711
Eco53kI GAGCTC 1 cut(s) 589
Eco57I CTGAAG 1 cut(s) 900
Eco81I CCTNAGG 1 cut(s) 995
EcoICRI GAGCTC 1 cut(s) 589
EcoO109I RGGNCCY 1 cut(s) 616
EcoRII CCWGG 1 cut(s) 618
EcoT14I CCWWGG 4 cut(s) 94, 338, 541, 745
EcoT22I ATGCAT 1 cut(s) 301
EcoT38I GRGCYC 1 cut(s) 591
ErhI CCWWGG 4 cut(s) 94, 338, 541, 745
FaqI GGGAC 3 cut(s) 35, 403, 666
FbaI TGATCA 1 cut(s) 237
Fnu4HI GCNGC 5 cut(s) 100, 252, 708, 882, 960
FokI GGATG 3 cut(s) 266, 308, 1053
FriOI GRGCYC 1 cut(s) 591
Fsp4HI GCNGC 5 cut(s) 100, 252, 708, 882, 960
FspBI CTAG 7 cut(s) 78, 131, 266, 417, 701, 956, 978
GlaI GCGC 1 cut(s) 711
GluI GCNGC 5 cut(s) 100, 252, 708, 882, 960
GsaI CCCAGC 1 cut(s) 924
GsuI CTGGAG 1 cut(s) 641
HaeII RGCGCY 1 cut(s) 713
HaeIII GGCC 6 cut(s) 99, 337, 534, 744, 785, 1058
HapII CCGG 4 cut(s) 255, 273, 293, 360
HgaI GACGC 3 cut(s) 200, 560, 587
HhaI GCGC 1 cut(s) 712
Hin1I GRCGYC 1 cut(s) 598
Hin6I GCGC 1 cut(s) 710
HinP1I GCGC 1 cut(s) 710
HincII GTYRAC 1 cut(s) 949
HindII GTYRAC 1 cut(s) 949
HindIII AAGCTT 2 cut(s) 8, 307
HinfI GANTC 4 cut(s) 89, 569, 679, 973
HpaII CCGG 4 cut(s) 255, 273, 293, 360
HphI GGTGA 2 cut(s) 349, 808
Hpy166II GTNNAC 2 cut(s) 357, 949
Hpy188I TCNGA 3 cut(s) 550, 678, 888
Hpy188III TCNNGA 3 cut(s) 215, 235, 1038
Hpy8I GTNNAC 2 cut(s) 357, 949
Hpy99I CGWCG 1 cut(s) 603
HpyAV CCTTC 4 cut(s) 728, 775, 890, 962
HpyF10VI GCNNNNNNNGC 4 cut(s) 251, 315, 595, 1064
HpyF3I CTNAG 3 cut(s) 326, 675, 995
Hsp92I GRCGYC 1 cut(s) 598
HspAI GCGC 1 cut(s) 710
Ksp22I TGATCA 1 cut(s) 237
Kzo9I GATC 6 cut(s) 237, 399, 431, 545, 924, 999
LmnI GCTCC 2 cut(s) 622, 899
Lsp1109I GCAGC 4 cut(s) 263, 719, 868, 971
LweI GCATC 2 cut(s) 286, 765
MaeI CTAG 7 cut(s) 78, 131, 266, 417, 701, 956, 978
MaeIII GTNAC 1 cut(s) 989
MalI GATC 6 cut(s) 239, 401, 433, 547, 926, 1001
MboI GATC 6 cut(s) 237, 399, 431, 545, 924, 999
MboII GAAGA 8 cut(s) 12, 20, 23, 26, 223, 441, 570, 799
MfeI CAATTG 1 cut(s) 825
MflI RGATCY 2 cut(s) 924, 999
MhlI GDGCHC 1 cut(s) 591
MlsI TGGCCA 2 cut(s) 534, 1058
MluCI AATT 2 cut(s) 725, 825
MluNI TGGCCA 2 cut(s) 534, 1058
MlyI GAGTC 1 cut(s) 688
MmeI TCCRAC 1 cut(s) 820
MnlI CCTC 7 cut(s) 106, 161, 335, 559, 682, 708, 824
Mox20I TGGCCA 2 cut(s) 534, 1058
Mph1103I ATGCAT 1 cut(s) 301
MscI TGGCCA 2 cut(s) 534, 1058
MseI TTAA 1 cut(s) 311
MslI CAYNNNNRTG 5 cut(s) 371, 501, 507, 519, 540
Msp20I TGGCCA 2 cut(s) 534, 1058
MspA1I CMGCKG 2 cut(s) 920, 962
MspI CCGG 4 cut(s) 255, 273, 293, 360
MspR9I CCNGG 2 cut(s) 274, 620
MunI CAATTG 1 cut(s) 825
Mva1269I GAATGC 2 cut(s) 902, 987
MvaI CCWGG 1 cut(s) 620
MvnI CGCG 2 cut(s) 102, 554
MwoI GCNNNNNNNGC 4 cut(s) 251, 315, 595, 1064
NciI CCSGG 1 cut(s) 274
NcoI CCATGG 2 cut(s) 338, 541
NdeII GATC 6 cut(s) 237, 399, 431, 545, 924, 999
NlaIV GGNNCC 3 cut(s) 670, 926, 1001
NsiI ATGCAT 1 cut(s) 301
PagI TCATGA 1 cut(s) 234
PctI GAATGC 2 cut(s) 902, 987
PfeI GAWTC 3 cut(s) 89, 569, 973
PfoI TCCNGGA 1 cut(s) 618
PkrI GCNGC 5 cut(s) 101, 253, 709, 883, 961
PleI GAGTC 1 cut(s) 687
PpsI GAGTC 1 cut(s) 687
PpuMI RGGWCCY 1 cut(s) 616
Psp124BI GAGCTC 1 cut(s) 591
Psp5II RGGWCCY 1 cut(s) 616
Psp6I CCWGG 1 cut(s) 618
PspFI CCCAGC 1 cut(s) 920
PspGI CCWGG 1 cut(s) 618
PspN4I GGNNCC 3 cut(s) 670, 926, 1001
PspPI GGNCC 2 cut(s) 616, 742
PspPPI RGGWCCY 1 cut(s) 616
PstI CTGCAG 1 cut(s) 70
PstNI CAGNNNCTG 1 cut(s) 619
PsuI RGATCY 2 cut(s) 924, 999
PvuII CAGCTG 2 cut(s) 920, 962
RsaI GTAC 2 cut(s) 76, 801
RsaNI GTAC 2 cut(s) 75, 800
RseI CAYNNNNRTG 5 cut(s) 371, 501, 507, 519, 540
SacI GAGCTC 1 cut(s) 591
SaqAI TTAA 1 cut(s) 311
SatI GCNGC 5 cut(s) 100, 252, 708, 882, 960
Sau3AI GATC 6 cut(s) 237, 399, 431, 545, 924, 999
Sau96I GGNCC 2 cut(s) 616, 742
SchI GAGTC 1 cut(s) 688
ScrFI CCNGG 2 cut(s) 274, 620
SduI GDGCHC 1 cut(s) 591
SfaNI GCATC 2 cut(s) 286, 765
SfcI CTRYAG 2 cut(s) 66, 384
SinI GGWCC 1 cut(s) 616
SmiMI CAYNNNNRTG 5 cut(s) 371, 501, 507, 519, 540
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
SpeI ACTAGT 1 cut(s) 77
Sse9I AATT 2 cut(s) 725, 825
SsiI CCGC 2 cut(s) 100, 750
SspMI CTAG 7 cut(s) 78, 131, 266, 417, 701, 956, 978
SstI GAGCTC 1 cut(s) 591
StyD4I CCNGG 2 cut(s) 272, 618
StyI CCWWGG 4 cut(s) 94, 338, 541, 745
TaqI TCGA 4 cut(s) 402, 585, 601, 779
TasI AATT 2 cut(s) 725, 825
TatI WGTACW 1 cut(s) 74
TauI GCSGC 1 cut(s) 102
TfiI GAWTC 3 cut(s) 89, 569, 973
Tru1I TTAA 1 cut(s) 311
Tru9I TTAA 1 cut(s) 311
TscAI CASTG 3 cut(s) 166, 462, 883
TseI GCWGC 4 cut(s) 251, 707, 881, 959
TspRI CASTG 3 cut(s) 166, 462, 883
VpaK11BI GGWCC 1 cut(s) 616
XcmI CCANNNNNNNNNTGG 2 cut(s) 476, 793
XspI CTAG 7 cut(s) 78, 131, 266, 417, 701, 956, 978
Zsp2I ATGCAT 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.