Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002306

Physical Location & Seq

Genomic Coordinates Reverse (-)

18549412 .. 18551206

Gene Structure 1795 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032742

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGTTTATTCTTCAAGCTTCATCTTTGAACATGTTGAAGATAGTGGCATTAATTCTAATTCTTCTATTCCCCACTATAGTATTTGGTCACACAAATCACAGGACCGGCCATGCTTGTGAATCTGAAGACACACACGAACACAACGATGAAGATCATGAAGCACTAAAGTACAAGCTAGGCTCCATTGCTTCAATTCTTGTTTTTGGTGCTTTGGGGGTGAGTCTGCCACTGCTAGGCAAGAAGATACCCACGCTAAGACCGGAGAACGATATCTTCTTCATTGTCAAGGCCTTTGCGGCCGGGGTGATTCTAGCGACTGCCTTCATTCACATACTACCTGAGGCCTTTGCGACCTTGACTTCACCCTGCCTAGAAGAAAATCCATGGGGCAGATTCCCTTTCACAGGCTTTCTTTGCATGATGTCTGCCATCGGAACATTGATGGTTGATGCAATGGCAACTGTGTACTACAAAAGGTCATGCTTGAAGTCATCCCAGGTGAGAATGGATGAAGAGAGTAGAGCTGGTCATGGTGCCACACAGGGTAGTAATGCTCATGACTCTGAAGAATTGAGATCATCATCAGAATTATTCAAGCACAGGGTCATTGCACAAGTGTTGGAGCTAGGAATTCTAGTCCATTCAGTTATAATTGGAATATCAGTGGGTGCATCCCAGGACACAGATACGATAAAGCCTCTCCTGGTGGCTTTGTCTTTCCACCAGTTCTTTGAGGGCATTAGTCTTGGTGGCTGCATCTCTCAGGCGCAGTTCAAGTCTCTGTCTGAAGCCATAATGGCAGCATTTTTCTCCCTTACAACCCCCATTGGAATTGCAATTGGTATCGGAATATCAAATGTTTACAGTGAGGCTAGCCCAACTGCTCTAATTGTTCAAGGGACTTTGAATTCAGCTGCAGCTGGAATTTTAATTTACATGGCTCTTGTTGACCTACTTGCAGCAGATTTCATGAGCCCTAGAATGCAAGGAAATATGAGGATTCAATTGGGGTCATATATTTCGCTACTTCTAGGGACTGGCTGTATGTCTCTATTGGCAAAATGGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0071944 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

357

Amino Acids

38.29

Weight (kDa)

5.93

Isoelectric Point (pI)

39.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	56 - 353	8e-81	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12750
fragaria_vesca	FvH4_3g12900 FvH4_3g14490 FvH4_3g14490
malus_domestica	MD05G1236500.v1.1 MD05G1236600.v1.1 MD05G1247200.v1.1 MD10G1227800.v1.1
prunus_persica	Prupe.4G117200_v2.0.a1 Prupe.4G129600_v2.0.a1 Prupe.4G129700_v2.0.a1
pyrus_communis	pycom05g21350 pycom05g22310 pycom10g19130
rosa_chinensis	RchiOBHm_Chr5g0021001 RchiOBHm_Chr5g0023861 RchiOBHm_Chr5g0023871
rosa_laevigata	RLG00000032576 RLG00000032741 RLG00000032742
rosa_multiflora	Rmu_sc0001372.1_g000002 Rmu_sc0001372.1_g000005 Rmu_ssc0000027.1_g000003 Rmu_ssc0000244.1_g000011
rosa_roxburghii	Rroxscaffold_1G00055380 Rroxscaffold_1G00057480
rosa_rugosa	Rorug05G0063700 Rorug05G0079800 Rorug05G0079900
rosa_samantha	Rh5AG153300 Rh5AG169900 Rh5AG170000 Rh5BG153000 Rh5BG167200 Rh5BG167300 Rh5CG165600 Rh5CG182800 Rh5DG152400 Rh5DG169300
rosa_wichuraiana	Rw5G013620 Rw5G015360 Rw5G015370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	650
AccB1I	GGYRCC	1 cut(s)	533
AciI	CCGC	1 cut(s)	296
AcoI	YGGCCR	2 cut(s)	106, 297
AcsI	RAATTY	3 cut(s)	630, 907, 924
AcuI	CTGAAG	3 cut(s)	144, 585, 807
AfaI	GTAC	2 cut(s)	170, 467
AfiI	CCNNNNNNNGG	2 cut(s)	233, 404
AflIII	ACRYGT	1 cut(s)	30
AjnI	CCWGG	3 cut(s)	495, 675, 702
AluBI	AGCT	6 cut(s)	17, 175, 524, 625, 914, 920
AluI	AGCT	6 cut(s)	17, 175, 524, 625, 914, 920
Alw26I	GTCTC	2 cut(s)	783, 1053
AoxI	GGCC	4 cut(s)	106, 288, 297, 342
ApeKI	GCWGC	5 cut(s)	753, 800, 914, 917, 959
ApoI	RAATTY	3 cut(s)	630, 907, 924
AseI	ATTAAT	1 cut(s)	50
AspLEI	GCGC	1 cut(s)	769
AspS9I	GGNCC	1 cut(s)	102
AsuC2I	CCSGG	1 cut(s)	301
AsuHPI	GGTGA	4 cut(s)	229, 316, 354, 511
AsuNHI	GCTAGC	1 cut(s)	872
AvaII	GGWCC	1 cut(s)	102
AxyI	CCTNAGG	1 cut(s)	339
BanI	GGYRCC	1 cut(s)	533
BanII	GRGCYC	1 cut(s)	977
BbsI	GAAGAC	1 cut(s)	132
BbvI	GCAGC	5 cut(s)	740, 812, 901, 929, 971
BccI	CCATC	2 cut(s)	436, 437
BciT130I	CCWGG	3 cut(s)	497, 677, 704
BcnI	CCSGG	1 cut(s)	301
BcoDI	GTCTC	2 cut(s)	783, 1053
BfaI	CTAG	9 cut(s)	176, 233, 311, 371, 626, 635, 873, 978, 1031
BfmI	CTRYAG	2 cut(s)	75, 915
BglI	GCCNNNNNGGC	2 cut(s)	296, 797
BisI	GCNGC	6 cut(s)	297, 754, 801, 915, 918, 960
BlsI	GCNGC	6 cut(s)	298, 755, 802, 916, 919, 961
Bme1390I	CCNGG	4 cut(s)	301, 497, 677, 704
Bme18I	GGWCC	1 cut(s)	102
BmgT120I	GGNCC	1 cut(s)	102
BmiI	GGNNCC	2 cut(s)	181, 535
BmrFI	CCNGG	4 cut(s)	301, 497, 677, 704
BmsI	GCATC	3 cut(s)	439, 680, 765
BmtI	GCTAGC	1 cut(s)	876
BpiI	GAAGAC	1 cut(s)	132
BpuMI	CCSGG	1 cut(s)	301
BsaBI	GATNNNNATC	2 cut(s)	150, 580
BsaJI	CCNNGG	4 cut(s)	300, 383, 495, 675
BsaWI	WCCGGW	1 cut(s)	259
Bsc4I	CCNNNNNNNGG	2 cut(s)	233, 404
Bse118I	RCCGGY	1 cut(s)	104
Bse1I	ACTGG	2 cut(s)	724, 1042
Bse21I	CCTNAGG	1 cut(s)	339
Bse3DI	GCAATG	3 cut(s)	183, 459, 606
Bse8I	GATNNNNATC	2 cut(s)	150, 580
BseBI	CCWGG	3 cut(s)	497, 677, 704
BseDI	CCNNGG	4 cut(s)	300, 383, 495, 675
BseGI	GGATG	3 cut(s)	491, 514, 671
BseJI	GATNNNNATC	2 cut(s)	150, 580
BseLI	CCNNNNNNNGG	2 cut(s)	233, 404
BseMI	GCAATG	3 cut(s)	183, 459, 606
BseMII	CTCAG	2 cut(s)	330, 776
BseNI	ACTGG	2 cut(s)	724, 1042
BseX3I	CGGCCG	1 cut(s)	297
BseXI	GCAGC	5 cut(s)	740, 812, 901, 929, 971
Bsh1285I	CGRYCG	1 cut(s)	300
BshFI	GGCC	4 cut(s)	108, 290, 299, 344
BshNI	GGYRCC	1 cut(s)	533
BsiEI	CGRYCG	1 cut(s)	300
BsiSI	CCGG	3 cut(s)	105, 260, 300
BslFI	GGGAC	2 cut(s)	913, 1048
BslI	CCNNNNNNNGG	2 cut(s)	233, 404
BsmAI	GTCTC	2 cut(s)	783, 1053
BsmFI	GGGAC	2 cut(s)	913, 1048
BsmI	GAATGC	1 cut(s)	987
BsnI	GGCC	4 cut(s)	108, 290, 299, 344
Bsp1286I	GDGCHC	1 cut(s)	977
Bsp143I	GATC	2 cut(s)	151, 575
Bsp19I	CCATGG	1 cut(s)	383
BspACI	CCGC	1 cut(s)	296
BspANI	GGCC	4 cut(s)	108, 290, 299, 344
BspCNI	CTCAG	2 cut(s)	331, 775
BspHI	TCATGA	3 cut(s)	154, 556, 969
BspLI	GGNNCC	2 cut(s)	181, 535
BspMAI	CTGCAG	1 cut(s)	919
BspOI	GCTAGC	1 cut(s)	876
BspT107I	GGYRCC	1 cut(s)	533
BsrDI	GCAATG	3 cut(s)	183, 459, 606
BsrFI	RCCGGY	1 cut(s)	104
BsrI	ACTGG	2 cut(s)	724, 1042
BssAI	RCCGGY	1 cut(s)	104
BssECI	CCNNGG	4 cut(s)	300, 383, 495, 675
BssMI	GATC	2 cut(s)	151, 575
BssT1I	CCWWGG	1 cut(s)	383
Bst2UI	CCWGG	3 cut(s)	497, 677, 704
Bst4CI	ACNGT	2 cut(s)	463, 866
Bst6I	CTCTTC	1 cut(s)	507
BstC8I	GCNNGC	1 cut(s)	874
BstDEI	CTNAG	3 cut(s)	254, 339, 762
BstDSI	CCRYGG	1 cut(s)	383
BstENI	CCTNNNNNAGG	1 cut(s)	402
BstF5I	GGATG	3 cut(s)	491, 514, 671
BstHHI	GCGC	1 cut(s)	769
BstKTI	GATC	2 cut(s)	154, 578
BstMAI	GTCTC	2 cut(s)	783, 1053
BstMBI	GATC	2 cut(s)	151, 575
BstMCI	CGRYCG	1 cut(s)	300
BstMWI	GCNNNNNNNGC	4 cut(s)	296, 414, 797, 1064
BstNI	CCWGG	3 cut(s)	497, 677, 704
BstNSI	RCATGY	1 cut(s)	34
BstSCI	CCNGG	4 cut(s)	299, 495, 675, 702
BstSFI	CTRYAG	2 cut(s)	75, 915
BstV1I	GCAGC	5 cut(s)	740, 812, 901, 929, 971
BstV2I	GAAGAC	1 cut(s)	132
BstZI	CGGCCG	1 cut(s)	297
Bsu36I	CCTNAGG	1 cut(s)	339
BsuRI	GGCC	4 cut(s)	108, 290, 299, 344
BtgI	CCRYGG	1 cut(s)	383
BtsCI	GGATG	3 cut(s)	491, 514, 671
BtsI	GCAGTG	1 cut(s)	227
BtsIMutI	CAGTG	3 cut(s)	227, 669, 871
Cac8I	GCNNGC	1 cut(s)	874
CciI	TCATGA	3 cut(s)	154, 556, 969
CfoI	GCGC	1 cut(s)	769
Cfr10I	RCCGGY	1 cut(s)	104
Cfr13I	GGNCC	1 cut(s)	102
Csp6I	GTAC	2 cut(s)	169, 466
CviQI	GTAC	2 cut(s)	169, 466
DdeI	CTNAG	3 cut(s)	254, 339, 762
DpnI	GATC	2 cut(s)	153, 577
DpnII	GATC	2 cut(s)	151, 575
EaeI	YGGCCR	2 cut(s)	106, 297
EagI	CGGCCG	1 cut(s)	297
Eam1104I	CTCTTC	1 cut(s)	507
EarI	CTCTTC	1 cut(s)	507
EclXI	CGGCCG	1 cut(s)	297
Eco130I	CCWWGG	1 cut(s)	383
Eco147I	AGGCCT	2 cut(s)	290, 344
Eco24I	GRGCYC	1 cut(s)	977
Eco32I	GATATC	1 cut(s)	271
Eco47I	GGWCC	1 cut(s)	102
Eco52I	CGGCCG	1 cut(s)	297
Eco57I	CTGAAG	3 cut(s)	144, 585, 807
Eco81I	CCTNAGG	1 cut(s)	339
EcoNI	CCTNNNNNAGG	1 cut(s)	402
EcoRI	GAATTC	2 cut(s)	630, 907
EcoRII	CCWGG	3 cut(s)	495, 675, 702
EcoRV	GATATC	1 cut(s)	271
EcoT14I	CCWWGG	1 cut(s)	383
EcoT38I	GRGCYC	1 cut(s)	977
ErhI	CCWWGG	1 cut(s)	383
FaqI	GGGAC	2 cut(s)	913, 1048
Fnu4HI	GCNGC	6 cut(s)	297, 754, 801, 915, 918, 960
FokI	GGATG	3 cut(s)	478, 521, 658
FriOI	GRGCYC	1 cut(s)	977
Fsp4HI	GCNGC	6 cut(s)	297, 754, 801, 915, 918, 960
FspBI	CTAG	9 cut(s)	176, 233, 311, 371, 626, 635, 873, 978, 1031
GlaI	GCGC	1 cut(s)	768
GluI	GCNGC	6 cut(s)	297, 754, 801, 915, 918, 960
HaeIII	GGCC	4 cut(s)	108, 290, 299, 344
HapII	CCGG	3 cut(s)	105, 260, 300
HhaI	GCGC	1 cut(s)	769
Hin6I	GCGC	1 cut(s)	767
HinP1I	GCGC	1 cut(s)	767
HincII	GTYRAC	1 cut(s)	949
HindII	GTYRAC	1 cut(s)	949
HindIII	AAGCTT	1 cut(s)	15
HinfI	GANTC	6 cut(s)	119, 220, 307, 393, 560, 1000
HpaII	CCGG	3 cut(s)	105, 260, 300
HphI	GGTGA	4 cut(s)	229, 316, 354, 511
Hpy166II	GTNNAC	3 cut(s)	466, 862, 949
Hpy188I	TCNGA	6 cut(s)	124, 434, 565, 586, 787, 848
Hpy188III	TCNNGA	3 cut(s)	155, 557, 970
Hpy8I	GTNNAC	3 cut(s)	466, 862, 949
HpyAV	CCTTC	1 cut(s)	331
HpyCH4III	ACNGT	2 cut(s)	463, 866
HpyCH4V	TGCA	9 cut(s)	417, 452, 611, 671, 756, 836, 917, 959, 985
HpyF10VI	GCNNNNNNNGC	4 cut(s)	296, 414, 797, 1064
HpyF3I	CTNAG	3 cut(s)	254, 339, 762
HspAI	GCGC	1 cut(s)	767
Kzo9I	GATC	2 cut(s)	151, 575
LmnI	GCTCC	2 cut(s)	185, 622
Lsp1109I	GCAGC	5 cut(s)	740, 812, 901, 929, 971
LweI	GCATC	3 cut(s)	439, 680, 765
MaeI	CTAG	9 cut(s)	176, 233, 311, 371, 626, 635, 873, 978, 1031
MaeIII	GTNAC	1 cut(s)	86
MalI	GATC	2 cut(s)	153, 577
MboI	GATC	2 cut(s)	151, 575
MfeI	CAATTG	2 cut(s)	837, 1004
MhlI	GDGCHC	1 cut(s)	977
MlyI	GAGTC	2 cut(s)	229, 554
MmeI	TCCRAC	1 cut(s)	600
MnlI	CCTC	5 cut(s)	334, 708, 727, 862, 990
MseI	TTAA	2 cut(s)	50, 929
MslI	CAYNNNNRTG	2 cut(s)	114, 144
MspA1I	CMGCKG	2 cut(s)	914, 920
MspI	CCGG	3 cut(s)	105, 260, 300
MspR9I	CCNGG	4 cut(s)	301, 497, 677, 704
MunI	CAATTG	2 cut(s)	837, 1004
Mva1269I	GAATGC	1 cut(s)	987
MvaI	CCWGG	3 cut(s)	497, 677, 704
MwoI	GCNNNNNNNGC	4 cut(s)	296, 414, 797, 1064
NciI	CCSGG	1 cut(s)	301
NcoI	CCATGG	1 cut(s)	383
NdeII	GATC	2 cut(s)	151, 575
NheI	GCTAGC	1 cut(s)	872
NlaIV	GGNNCC	2 cut(s)	181, 535
NmuCI	GTSAC	1 cut(s)	86
NspI	RCATGY	1 cut(s)	34
PagI	TCATGA	3 cut(s)	154, 556, 969
PceI	AGGCCT	2 cut(s)	290, 344
PciI	ACATGT	1 cut(s)	30
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PctI	GAATGC	1 cut(s)	987
PfeI	GAWTC	4 cut(s)	119, 307, 393, 1000
PkrI	GCNGC	6 cut(s)	298, 755, 802, 916, 919, 961
PleI	GAGTC	2 cut(s)	228, 554
PpsI	GAGTC	2 cut(s)	228, 554
PscI	ACATGT	1 cut(s)	30
PshBI	ATTAAT	1 cut(s)	50
PsiI	TTATAA	1 cut(s)	650
Psp6I	CCWGG	3 cut(s)	495, 675, 702
PspGI	CCWGG	3 cut(s)	495, 675, 702
PspN4I	GGNNCC	2 cut(s)	181, 535
PspPI	GGNCC	1 cut(s)	102
PstI	CTGCAG	1 cut(s)	919
PvuII	CAGCTG	2 cut(s)	914, 920
RsaI	GTAC	2 cut(s)	170, 467
RsaNI	GTAC	2 cut(s)	169, 466
RseI	CAYNNNNRTG	2 cut(s)	114, 144
SaqAI	TTAA	2 cut(s)	50, 929
SatI	GCNGC	6 cut(s)	297, 754, 801, 915, 918, 960
Sau3AI	GATC	2 cut(s)	151, 575
Sau96I	GGNCC	1 cut(s)	102
SchI	GAGTC	2 cut(s)	229, 554
ScrFI	CCNGG	4 cut(s)	301, 497, 677, 704
SduI	GDGCHC	1 cut(s)	977
SfaNI	GCATC	3 cut(s)	439, 680, 765
SfcI	CTRYAG	2 cut(s)	75, 915
SfiI	GGCCNNNNNGGCC	1 cut(s)	296
SinI	GGWCC	1 cut(s)	102
SmiMI	CAYNNNNRTG	2 cut(s)	114, 144
SseBI	AGGCCT	2 cut(s)	290, 344
SsiI	CCGC	1 cut(s)	296
SspMI	CTAG	9 cut(s)	176, 233, 311, 371, 626, 635, 873, 978, 1031
StuI	AGGCCT	2 cut(s)	290, 344
StyD4I	CCNGG	4 cut(s)	299, 495, 675, 702
StyI	CCWWGG	1 cut(s)	383
TaaI	ACNGT	2 cut(s)	463, 866
TatI	WGTACW	2 cut(s)	168, 465
TauI	GCSGC	1 cut(s)	299
TfiI	GAWTC	4 cut(s)	119, 307, 393, 1000
Tru1I	TTAA	2 cut(s)	50, 929
Tru9I	TTAA	2 cut(s)	50, 929
TscAI	CASTG	3 cut(s)	234, 669, 871
TseFI	GTSAC	1 cut(s)	86
TseI	GCWGC	5 cut(s)	753, 800, 914, 917, 959
Tsp45I	GTSAC	1 cut(s)	86
TspDTI	ATGAA	7 cut(s)	9, 162, 171, 268, 313, 525, 958
TspRI	CASTG	3 cut(s)	234, 669, 871
VpaK11BI	GGWCC	1 cut(s)	102
VspI	ATTAAT	1 cut(s)	50
XagI	CCTNNNNNAGG	1 cut(s)	402
XapI	RAATTY	3 cut(s)	630, 907, 924
XceI	RCATGY	1 cut(s)	34
XspI	CTAG	9 cut(s)	176, 233, 311, 371, 626, 635, 873, 978, 1031

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.