Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002306

Physical Location & Seq

Genomic Coordinates Reverse (-)

18805317 .. 18806470

Gene Structure 1154 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG170000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGCTAAGACCAGAGAAAGATATCTTCTTCATTGTCAAGGCTTTTGCGGCAGGGGTGATTCTAGCGACTGCCTTCATTCACGTACTACCTGAGGCCTTTACGACCTTGACTTCACCATGCCTAAATGAAAATCCGTGGGGCAGATTCCCTTTCACAGGCTTTCTTTGCATGATGTCTGCCATCGGAACATTGATGGTTGATGCAATGGCAACTGGGTACTACAAAAGGTCAAGCTTGAAGTCATCCCAGGTGAGAATGGATGAAGAGAGCAGAGCTGGTCATGGTGCCACACAGGGTAGTAATGCTCAAGACTCTGAAGAATTGAGATCATCATTAGAATTATTCAAGCACAGGGTTATTGCGCAAGTGTTGGAGCTGGGAATTCTAGTCCATTCAGTAATAATTGGAATATCAGTGGGTGCATCCCAGGACATAGATACAATAAAGCCTCTCCTGGTGGCTTTGTCTTTCCATCAATTCTTTGAGGGCATTAGTCTCGGTGGCTGTATCTCTCAGGCGCAATTCAAGTCTCTGTCTGAAGCCATAATGGTGGCATTTTTCTCCCTTACAACCCCCATTGGAATTGCAATTGGTATTGGAATATCAAATGTTTACAGTGAGACTAGCCCAACTGCTCTAATTGTTCAAGGAACTTTGAATTCAGCTGCAGCTGGAATTTTAATTTACATGGCTCTTGTTGACCTACTTGCAGCAGATTTCATGAGCCCTAGAATGCAAGGAAATATGAGGATTCAATTGGGGTCATATATTTCGCTTCTTCTAGGGACTGGCTGTATGTCTCTCTTGGCAAAATGGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0071944 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

273

Amino Acids

29.3

Weight (kDa)

5.94

Isoelectric Point (pI)

35.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	4 - 270	2.1e-73	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12750
fragaria_vesca	FvH4_3g12900 FvH4_3g14490 FvH4_3g14490
malus_domestica	MD05G1236500.v1.1 MD05G1236600.v1.1 MD05G1247200.v1.1 MD10G1227800.v1.1
prunus_persica	Prupe.4G117200_v2.0.a1 Prupe.4G129600_v2.0.a1 Prupe.4G129700_v2.0.a1
pyrus_communis	pycom05g21350 pycom05g22310 pycom10g19130
rosa_chinensis	RchiOBHm_Chr5g0021001 RchiOBHm_Chr5g0023861 RchiOBHm_Chr5g0023871
rosa_laevigata	RLG00000032576 RLG00000032741 RLG00000032742
rosa_multiflora	Rmu_sc0001372.1_g000002 Rmu_sc0001372.1_g000005 Rmu_ssc0000027.1_g000003 Rmu_ssc0000244.1_g000011
rosa_roxburghii	Rroxscaffold_1G00055380 Rroxscaffold_1G00057480
rosa_rugosa	Rorug05G0063700 Rorug05G0079800 Rorug05G0079900
rosa_samantha	Rh5AG153300 Rh5AG169900 Rh5AG170000 Rh5BG153000 Rh5BG167200 Rh5BG167300 Rh5CG165600 Rh5CG182800 Rh5DG152400 Rh5DG169300
rosa_wichuraiana	Rw5G013620 Rw5G015360 Rw5G015370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	363
AccB1I	GGYRCC	1 cut(s)	284
AciI	CCGC	1 cut(s)	47
AcsI	RAATTY	3 cut(s)	381, 658, 675
AcuI	CTGAAG	2 cut(s)	336, 558
AfaI	GTAC	2 cut(s)	84, 218
AfiI	CCNNNNNNNGG	1 cut(s)	155
AgsI	TTSAA	6 cut(s)	238, 346, 526, 647, 658, 755
AjnI	CCWGG	3 cut(s)	246, 426, 453
AluBI	AGCT	5 cut(s)	234, 275, 376, 665, 671
AluI	AGCT	5 cut(s)	234, 275, 376, 665, 671
Alw26I	GTCTC	4 cut(s)	500, 534, 614, 804
AoxI	GGCC	1 cut(s)	93
ApeKI	GCWGC	3 cut(s)	665, 668, 710
ApoI	RAATTY	3 cut(s)	381, 658, 675
AspLEI	GCGC	2 cut(s)	364, 520
AsuHPI	GGTGA	3 cut(s)	67, 105, 262
AxyI	CCTNAGG	1 cut(s)	90
BanI	GGYRCC	1 cut(s)	284
BanII	GRGCYC	1 cut(s)	728
BbvI	GCAGC	3 cut(s)	652, 680, 722
BccI	CCATC	3 cut(s)	187, 188, 480
BcgI	CGANNNNNNTGC	2 cut(s)	478, 512
BciT130I	CCWGG	3 cut(s)	248, 428, 455
BcoDI	GTCTC	4 cut(s)	500, 534, 614, 804
BfaI	CTAG	5 cut(s)	62, 386, 624, 729, 782
BfmI	CTRYAG	1 cut(s)	666
BisI	GCNGC	4 cut(s)	48, 666, 669, 711
BlsI	GCNGC	4 cut(s)	49, 667, 670, 712
Bme1390I	CCNGG	3 cut(s)	248, 428, 455
BmiI	GGNNCC	1 cut(s)	286
BmrFI	CCNGG	3 cut(s)	248, 428, 455
BmrI	ACTGGG	1 cut(s)	222
BmsI	GCATC	2 cut(s)	190, 431
BmuI	ACTGGG	1 cut(s)	222
BpuEI	CTTGAG	1 cut(s)	291
BsaAI	YACGTR	1 cut(s)	82
BsaJI	CCNNGG	3 cut(s)	134, 246, 426
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
Bse1I	ACTGG	2 cut(s)	217, 793
Bse21I	CCTNAGG	1 cut(s)	90
Bse3DI	GCAATG	1 cut(s)	210
BseBI	CCWGG	3 cut(s)	248, 428, 455
BseDI	CCNNGG	3 cut(s)	134, 246, 426
BseGI	GGATG	3 cut(s)	242, 265, 422
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseMI	GCAATG	1 cut(s)	210
BseMII	CTCAG	2 cut(s)	81, 527
BseNI	ACTGG	2 cut(s)	217, 793
BseXI	GCAGC	3 cut(s)	652, 680, 722
BseYI	CCCAGC	1 cut(s)	376
BshFI	GGCC	1 cut(s)	95
BshNI	GGYRCC	1 cut(s)	284
BslFI	GGGAC	1 cut(s)	799
BslI	CCNNNNNNNGG	1 cut(s)	155
BsmAI	GTCTC	4 cut(s)	500, 534, 614, 804
BsmFI	GGGAC	1 cut(s)	799
BsmI	GAATGC	1 cut(s)	738
BsnI	GGCC	1 cut(s)	95
Bsp1286I	GDGCHC	1 cut(s)	728
Bsp143I	GATC	1 cut(s)	326
BspACI	CCGC	1 cut(s)	47
BspANI	GGCC	1 cut(s)	95
BspCNI	CTCAG	2 cut(s)	82, 526
BspHI	TCATGA	1 cut(s)	720
BspLI	GGNNCC	1 cut(s)	286
BspMAI	CTGCAG	1 cut(s)	670
BspT107I	GGYRCC	1 cut(s)	284
BsrDI	GCAATG	1 cut(s)	210
BsrI	ACTGG	2 cut(s)	217, 793
BssECI	CCNNGG	3 cut(s)	134, 246, 426
BssMI	GATC	1 cut(s)	326
Bst2UI	CCWGG	3 cut(s)	248, 428, 455
Bst4CI	ACNGT	1 cut(s)	617
Bst6I	CTCTTC	1 cut(s)	258
BstBAI	YACGTR	1 cut(s)	82
BstDEI	CTNAG	3 cut(s)	5, 90, 513
BstDSI	CCRYGG	1 cut(s)	134
BstENI	CCTNNNNNAGG	1 cut(s)	153
BstF5I	GGATG	3 cut(s)	242, 265, 422
BstHHI	GCGC	2 cut(s)	364, 520
BstKTI	GATC	1 cut(s)	329
BstMAI	GTCTC	4 cut(s)	500, 534, 614, 804
BstMBI	GATC	1 cut(s)	326
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 165, 815
BstNI	CCWGG	3 cut(s)	248, 428, 455
BstSCI	CCNGG	3 cut(s)	246, 426, 453
BstSFI	CTRYAG	1 cut(s)	666
BstV1I	GCAGC	3 cut(s)	652, 680, 722
BstXI	CCANNNNNNTGG	1 cut(s)	550
Bsu36I	CCTNAGG	1 cut(s)	90
BsuRI	GGCC	1 cut(s)	95
BtgI	CCRYGG	1 cut(s)	134
BtsCI	GGATG	3 cut(s)	242, 265, 422
BtsIMutI	CAGTG	2 cut(s)	420, 622
CciI	TCATGA	1 cut(s)	720
CfoI	GCGC	2 cut(s)	364, 520
Csp6I	GTAC	2 cut(s)	83, 217
CviAII	CATG	5 cut(s)	117, 169, 281, 688, 721
CviQI	GTAC	2 cut(s)	83, 217
DdeI	CTNAG	3 cut(s)	5, 90, 513
DpnI	GATC	1 cut(s)	328
DpnII	GATC	1 cut(s)	326
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
Eco147I	AGGCCT	1 cut(s)	95
Eco24I	GRGCYC	1 cut(s)	728
Eco32I	GATATC	1 cut(s)	22
Eco57I	CTGAAG	2 cut(s)	336, 558
Eco81I	CCTNAGG	1 cut(s)	90
EcoNI	CCTNNNNNAGG	1 cut(s)	153
EcoRI	GAATTC	2 cut(s)	381, 658
EcoRII	CCWGG	3 cut(s)	246, 426, 453
EcoRV	GATATC	1 cut(s)	22
EcoT38I	GRGCYC	1 cut(s)	728
FaeI	CATG	5 cut(s)	120, 172, 284, 691, 724
FaqI	GGGAC	1 cut(s)	799
FatI	CATG	5 cut(s)	116, 168, 280, 687, 720
Fnu4HI	GCNGC	4 cut(s)	48, 666, 669, 711
FokI	GGATG	3 cut(s)	229, 272, 409
FriOI	GRGCYC	1 cut(s)	728
Fsp4HI	GCNGC	4 cut(s)	48, 666, 669, 711
FspBI	CTAG	5 cut(s)	62, 386, 624, 729, 782
FspI	TGCGCA	1 cut(s)	363
GlaI	GCGC	2 cut(s)	363, 519
GluI	GCNGC	4 cut(s)	48, 666, 669, 711
GsaI	CCCAGC	1 cut(s)	380
HaeIII	GGCC	1 cut(s)	95
HhaI	GCGC	2 cut(s)	364, 520
Hin1II	CATG	5 cut(s)	120, 172, 284, 691, 724
Hin6I	GCGC	2 cut(s)	362, 518
HinP1I	GCGC	2 cut(s)	362, 518
HincII	GTYRAC	1 cut(s)	700
HindII	GTYRAC	1 cut(s)	700
HindIII	AAGCTT	1 cut(s)	232
HinfI	GANTC	4 cut(s)	58, 144, 311, 751
HphI	GGTGA	3 cut(s)	67, 105, 262
Hpy166II	GTNNAC	2 cut(s)	613, 700
Hpy188I	TCNGA	3 cut(s)	185, 316, 538
Hpy188III	TCNNGA	2 cut(s)	308, 721
Hpy8I	GTNNAC	2 cut(s)	613, 700
HpyAV	CCTTC	1 cut(s)	82
HpyCH4III	ACNGT	1 cut(s)	617
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	7 cut(s)	168, 203, 422, 587, 668, 710, 736
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 165, 815
HpyF3I	CTNAG	3 cut(s)	5, 90, 513
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	5 cut(s)	120, 172, 284, 691, 724
HspAI	GCGC	2 cut(s)	362, 518
Kzo9I	GATC	1 cut(s)	326
LmnI	GCTCC	1 cut(s)	373
Lsp1109I	GCAGC	3 cut(s)	652, 680, 722
LweI	GCATC	2 cut(s)	190, 431
MaeI	CTAG	5 cut(s)	62, 386, 624, 729, 782
MaeII	ACGT	1 cut(s)	81
MalI	GATC	1 cut(s)	328
MboI	GATC	1 cut(s)	326
MboII	GAAGA	5 cut(s)	16, 19, 275, 329, 770
MfeI	CAATTG	2 cut(s)	588, 755
MhlI	GDGCHC	1 cut(s)	728
MlyI	GAGTC	1 cut(s)	305
MmeI	TCCRAC	1 cut(s)	351
MnlI	CCTC	4 cut(s)	85, 459, 478, 741
MseI	TTAA	1 cut(s)	680
MslI	CAYNNNNRTG	1 cut(s)	548
MspA1I	CMGCKG	2 cut(s)	665, 671
MspR9I	CCNGG	3 cut(s)	248, 428, 455
MunI	CAATTG	2 cut(s)	588, 755
Mva1269I	GAATGC	1 cut(s)	738
MvaI	CCWGG	3 cut(s)	248, 428, 455
MwoI	GCNNNNNNNGC	3 cut(s)	47, 165, 815
NdeII	GATC	1 cut(s)	326
NlaIII	CATG	5 cut(s)	120, 172, 284, 691, 724
NlaIV	GGNNCC	1 cut(s)	286
NsbI	TGCGCA	1 cut(s)	363
PagI	TCATGA	1 cut(s)	720
PceI	AGGCCT	1 cut(s)	95
PctI	GAATGC	1 cut(s)	738
PfeI	GAWTC	3 cut(s)	58, 144, 751
PkrI	GCNGC	4 cut(s)	49, 667, 670, 712
PleI	GAGTC	1 cut(s)	305
PpsI	GAGTC	1 cut(s)	305
Ppu21I	YACGTR	1 cut(s)	82
Psp6I	CCWGG	3 cut(s)	246, 426, 453
PspFI	CCCAGC	1 cut(s)	376
PspGI	CCWGG	3 cut(s)	246, 426, 453
PspN4I	GGNNCC	1 cut(s)	286
PstI	CTGCAG	1 cut(s)	670
PvuII	CAGCTG	2 cut(s)	665, 671
RsaI	GTAC	2 cut(s)	84, 218
RsaNI	GTAC	2 cut(s)	83, 217
RseI	CAYNNNNRTG	1 cut(s)	548
SaqAI	TTAA	1 cut(s)	680
SatI	GCNGC	4 cut(s)	48, 666, 669, 711
Sau3AI	GATC	1 cut(s)	326
SchI	GAGTC	1 cut(s)	305
ScrFI	CCNGG	3 cut(s)	248, 428, 455
SduI	GDGCHC	1 cut(s)	728
SfaNI	GCATC	2 cut(s)	190, 431
SfcI	CTRYAG	1 cut(s)	666
SmiMI	CAYNNNNRTG	1 cut(s)	548
SmlI	CTYRAG	1 cut(s)	306
SmoI	CTYRAG	1 cut(s)	306
SseBI	AGGCCT	1 cut(s)	95
SsiI	CCGC	1 cut(s)	47
SspMI	CTAG	5 cut(s)	62, 386, 624, 729, 782
StuI	AGGCCT	1 cut(s)	95
StyD4I	CCNGG	3 cut(s)	246, 426, 453
TaaI	ACNGT	1 cut(s)	617
TaiI	ACGT	1 cut(s)	84
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	3 cut(s)	58, 144, 751
Tru1I	TTAA	1 cut(s)	680
Tru9I	TTAA	1 cut(s)	680
TscAI	CASTG	2 cut(s)	420, 622
TseI	GCWGC	3 cut(s)	665, 668, 710
TspDTI	ATGAA	5 cut(s)	19, 64, 141, 276, 709
TspGWI	ACGGA	1 cut(s)	123
TspRI	CASTG	2 cut(s)	420, 622
XagI	CCTNNNNNAGG	1 cut(s)	153
XapI	RAATTY	3 cut(s)	381, 658, 675
XspI	CTAG	5 cut(s)	62, 386, 624, 729, 782

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.