Rh5BG153000

Zinc transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0002306
Physical Location & Seq
Forward (+)
15666057 .. 15668407
2351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG153000.1

Sequence Viewer

Length: 888 bp
ATGAGAAAGCTTACTCTATCTTCCACTCTTCTTCTTCTTTTGCTGTTCGTCCCCATCTTGGTTTCTGCAGAATGTACTTGCAGTGATGAATACCAAGGCCGCGACAAGGGGGAGGCTCTCAAGTTCAAGCTAGTTGCAATAAGTTCAATCCTCATAGCCAGTGCTATTGGTGTCTCTCTCCCAATGTTGGGCAAGAAAATCCCAACTTTGCGTCCTGAAAATGATATTTTCTTCATGATCAAAGCCTTTGCAGCCGGTGTGATACTAGCCACCGGGTTCATCCATGTCTTGCCGGATGCATTTGAAAGCTTAACAAGCCCCTGCCTCAGCCAAAGGCCATGGGGGGATTTCCCGTTCACCGGCTTCATTGCAATGCTTTCGGCTATAGGGACGATGATGATCGACACCTTTGCTACTAGCTATTATAGAAGATCACATTTCAAAAAAGCACTGCCAGTGAAAGATGACCAAGAAATGAATGGCGTGCATGATGGTCATGTTCATGTTCATACTCATGCCACACATGGTCACACCCATGGATCGGACGCGATAGTCTTGGAGGATTCATCGTCTTCTTTCGAGCTCGTCAGGCGACGAATAATATCACAGGTCCTGGAGCTTGGGATTGTGGTTCATTCTGTAATCATTGGAGTATCTTTAGGTGCCTCTCAGAGTACCAAGACAATCAAGCCTCTAGTTGCAGCGCTGACATTCCATCAATTTTTTGAAGGCATGGGCCTTGGCGGTTGCATCTGCCAGGTATTTTCAATCTCCTCCGAAGATGATTTATCCAATAATTATCCTATCATTTTAAACATATCATCATCCTTCATATGTGATATGCAAGATTATGATGCAAGAAATCTTTTCTATGCTTACCAACCGTAA

Protein Analysis

295

Amino Acids

32.35

Weight (kDa)

6.16

Isoelectric Point (pI)

40.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zip PF02535 41 - 253 2.4e-52 ZIP Zinc transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 551
AccB1I GGYRCC 1 cut(s) 662
AccII CGCG 2 cut(s) 102, 548
AciI CCGC 2 cut(s) 100, 744
AclWI GGATC 1 cut(s) 547
AfaI GTAC 2 cut(s) 76, 676
AfeI AGCGCT 1 cut(s) 705
AfiI CCNNNNNNNGG 6 cut(s) 58, 106, 187, 188, 359, 541
AgsI TTSAA 6 cut(s) 127, 147, 305, 442, 728, 768
AjnI CCWGG 2 cut(s) 612, 756
AloI GAACNNNNNNTCC 2 cut(s) 338, 370
AluBI AGCT 6 cut(s) 10, 130, 309, 420, 583, 619
AluI AGCT 6 cut(s) 10, 130, 309, 420, 583, 619
Alw21I GWGCWC 1 cut(s) 585
Alw26I GTCTC 1 cut(s) 178
AlwI GGATC 1 cut(s) 547
AlwNI CAGNNNCTG 1 cut(s) 613
Aor51HI AGCGCT 1 cut(s) 705
AoxI GGCC 3 cut(s) 97, 335, 736
ApeKI GCWGC 2 cut(s) 251, 701
AspLEI GCGC 1 cut(s) 706
AspS9I GGNCC 2 cut(s) 610, 736
AsuC2I CCSGG 1 cut(s) 274
AsuHPI GGTGA 1 cut(s) 349
AvaII GGWCC 1 cut(s) 610
BanI GGYRCC 1 cut(s) 662
BanII GRGCYC 1 cut(s) 585
BbsI GAAGAC 1 cut(s) 564
Bbv12I GWGCWC 1 cut(s) 585
BbvCI CCTCAGC 1 cut(s) 326
BbvI GCAGC 2 cut(s) 263, 713
BccI CCATC 3 cut(s) 62, 485, 723
BcgI CGANNNNNNTGC 4 cut(s) 360, 392, 394, 426
BciT130I CCWGG 2 cut(s) 614, 758
BclI TGATCA 1 cut(s) 237
BcnI CCSGG 1 cut(s) 274
BcoDI GTCTC 1 cut(s) 178
BfaI CTAG 4 cut(s) 131, 266, 417, 695
BfmI CTRYAG 2 cut(s) 66, 384
BfoI RGCGCY 1 cut(s) 707
BisI GCNGC 3 cut(s) 100, 252, 702
BlsI GCNGC 3 cut(s) 101, 253, 703
Bme1390I CCNGG 3 cut(s) 274, 614, 758
Bme18I GGWCC 1 cut(s) 610
BmgT120I GGNCC 2 cut(s) 610, 736
BmiI GGNNCC 1 cut(s) 664
BmrFI CCNGG 3 cut(s) 274, 614, 758
BmsI GCATC 3 cut(s) 286, 759, 844
BpiI GAAGAC 1 cut(s) 564
BpmI CTGGAG 1 cut(s) 635
Bpu10I CCTNAGC 1 cut(s) 326
BpuEI CTTGAG 1 cut(s) 104
BpuMI CCSGG 1 cut(s) 274
BsaBI GATNNNNATC 1 cut(s) 398
BsaJI CCNNGG 4 cut(s) 94, 338, 535, 739
Bsc4I CCNNNNNNNGG 6 cut(s) 58, 106, 187, 188, 359, 541
Bse118I RCCGGY 2 cut(s) 254, 359
Bse1I ACTGG 2 cut(s) 159, 455
Bse3DI GCAATG 2 cut(s) 366, 378
Bse8I GATNNNNATC 1 cut(s) 398
BseBI CCWGG 2 cut(s) 614, 758
BseDI CCNNGG 4 cut(s) 94, 338, 535, 739
BseGI GGATG 3 cut(s) 279, 301, 824
BseJI GATNNNNATC 1 cut(s) 398
BseLI CCNNNNNNNGG 6 cut(s) 58, 106, 187, 188, 359, 541
BseMI GCAATG 2 cut(s) 366, 378
BseMII CTCAG 2 cut(s) 340, 683
BseNI ACTGG 2 cut(s) 159, 455
BseRI GAGGAG 1 cut(s) 763
BseXI GCAGC 2 cut(s) 263, 713
Bsh1236I CGCG 2 cut(s) 102, 548
BshFI GGCC 3 cut(s) 99, 337, 738
BshNI GGYRCC 1 cut(s) 662
BsiHKAI GWGCWC 1 cut(s) 585
BsiSI CCGG 4 cut(s) 255, 273, 293, 360
BslFI GGGAC 2 cut(s) 35, 403
BslI CCNNNNNNNGG 6 cut(s) 58, 106, 187, 188, 359, 541
BsmAI GTCTC 1 cut(s) 178
BsmFI GGGAC 2 cut(s) 35, 403
BsnI GGCC 3 cut(s) 99, 337, 738
Bsp1286I GDGCHC 1 cut(s) 585
Bsp143I GATC 4 cut(s) 237, 399, 431, 539
Bsp19I CCATGG 2 cut(s) 338, 535
BspACI CCGC 2 cut(s) 100, 744
BspANI GGCC 3 cut(s) 99, 337, 738
BspCNI CTCAG 2 cut(s) 339, 682
BspFNI CGCG 2 cut(s) 102, 548
BspHI TCATGA 1 cut(s) 234
BspLI GGNNCC 1 cut(s) 664
BspMAI CTGCAG 1 cut(s) 70
BspPI GGATC 1 cut(s) 547
BspT107I GGYRCC 1 cut(s) 662
BsrDI GCAATG 2 cut(s) 366, 378
BsrFI RCCGGY 2 cut(s) 254, 359
BsrI ACTGG 2 cut(s) 159, 455
BssAI RCCGGY 2 cut(s) 254, 359
BssECI CCNNGG 4 cut(s) 94, 338, 535, 739
BssMI GATC 4 cut(s) 237, 399, 431, 539
BssT1I CCWWGG 4 cut(s) 94, 338, 535, 739
Bst2UI CCWGG 2 cut(s) 614, 758
Bst4CI ACNGT 1 cut(s) 885
Bst6I CTCTTC 1 cut(s) 33
BstC8I GCNNGC 1 cut(s) 485
BstDEI CTNAG 2 cut(s) 326, 669
BstDSI CCRYGG 2 cut(s) 338, 535
BstF5I GGATG 3 cut(s) 279, 301, 824
BstFNI CGCG 2 cut(s) 102, 548
BstH2I RGCGCY 1 cut(s) 707
BstHHI GCGC 1 cut(s) 706
BstKTI GATC 4 cut(s) 240, 402, 434, 542
BstMAI GTCTC 1 cut(s) 178
BstMBI GATC 4 cut(s) 237, 399, 431, 539
BstMWI GCNNNNNNNGC 3 cut(s) 251, 315, 589
BstNI CCWGG 2 cut(s) 614, 758
BstSCI CCNGG 3 cut(s) 272, 612, 756
BstSFI CTRYAG 2 cut(s) 66, 384
BstUI CGCG 2 cut(s) 102, 548
BstV1I GCAGC 2 cut(s) 263, 713
BstV2I GAAGAC 1 cut(s) 564
BsuRI GGCC 3 cut(s) 99, 337, 738
BtgI CCRYGG 2 cut(s) 338, 535
BtsCI GGATG 3 cut(s) 279, 301, 824
BtsI GCAGTG 2 cut(s) 88, 449
BtsIMutI CAGTG 4 cut(s) 88, 166, 449, 462
Cac8I GCNNGC 1 cut(s) 485
CaiI CAGNNNCTG 1 cut(s) 613
CciI TCATGA 1 cut(s) 234
CfoI GCGC 1 cut(s) 706
Cfr10I RCCGGY 2 cut(s) 254, 359
Cfr13I GGNCC 2 cut(s) 610, 736
CseI GACGC 2 cut(s) 200, 554
Csp6I GTAC 2 cut(s) 75, 675
CviQI GTAC 2 cut(s) 75, 675
DdeI CTNAG 2 cut(s) 326, 669
DpnI GATC 4 cut(s) 239, 401, 433, 541
DpnII GATC 4 cut(s) 237, 399, 431, 539
DraI TTTAAA 1 cut(s) 813
DrdI GACNNNNNNGTC 1 cut(s) 551
DseDI GACNNNNNNGTC 1 cut(s) 551
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
Ecl136II GAGCTC 1 cut(s) 583
Eco130I CCWWGG 4 cut(s) 94, 338, 535, 739
Eco24I GRGCYC 1 cut(s) 585
Eco47I GGWCC 1 cut(s) 610
Eco47III AGCGCT 1 cut(s) 705
Eco53kI GAGCTC 1 cut(s) 583
EcoICRI GAGCTC 1 cut(s) 583
EcoO109I RGGNCCY 1 cut(s) 610
EcoRII CCWGG 2 cut(s) 612, 756
EcoT14I CCWWGG 4 cut(s) 94, 338, 535, 739
EcoT22I ATGCAT 1 cut(s) 301
EcoT38I GRGCYC 1 cut(s) 585
ErhI CCWWGG 4 cut(s) 94, 338, 535, 739
FaqI GGGAC 2 cut(s) 35, 403
FauNDI CATATG 1 cut(s) 833
FbaI TGATCA 1 cut(s) 237
Fnu4HI GCNGC 3 cut(s) 100, 252, 702
FokI GGATG 3 cut(s) 266, 308, 811
FriOI GRGCYC 1 cut(s) 585
Fsp4HI GCNGC 3 cut(s) 100, 252, 702
FspBI CTAG 4 cut(s) 131, 266, 417, 695
GlaI GCGC 1 cut(s) 705
GluI GCNGC 3 cut(s) 100, 252, 702
GsuI CTGGAG 1 cut(s) 635
HaeII RGCGCY 1 cut(s) 707
HaeIII GGCC 3 cut(s) 99, 337, 738
HapII CCGG 4 cut(s) 255, 273, 293, 360
HgaI GACGC 2 cut(s) 200, 554
HhaI GCGC 1 cut(s) 706
Hin6I GCGC 1 cut(s) 704
HinP1I GCGC 1 cut(s) 704
HindIII AAGCTT 2 cut(s) 8, 307
HinfI GANTC 1 cut(s) 563
HpaII CCGG 4 cut(s) 255, 273, 293, 360
HphI GGTGA 1 cut(s) 349
Hpy166II GTNNAC 1 cut(s) 357
Hpy188I TCNGA 3 cut(s) 544, 672, 778
Hpy188III TCNNGA 2 cut(s) 215, 235
Hpy8I GTNNAC 1 cut(s) 357
Hpy99I CGWCG 1 cut(s) 597
HpyAV CCTTC 2 cut(s) 722, 838
HpyCH4III ACNGT 1 cut(s) 885
HpyF10VI GCNNNNNNNGC 3 cut(s) 251, 315, 589
HpyF3I CTNAG 2 cut(s) 326, 669
HspAI GCGC 1 cut(s) 704
Ksp22I TGATCA 1 cut(s) 237
Kzo9I GATC 4 cut(s) 237, 399, 431, 539
LmnI GCTCC 1 cut(s) 616
Lsp1109I GCAGC 2 cut(s) 263, 713
LweI GCATC 3 cut(s) 286, 759, 844
MaeI CTAG 4 cut(s) 131, 266, 417, 695
MaeIII GTNAC 1 cut(s) 527
MalI GATC 4 cut(s) 239, 401, 433, 541
MboI GATC 4 cut(s) 237, 399, 431, 539
MboII GAAGA 8 cut(s) 12, 20, 23, 26, 223, 441, 564, 791
MhlI GDGCHC 1 cut(s) 585
MluCI AATT 2 cut(s) 719, 796
MnlI CCTC 7 cut(s) 106, 161, 335, 553, 676, 702, 784
Mph1103I ATGCAT 1 cut(s) 301
MseI TTAA 2 cut(s) 311, 812
MslI CAYNNNNRTG 4 cut(s) 371, 501, 513, 534
MspI CCGG 4 cut(s) 255, 273, 293, 360
MspR9I CCNGG 3 cut(s) 274, 614, 758
MvaI CCWGG 2 cut(s) 614, 758
MvnI CGCG 2 cut(s) 102, 548
MwoI GCNNNNNNNGC 3 cut(s) 251, 315, 589
NciI CCSGG 1 cut(s) 274
NcoI CCATGG 2 cut(s) 338, 535
NdeI CATATG 1 cut(s) 833
NdeII GATC 4 cut(s) 237, 399, 431, 539
NlaIV GGNNCC 1 cut(s) 664
NmuCI GTSAC 1 cut(s) 527
NsiI ATGCAT 1 cut(s) 301
PagI TCATGA 1 cut(s) 234
PfeI GAWTC 1 cut(s) 563
PfoI TCCNGGA 1 cut(s) 612
PkrI GCNGC 3 cut(s) 101, 253, 703
PpuMI RGGWCCY 1 cut(s) 610
Psp124BI GAGCTC 1 cut(s) 585
Psp5II RGGWCCY 1 cut(s) 610
Psp6I CCWGG 2 cut(s) 612, 756
PspGI CCWGG 2 cut(s) 612, 756
PspN4I GGNNCC 1 cut(s) 664
PspPI GGNCC 2 cut(s) 610, 736
PspPPI RGGWCCY 1 cut(s) 610
PstI CTGCAG 1 cut(s) 70
PstNI CAGNNNCTG 1 cut(s) 613
RsaI GTAC 2 cut(s) 76, 676
RsaNI GTAC 2 cut(s) 75, 675
RseI CAYNNNNRTG 4 cut(s) 371, 501, 513, 534
SacI GAGCTC 1 cut(s) 585
SaqAI TTAA 2 cut(s) 311, 812
SatI GCNGC 3 cut(s) 100, 252, 702
Sau3AI GATC 4 cut(s) 237, 399, 431, 539
Sau96I GGNCC 2 cut(s) 610, 736
ScrFI CCNGG 3 cut(s) 274, 614, 758
SduI GDGCHC 1 cut(s) 585
SfaNI GCATC 3 cut(s) 286, 759, 844
SfcI CTRYAG 2 cut(s) 66, 384
SinI GGWCC 1 cut(s) 610
SmiMI CAYNNNNRTG 4 cut(s) 371, 501, 513, 534
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
Sse9I AATT 2 cut(s) 719, 796
SsiI CCGC 2 cut(s) 100, 744
SspMI CTAG 4 cut(s) 131, 266, 417, 695
SstI GAGCTC 1 cut(s) 585
StyD4I CCNGG 3 cut(s) 272, 612, 756
StyI CCWWGG 4 cut(s) 94, 338, 535, 739
TaaI ACNGT 1 cut(s) 885
TaqI TCGA 2 cut(s) 402, 579
TasI AATT 2 cut(s) 719, 796
TatI WGTACW 1 cut(s) 74
TauI GCSGC 1 cut(s) 102
TfiI GAWTC 1 cut(s) 563
Tru1I TTAA 2 cut(s) 311, 812
Tru9I TTAA 2 cut(s) 311, 812
TscAI CASTG 4 cut(s) 88, 166, 456, 462
TseFI GTSAC 1 cut(s) 527
TseI GCWGC 2 cut(s) 251, 701
Tsp45I GTSAC 1 cut(s) 527
TspRI CASTG 4 cut(s) 88, 166, 456, 462
VpaK11BI GGWCC 1 cut(s) 610
XcmI CCANNNNNNNNNTGG 1 cut(s) 476
XspI CTAG 4 cut(s) 131, 266, 417, 695
Zsp2I ATGCAT 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.