Rh5CG165600

Zinc transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0002306
Physical Location & Seq
Forward (+)
15423084 .. 15425024
1941 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG165600.1

Sequence Viewer

Length: 1182 bp
ATGGAATTCAATTCCATGTCGCCATTTTTACACCAAACCCTTTGCTTTCCCAAACCCTCCTACATATACGTAGTAAGCAATAGACCATTTCATCAAACACCTTCTTTACTGAAAGCCATGAGAAAGCTTACTCTATCTTCCACTCTTCTTCTTCTTTTGCTGTTCGTCCCCATCTTGGTTTCTGCAGAATGTACCCGCAGTGATGAATCCCAAGGCCGCGACAAGGGGGAGGCTCTCAAGTTCAAGCTAGTTGCAATAAGTTCAATCCTCATAGCCAGTGCTATTGGTGTCTGTCTCCCAATGTTGGGCAAGAAAATCCCAACTTTGCGTCCTGAAAATGATATTTTCTTCATGATCAAAGCCTTTGCAGCCGGTGTGATACTAGCCACCGGGTTCATCCATGTCTTGCCGGATGCATTTGAAAGCTTAACAAGCCCCTGCCTCAGCCAAAGGCCATGGGGGGATTTCCCGTTCACCGGCTTCATTGCAATGCTTTCGGCTATAGGGACGATGATGATCGACACCTTTGCTACTAGCTATTATAGAAGATCACATTTCAATAAAGCACTGCCAGTGAAAGATGACCAAGAAATGAATGGCGTGCATGATGGTCATGTTCATGTTCATACTCATGCCACACATGGCCACGCCCATGGATCGGACGCGATAGTCTTGGAGGATTCATCGTCTTCTTTCGAGCTCGTCAGGCGACGAATAATATCACAGGTCCTGGAGCTTGGGATTGTGGTTCATTCTGTAATCATTGGAGTATCTTTAGGTGCCTCTCAGAGTCCCAAGACAATCAAGCCTCTAGTTGCAGCGCTGACATTCCATCAATTTTTTGAAGGCATGGGCCTTGGCGGTTGCATCTGCCAGGCTAACTTCAAGTCGAAGGCCATTGCAACTATGGTACTTTTCTTCTCCCTCACCACCCCAATTGGAATAGCTGTTGGAATGGGGGTGTCAAGTTTTTACAAGGAGAATAGCAGTGCTGCTCTGATTGTGGAAGGAGCATTCAACTCTGCTTCAGCTGGGATCCTAATCTACATGGCTCTGGTTGACCTTCTAGCAGCTGACTTTATGAATCCTAGAATGCAGAGTAACCTTAGGATCCAGCTTGGGGCTAATCTTTCACTTGTTTTAGGGTCAGGATGTATGTCTCTCTTGGCCAAATGGGCATGA

Protein Analysis

393

Amino Acids

42.56

Weight (kDa)

8.63

Isoelectric Point (pI)

38.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zip PF02535 80 - 390 9.5e-83 ZIP Zinc transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 668
AccB1I GGYRCC 1 cut(s) 779
AccII CGCG 2 cut(s) 219, 665
AciI CCGC 3 cut(s) 196, 217, 861
AclWI GGATC 5 cut(s) 664, 1030, 1043, 1105, 1118
AcoI YGGCCR 2 cut(s) 643, 1167
AcsI RAATTY 1 cut(s) 5
AcuI CTGAAG 1 cut(s) 1011
AfaI GTAC 2 cut(s) 193, 912
AfeI AGCGCT 1 cut(s) 822
AfiI CCNNNNNNNGG 7 cut(s) 175, 223, 304, 305, 476, 658, 1120
AgsI TTSAA 8 cut(s) 10, 244, 264, 422, 559, 845, 886, 1018
AjnI CCWGG 2 cut(s) 729, 873
AloI GAACNNNNNNTCC 2 cut(s) 455, 487
Alw21I GWGCWC 1 cut(s) 702
Alw26I GTCTC 2 cut(s) 299, 1164
AlwI GGATC 5 cut(s) 664, 1030, 1043, 1105, 1118
AlwNI CAGNNNCTG 1 cut(s) 730
Aor51HI AGCGCT 1 cut(s) 822
AoxI GGCC 6 cut(s) 214, 452, 643, 853, 894, 1167
ApeKI GCWGC 4 cut(s) 368, 818, 992, 1070
ApoI RAATTY 1 cut(s) 5
AspLEI GCGC 1 cut(s) 823
AspS9I GGNCC 2 cut(s) 727, 853
AsuC2I CCSGG 1 cut(s) 391
AsuHPI GGTGA 2 cut(s) 466, 919
AvaII GGWCC 1 cut(s) 727
AxyI CCTNAGG 1 cut(s) 1106
BalI TGGCCA 2 cut(s) 645, 1169
BamHI GGATCC 2 cut(s) 1035, 1110
BanI GGYRCC 1 cut(s) 779
BanII GRGCYC 1 cut(s) 702
BbsI GAAGAC 1 cut(s) 681
Bbv12I GWGCWC 1 cut(s) 702
BbvCI CCTCAGC 1 cut(s) 443
BbvI GCAGC 4 cut(s) 380, 830, 979, 1082
BccI CCATC 3 cut(s) 179, 602, 840
BcgI CGANNNNNNTGC 4 cut(s) 477, 509, 511, 543
BciT130I CCWGG 2 cut(s) 731, 875
BclI TGATCA 1 cut(s) 354
BcnI CCSGG 1 cut(s) 391
BcoDI GTCTC 2 cut(s) 299, 1164
BfaI CTAG 6 cut(s) 248, 383, 534, 812, 1067, 1089
BfmI CTRYAG 2 cut(s) 183, 501
BfoI RGCGCY 1 cut(s) 824
BglI GCCNNNNNGGC 1 cut(s) 1175
BisI GCNGC 5 cut(s) 217, 369, 819, 993, 1071
BlsI GCNGC 5 cut(s) 218, 370, 820, 994, 1072
Bme1390I CCNGG 3 cut(s) 391, 731, 875
Bme18I GGWCC 1 cut(s) 727
BmgT120I GGNCC 2 cut(s) 727, 853
BmiI GGNNCC 3 cut(s) 781, 1037, 1112
BmrFI CCNGG 3 cut(s) 391, 731, 875
BmsI GCATC 2 cut(s) 403, 876
BpiI GAAGAC 1 cut(s) 681
BpmI CTGGAG 1 cut(s) 752
Bpu10I CCTNAGC 1 cut(s) 443
BpuEI CTTGAG 1 cut(s) 221
BpuMI CCSGG 1 cut(s) 391
BsaAI YACGTR 1 cut(s) 70
BsaBI GATNNNNATC 2 cut(s) 515, 1040
BsaJI CCNNGG 4 cut(s) 211, 455, 652, 856
Bsc4I CCNNNNNNNGG 7 cut(s) 175, 223, 304, 305, 476, 658, 1120
Bse118I RCCGGY 2 cut(s) 371, 476
Bse1I ACTGG 2 cut(s) 276, 572
Bse21I CCTNAGG 1 cut(s) 1106
Bse3DI GCAATG 3 cut(s) 483, 495, 897
Bse8I GATNNNNATC 2 cut(s) 515, 1040
BseBI CCWGG 2 cut(s) 731, 875
BseDI CCNNGG 4 cut(s) 211, 455, 652, 856
BseGI GGATG 3 cut(s) 396, 418, 1157
BseJI GATNNNNATC 2 cut(s) 515, 1040
BseLI CCNNNNNNNGG 7 cut(s) 175, 223, 304, 305, 476, 658, 1120
BseMI GCAATG 3 cut(s) 483, 495, 897
BseMII CTCAG 2 cut(s) 457, 800
BseNI ACTGG 2 cut(s) 276, 572
BseXI GCAGC 4 cut(s) 380, 830, 979, 1082
BseYI CCCAGC 1 cut(s) 1031
Bsh1236I CGCG 2 cut(s) 219, 665
BshFI GGCC 6 cut(s) 216, 454, 645, 855, 896, 1169
BshNI GGYRCC 1 cut(s) 779
BsiHKAI GWGCWC 1 cut(s) 702
BsiSI CCGG 4 cut(s) 372, 390, 410, 477
BslFI GGGAC 3 cut(s) 152, 520, 777
BslI CCNNNNNNNGG 7 cut(s) 175, 223, 304, 305, 476, 658, 1120
BsmAI GTCTC 2 cut(s) 299, 1164
BsmFI GGGAC 3 cut(s) 152, 520, 777
BsmI GAATGC 2 cut(s) 1013, 1098
BsnI GGCC 6 cut(s) 216, 454, 645, 855, 896, 1169
Bsp1286I GDGCHC 1 cut(s) 702
Bsp143I GATC 6 cut(s) 354, 516, 548, 656, 1035, 1110
Bsp19I CCATGG 2 cut(s) 455, 652
BspACI CCGC 3 cut(s) 196, 217, 861
BspANI GGCC 6 cut(s) 216, 454, 645, 855, 896, 1169
BspCNI CTCAG 2 cut(s) 456, 799
BspFNI CGCG 2 cut(s) 219, 665
BspHI TCATGA 1 cut(s) 351
BspLI GGNNCC 3 cut(s) 781, 1037, 1112
BspMAI CTGCAG 1 cut(s) 187
BspPI GGATC 5 cut(s) 664, 1030, 1043, 1105, 1118
BspT107I GGYRCC 1 cut(s) 779
BsrDI GCAATG 3 cut(s) 483, 495, 897
BsrFI RCCGGY 2 cut(s) 371, 476
BsrI ACTGG 2 cut(s) 276, 572
BssAI RCCGGY 2 cut(s) 371, 476
BssECI CCNNGG 4 cut(s) 211, 455, 652, 856
BssMI GATC 6 cut(s) 354, 516, 548, 656, 1035, 1110
BssT1I CCWWGG 4 cut(s) 211, 455, 652, 856
Bst2UI CCWGG 2 cut(s) 731, 875
Bst6I CTCTTC 1 cut(s) 150
BstBAI YACGTR 1 cut(s) 70
BstC8I GCNNGC 1 cut(s) 602
BstDEI CTNAG 3 cut(s) 443, 786, 1106
BstDSI CCRYGG 2 cut(s) 455, 652
BstF5I GGATG 3 cut(s) 396, 418, 1157
BstFNI CGCG 2 cut(s) 219, 665
BstH2I RGCGCY 1 cut(s) 824
BstHHI GCGC 1 cut(s) 823
BstKTI GATC 6 cut(s) 357, 519, 551, 659, 1038, 1113
BstMAI GTCTC 2 cut(s) 299, 1164
BstMBI GATC 6 cut(s) 354, 516, 548, 656, 1035, 1110
BstMWI GCNNNNNNNGC 4 cut(s) 368, 432, 706, 1175
BstNI CCWGG 2 cut(s) 731, 875
BstSCI CCNGG 3 cut(s) 389, 729, 873
BstSFI CTRYAG 2 cut(s) 183, 501
BstSNI TACGTA 1 cut(s) 70
BstUI CGCG 2 cut(s) 219, 665
BstV1I GCAGC 4 cut(s) 380, 830, 979, 1082
BstV2I GAAGAC 1 cut(s) 681
BstX2I RGATCY 2 cut(s) 1035, 1110
BstXI CCANNNNNNTGG 1 cut(s) 653
BstYI RGATCY 2 cut(s) 1035, 1110
Bsu36I CCTNAGG 1 cut(s) 1106
BsuRI GGCC 6 cut(s) 216, 454, 645, 855, 896, 1169
BtgI CCRYGG 2 cut(s) 455, 652
BtsCI GGATG 3 cut(s) 396, 418, 1157
BtsI GCAGTG 3 cut(s) 205, 566, 994
BtsIMutI CAGTG 5 cut(s) 205, 283, 566, 579, 994
Cac8I GCNNGC 1 cut(s) 602
CaiI CAGNNNCTG 1 cut(s) 730
CciI TCATGA 1 cut(s) 351
CfoI GCGC 1 cut(s) 823
Cfr10I RCCGGY 2 cut(s) 371, 476
Cfr13I GGNCC 2 cut(s) 727, 853
CseI GACGC 2 cut(s) 317, 671
Csp6I GTAC 2 cut(s) 192, 911
CspCI CAANNNNNGTGG 2 cut(s) 919, 954
CviQI GTAC 2 cut(s) 192, 911
DdeI CTNAG 3 cut(s) 443, 786, 1106
DpnI GATC 6 cut(s) 356, 518, 550, 658, 1037, 1112
DpnII GATC 6 cut(s) 354, 516, 548, 656, 1035, 1110
DrdI GACNNNNNNGTC 1 cut(s) 668
DseDI GACNNNNNNGTC 1 cut(s) 668
EaeI YGGCCR 2 cut(s) 643, 1167
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
Ecl136II GAGCTC 1 cut(s) 700
Eco105I TACGTA 1 cut(s) 70
Eco130I CCWWGG 4 cut(s) 211, 455, 652, 856
Eco24I GRGCYC 1 cut(s) 702
Eco47I GGWCC 1 cut(s) 727
Eco47III AGCGCT 1 cut(s) 822
Eco53kI GAGCTC 1 cut(s) 700
Eco57I CTGAAG 1 cut(s) 1011
Eco81I CCTNAGG 1 cut(s) 1106
EcoICRI GAGCTC 1 cut(s) 700
EcoO109I RGGNCCY 1 cut(s) 727
EcoRI GAATTC 1 cut(s) 5
EcoRII CCWGG 2 cut(s) 729, 873
EcoT14I CCWWGG 4 cut(s) 211, 455, 652, 856
EcoT22I ATGCAT 1 cut(s) 418
EcoT38I GRGCYC 1 cut(s) 702
ErhI CCWWGG 4 cut(s) 211, 455, 652, 856
FaqI GGGAC 3 cut(s) 152, 520, 777
FauI CCCGC 1 cut(s) 203
FbaI TGATCA 1 cut(s) 354
Fnu4HI GCNGC 5 cut(s) 217, 369, 819, 993, 1071
FokI GGATG 3 cut(s) 383, 425, 1164
FriOI GRGCYC 1 cut(s) 702
Fsp4HI GCNGC 5 cut(s) 217, 369, 819, 993, 1071
FspBI CTAG 6 cut(s) 248, 383, 534, 812, 1067, 1089
GlaI GCGC 1 cut(s) 822
GluI GCNGC 5 cut(s) 217, 369, 819, 993, 1071
GsaI CCCAGC 1 cut(s) 1035
GsuI CTGGAG 1 cut(s) 752
HaeII RGCGCY 1 cut(s) 824
HaeIII GGCC 6 cut(s) 216, 454, 645, 855, 896, 1169
HapII CCGG 4 cut(s) 372, 390, 410, 477
HgaI GACGC 2 cut(s) 317, 671
HhaI GCGC 1 cut(s) 823
Hin6I GCGC 1 cut(s) 821
HinP1I GCGC 1 cut(s) 821
HincII GTYRAC 1 cut(s) 1060
HindII GTYRAC 1 cut(s) 1060
HindIII AAGCTT 2 cut(s) 125, 424
HinfI GANTC 4 cut(s) 206, 680, 790, 1084
HpaII CCGG 4 cut(s) 372, 390, 410, 477
HphI GGTGA 2 cut(s) 466, 919
Hpy166II GTNNAC 2 cut(s) 474, 1060
Hpy188I TCNGA 3 cut(s) 661, 789, 999
Hpy188III TCNNGA 3 cut(s) 332, 352, 1149
Hpy8I GTNNAC 2 cut(s) 474, 1060
Hpy99I CGWCG 1 cut(s) 714
HpyAV CCTTC 5 cut(s) 111, 839, 886, 1001, 1073
HpyCH4IV ACGT 1 cut(s) 69
HpyF10VI GCNNNNNNNGC 4 cut(s) 368, 432, 706, 1175
HpyF3I CTNAG 3 cut(s) 443, 786, 1106
HpySE526I ACGT 1 cut(s) 69
HspAI GCGC 1 cut(s) 821
Ksp22I TGATCA 1 cut(s) 354
Kzo9I GATC 6 cut(s) 354, 516, 548, 656, 1035, 1110
LmnI GCTCC 2 cut(s) 733, 1010
Lsp1109I GCAGC 4 cut(s) 380, 830, 979, 1082
LweI GCATC 2 cut(s) 403, 876
MaeI CTAG 6 cut(s) 248, 383, 534, 812, 1067, 1089
MaeII ACGT 1 cut(s) 69
MaeIII GTNAC 1 cut(s) 1100
MalI GATC 6 cut(s) 356, 518, 550, 658, 1037, 1112
MboI GATC 6 cut(s) 354, 516, 548, 656, 1035, 1110
MboII GAAGA 8 cut(s) 129, 137, 140, 143, 340, 558, 681, 910
MfeI CAATTG 1 cut(s) 936
MflI RGATCY 2 cut(s) 1035, 1110
MhlI GDGCHC 1 cut(s) 702
MlsI TGGCCA 2 cut(s) 645, 1169
MluCI AATT 4 cut(s) 5, 10, 836, 936
MluNI TGGCCA 2 cut(s) 645, 1169
MlyI GAGTC 1 cut(s) 799
MmeI TCCRAC 1 cut(s) 931
MnlI CCTC 8 cut(s) 67, 223, 278, 452, 670, 793, 819, 935
Mox20I TGGCCA 2 cut(s) 645, 1169
Mph1103I ATGCAT 1 cut(s) 418
MscI TGGCCA 2 cut(s) 645, 1169
MseI TTAA 1 cut(s) 428
MslI CAYNNNNRTG 4 cut(s) 488, 618, 630, 651
Msp20I TGGCCA 2 cut(s) 645, 1169
MspA1I CMGCKG 2 cut(s) 1031, 1073
MspI CCGG 4 cut(s) 372, 390, 410, 477
MspR9I CCNGG 3 cut(s) 391, 731, 875
MunI CAATTG 1 cut(s) 936
Mva1269I GAATGC 2 cut(s) 1013, 1098
MvaI CCWGG 2 cut(s) 731, 875
MvnI CGCG 2 cut(s) 219, 665
MwoI GCNNNNNNNGC 4 cut(s) 368, 432, 706, 1175
NciI CCSGG 1 cut(s) 391
NcoI CCATGG 2 cut(s) 455, 652
NdeII GATC 6 cut(s) 354, 516, 548, 656, 1035, 1110
NlaIV GGNNCC 3 cut(s) 781, 1037, 1112
NsiI ATGCAT 1 cut(s) 418
PagI TCATGA 1 cut(s) 351
PctI GAATGC 2 cut(s) 1013, 1098
PfeI GAWTC 3 cut(s) 206, 680, 1084
PfoI TCCNGGA 1 cut(s) 729
PkrI GCNGC 5 cut(s) 218, 370, 820, 994, 1072
PleI GAGTC 1 cut(s) 798
PpsI GAGTC 1 cut(s) 798
Ppu21I YACGTR 1 cut(s) 70
PpuMI RGGWCCY 1 cut(s) 727
Psp124BI GAGCTC 1 cut(s) 702
Psp5II RGGWCCY 1 cut(s) 727
Psp6I CCWGG 2 cut(s) 729, 873
PspFI CCCAGC 1 cut(s) 1031
PspGI CCWGG 2 cut(s) 729, 873
PspN4I GGNNCC 3 cut(s) 781, 1037, 1112
PspPI GGNCC 2 cut(s) 727, 853
PspPPI RGGWCCY 1 cut(s) 727
PstI CTGCAG 1 cut(s) 187
PstNI CAGNNNCTG 1 cut(s) 730
PsuI RGATCY 2 cut(s) 1035, 1110
PvuII CAGCTG 2 cut(s) 1031, 1073
RsaI GTAC 2 cut(s) 193, 912
RsaNI GTAC 2 cut(s) 192, 911
RseI CAYNNNNRTG 4 cut(s) 488, 618, 630, 651
SacI GAGCTC 1 cut(s) 702
SaqAI TTAA 1 cut(s) 428
SatI GCNGC 5 cut(s) 217, 369, 819, 993, 1071
Sau3AI GATC 6 cut(s) 354, 516, 548, 656, 1035, 1110
Sau96I GGNCC 2 cut(s) 727, 853
SchI GAGTC 1 cut(s) 799
ScrFI CCNGG 3 cut(s) 391, 731, 875
SduI GDGCHC 1 cut(s) 702
SfaNI GCATC 2 cut(s) 403, 876
SfcI CTRYAG 2 cut(s) 183, 501
SinI GGWCC 1 cut(s) 727
SmiMI CAYNNNNRTG 4 cut(s) 488, 618, 630, 651
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
SnaBI TACGTA 1 cut(s) 70
Sse9I AATT 4 cut(s) 5, 10, 836, 936
SsiI CCGC 3 cut(s) 196, 217, 861
SspMI CTAG 6 cut(s) 248, 383, 534, 812, 1067, 1089
SstI GAGCTC 1 cut(s) 702
StyD4I CCNGG 3 cut(s) 389, 729, 873
StyI CCWWGG 4 cut(s) 211, 455, 652, 856
TaiI ACGT 1 cut(s) 72
TaqI TCGA 3 cut(s) 519, 696, 890
TasI AATT 4 cut(s) 5, 10, 836, 936
TauI GCSGC 1 cut(s) 219
TfiI GAWTC 3 cut(s) 206, 680, 1084
Tru1I TTAA 1 cut(s) 428
Tru9I TTAA 1 cut(s) 428
TscAI CASTG 5 cut(s) 205, 283, 573, 579, 994
TseI GCWGC 4 cut(s) 368, 818, 992, 1070
TspRI CASTG 5 cut(s) 205, 283, 573, 579, 994
VpaK11BI GGWCC 1 cut(s) 727
XapI RAATTY 1 cut(s) 5
XcmI CCANNNNNNNNNTGG 2 cut(s) 593, 904
XspI CTAG 6 cut(s) 248, 383, 534, 812, 1067, 1089
Zsp2I ATGCAT 1 cut(s) 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.