Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002306

Physical Location & Seq

Genomic Coordinates Forward (+)

5534730 .. 5535560

Gene Structure 831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0063700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGCAGCCAGCAATGTCATCTTCAACCTCTCAAGGTCCTCGTTTCCTCAATCCCAGGCTTCACAGTCCCTCAGTCCCTCTCTCAAAACCTCCAGGGTCTGCTTCACCTCCTTCTCCAACTTCTCCAAGGTTGGAAATGCGGCGGAGAAGAGTAGGAACTCAAGTTCTCGCTGGGCGTATGACCACAAGGACTGGAGTACTAAAGCAAAGCAAACCCTGGAAGACGATGTCGAGAGTGGAAAGCAACGCTTCGAGGAACTGAAGGGAGCAGCAACCGATTACGCCAAAGACACGGTGGAGAACGTCAAAGGTGCGGCGGCGACTATAGGAGAGAAAGCCAAGGAGGGGTCGGACAAGGTGGCGGAGTCCGCGGAGAGTACCAAGGAGAAGGTAAAGGAGTATGCAGATGGTGCAACAGAGAAGACAAAAGACTCGGCGGAGACTATAGCGGCGAAGGCCAAGGGGGACAGTAACAAGGTGGTGGACACCACAGTGAGTACCAAGGACACGGCTTACGATGCGGCGGAGAGTGAGGCGGAGACGGTGAAAGATAAGGTGAACGAGGGGACGAGCAAGACGGCGGAGGCGGTGAAGAATTTGAAGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0071944 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

202

Amino Acids

21.66

Weight (kDa)

6.03

Isoelectric Point (pI)

39.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Apolipoprotein	PF01442	67 - 197	7.9e-06	Apolipoprotein A1/A4/E domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12750
fragaria_vesca	FvH4_3g12900 FvH4_3g14490 FvH4_3g14490
malus_domestica	MD05G1236500.v1.1 MD05G1236600.v1.1 MD05G1247200.v1.1 MD10G1227800.v1.1
prunus_persica	Prupe.4G117200_v2.0.a1 Prupe.4G129600_v2.0.a1 Prupe.4G129700_v2.0.a1
pyrus_communis	pycom05g21350 pycom05g22310 pycom10g19130
rosa_chinensis	RchiOBHm_Chr5g0021001 RchiOBHm_Chr5g0023861 RchiOBHm_Chr5g0023871
rosa_laevigata	RLG00000032576 RLG00000032741 RLG00000032742
rosa_multiflora	Rmu_sc0001372.1_g000002 Rmu_sc0001372.1_g000005 Rmu_ssc0000027.1_g000003 Rmu_ssc0000244.1_g000011
rosa_roxburghii	Rroxscaffold_1G00055380 Rroxscaffold_1G00057480
rosa_rugosa	Rorug05G0063700 Rorug05G0079800 Rorug05G0079900
rosa_samantha	Rh5AG153300 Rh5AG169900 Rh5AG170000 Rh5BG153000 Rh5BG167200 Rh5BG167300 Rh5CG165600 Rh5CG182800 Rh5DG152400 Rh5DG169300
rosa_wichuraiana	Rw5G013620 Rw5G015360 Rw5G015370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	371
AcsI	RAATTY	1 cut(s)	595
AcuI	CTGAAG	1 cut(s)	281
AfaI	GTAC	3 cut(s)	199, 379, 499
AfiI	CCNNNNNNNGG	1 cut(s)	345
AgsI	TTSAA	2 cut(s)	25, 601
AjnI	CCWGG	3 cut(s)	54, 92, 216
AleI	CACNNNNGTG	1 cut(s)	491
AloI	GAACNNNNNNTCC	2 cut(s)	148, 180
Alw26I	GTCTC	2 cut(s)	434, 533
AlwNI	CAGNNNCTG	1 cut(s)	99
AoxI	GGCC	1 cut(s)	456
ApeKI	GCWGC	2 cut(s)	5, 269
ApoI	RAATTY	1 cut(s)	595
AspS9I	GGNCC	1 cut(s)	36
AsuHPI	GGTGA	4 cut(s)	97, 556, 568, 601
AvaII	GGWCC	1 cut(s)	36
BbsI	GAAGAC	2 cut(s)	228, 428
BbvI	GCAGC	2 cut(s)	17, 281
BccI	CCATC	1 cut(s)	401
BceAI	ACGGC	2 cut(s)	525, 594
BciT130I	CCWGG	3 cut(s)	56, 94, 218
BcoDI	GTCTC	2 cut(s)	434, 533
BfmI	CTRYAG	2 cut(s)	324, 444
BisI	GCNGC	7 cut(s)	6, 141, 270, 315, 318, 450, 522
BlsI	GCNGC	7 cut(s)	7, 142, 271, 316, 319, 451, 523
BmcAI	AGTACT	1 cut(s)	199
Bme1390I	CCNGG	3 cut(s)	56, 94, 218
Bme18I	GGWCC	1 cut(s)	36
BmgT120I	GGNCC	1 cut(s)	36
BmrFI	CCNGG	3 cut(s)	56, 94, 218
BmsI	GCATC	1 cut(s)	508
BpiI	GAAGAC	2 cut(s)	228, 428
BpmI	CTGGAG	2 cut(s)	76, 214
BpuEI	CTTGAG	2 cut(s)	16, 145
BsaJI	CCNNGG	9 cut(s)	54, 93, 126, 216, 339, 369, 381, 459, 501
Bsc4I	CCNNNNNNNGG	1 cut(s)	345
Bse1I	ACTGG	1 cut(s)	197
Bse3DI	GCAATG	1 cut(s)	19
BseBI	CCWGG	3 cut(s)	56, 94, 218
BseDI	CCNNGG	9 cut(s)	54, 93, 126, 216, 339, 369, 381, 459, 501
BseLI	CCNNNNNNNGG	1 cut(s)	345
BseMI	GCAATG	1 cut(s)	19
BseMII	CTCAG	1 cut(s)	85
BseNI	ACTGG	1 cut(s)	197
BseXI	GCAGC	2 cut(s)	17, 281
BseYI	CCCAGC	1 cut(s)	171
Bsh1236I	CGCG	1 cut(s)	371
BshFI	GGCC	1 cut(s)	458
BslFI	GGGAC	4 cut(s)	52, 60, 479, 580
BslI	CCNNNNNNNGG	1 cut(s)	345
BsmAI	GTCTC	2 cut(s)	434, 533
BsmBI	CGTCTC	1 cut(s)	533
BsmFI	GGGAC	4 cut(s)	52, 60, 479, 580
BsnI	GGCC	1 cut(s)	458
BspANI	GGCC	1 cut(s)	458
BspCNI	CTCAG	1 cut(s)	84
BspFNI	CGCG	1 cut(s)	371
BsrDI	GCAATG	1 cut(s)	19
BsrI	ACTGG	1 cut(s)	197
BssECI	CCNNGG	9 cut(s)	54, 93, 126, 216, 339, 369, 381, 459, 501
BssT1I	CCWWGG	5 cut(s)	126, 339, 381, 459, 501
Bst2UI	CCWGG	3 cut(s)	56, 94, 218
Bst4CI	ACNGT	5 cut(s)	66, 295, 470, 493, 544
Bst6I	CTCTTC	1 cut(s)	143
BstAPI	GCANNNNNTGC	1 cut(s)	410
BstC8I	GCNNGC	1 cut(s)	10
BstDEI	CTNAG	1 cut(s)	71
BstDSI	CCRYGG	1 cut(s)	369
BstFNI	CGCG	1 cut(s)	371
BstMAI	GTCTC	2 cut(s)	434, 533
BstMWI	GCNNNNNNNGC	4 cut(s)	368, 410, 455, 518
BstNI	CCWGG	3 cut(s)	56, 94, 218
BstSCI	CCNGG	3 cut(s)	54, 92, 216
BstSFI	CTRYAG	2 cut(s)	324, 444
BstUI	CGCG	1 cut(s)	371
BstV1I	GCAGC	2 cut(s)	17, 281
BstV2I	GAAGAC	2 cut(s)	228, 428
BsuRI	GGCC	1 cut(s)	458
BtgI	CCRYGG	1 cut(s)	369
BtsIMutI	CAGTG	1 cut(s)	498
Cac8I	GCNNGC	1 cut(s)	10
CaiI	CAGNNNCTG	1 cut(s)	99
Cfr13I	GGNCC	1 cut(s)	36
Cfr42I	CCGCGG	1 cut(s)	372
Csp6I	GTAC	3 cut(s)	198, 378, 498
CviJI	RGCY	5 cut(s)	8, 59, 338, 458, 512
CviKI_1	RGCY	5 cut(s)	8, 59, 338, 458, 512
CviQI	GTAC	3 cut(s)	198, 378, 498
DdeI	CTNAG	1 cut(s)	71
Eam1104I	CTCTTC	1 cut(s)	143
EarI	CTCTTC	1 cut(s)	143
EciI	GGCGGA	6 cut(s)	158, 377, 452, 539, 551, 596
Eco130I	CCWWGG	5 cut(s)	126, 339, 381, 459, 501
Eco47I	GGWCC	1 cut(s)	36
Eco57I	CTGAAG	1 cut(s)	281
EcoO109I	RGGNCCY	1 cut(s)	36
EcoRII	CCWGG	3 cut(s)	54, 92, 216
EcoT14I	CCWWGG	5 cut(s)	126, 339, 381, 459, 501
ErhI	CCWWGG	5 cut(s)	126, 339, 381, 459, 501
Esp3I	CGTCTC	1 cut(s)	533
FaiI	YATR	4 cut(s)	180, 326, 402, 446
FalI	AAGNNNNNCTT	2 cut(s)	233, 265
FaqI	GGGAC	4 cut(s)	52, 60, 479, 580
Fnu4HI	GCNGC	7 cut(s)	6, 141, 270, 315, 318, 450, 522
Fsp4HI	GCNGC	7 cut(s)	6, 141, 270, 315, 318, 450, 522
GluI	GCNGC	7 cut(s)	6, 141, 270, 315, 318, 450, 522
GsaI	CCCAGC	1 cut(s)	175
GsuI	CTGGAG	2 cut(s)	76, 214
HaeIII	GGCC	1 cut(s)	458
HinfI	GANTC	2 cut(s)	365, 431
HphI	GGTGA	4 cut(s)	97, 556, 568, 601
Hpy166II	GTNNAC	2 cut(s)	484, 559
Hpy188I	TCNGA	1 cut(s)	352
Hpy188III	TCNNGA	1 cut(s)	232
Hpy8I	GTNNAC	2 cut(s)	484, 559
HpyAV	CCTTC	4 cut(s)	121, 256, 382, 448
HpyCH4III	ACNGT	5 cut(s)	66, 295, 470, 493, 544
HpyCH4IV	ACGT	1 cut(s)	303
HpyCH4V	TGCA	2 cut(s)	404, 413
HpyF10VI	GCNNNNNNNGC	4 cut(s)	368, 410, 455, 518
HpyF3I	CTNAG	1 cut(s)	71
HpySE526I	ACGT	1 cut(s)	303
KspI	CCGCGG	1 cut(s)	372
LmnI	GCTCC	1 cut(s)	266
LpnPI	CCDG	9 cut(s)	22, 41, 68, 79, 106, 157, 178, 203, 230
Lsp1109I	GCAGC	2 cut(s)	17, 281
LweI	GCATC	1 cut(s)	508
MaeII	ACGT	1 cut(s)	303
MaeIII	GTNAC	1 cut(s)	470
MboII	GAAGA	5 cut(s)	13, 160, 233, 433, 604
MluCI	AATT	1 cut(s)	595
MlyI	GAGTC	2 cut(s)	374, 425
MmeI	TCCRAC	3 cut(s)	112, 141, 330
MslI	CAYNNNNRTG	1 cut(s)	491
MspA1I	CMGCKG	1 cut(s)	371
MspR9I	CCNGG	3 cut(s)	56, 94, 218
MvaI	CCWGG	3 cut(s)	56, 94, 218
MvnI	CGCG	1 cut(s)	371
MwoI	GCNNNNNNNGC	4 cut(s)	368, 410, 455, 518
NmeAIII	GCCGAG	1 cut(s)	413
OliI	CACNNNNGTG	1 cut(s)	491
PflFI	GACNNNGTC	1 cut(s)	227
PkrI	GCNGC	7 cut(s)	7, 142, 271, 316, 319, 451, 523
PleI	GAGTC	2 cut(s)	373, 425
PpsI	GAGTC	2 cut(s)	373, 425
PpuMI	RGGWCCY	1 cut(s)	36
Psp5II	RGGWCCY	1 cut(s)	36
Psp6I	CCWGG	3 cut(s)	54, 92, 216
PspFI	CCCAGC	1 cut(s)	171
PspGI	CCWGG	3 cut(s)	54, 92, 216
PspPI	GGNCC	1 cut(s)	36
PspPPI	RGGWCCY	1 cut(s)	36
PstNI	CAGNNNCTG	1 cut(s)	99
PsyI	GACNNNGTC	1 cut(s)	227
RsaI	GTAC	3 cut(s)	199, 379, 499
RsaNI	GTAC	3 cut(s)	198, 378, 498
RseI	CAYNNNNRTG	1 cut(s)	491
SacII	CCGCGG	1 cut(s)	372
SatI	GCNGC	7 cut(s)	6, 141, 270, 315, 318, 450, 522
Sau96I	GGNCC	1 cut(s)	36
ScaI	AGTACT	1 cut(s)	199
SchI	GAGTC	2 cut(s)	374, 425
ScrFI	CCNGG	3 cut(s)	56, 94, 218
SfaNI	GCATC	1 cut(s)	508
SfcI	CTRYAG	2 cut(s)	324, 444
Sfr303I	CCGCGG	1 cut(s)	372
SgrBI	CCGCGG	1 cut(s)	372
SinI	GGWCC	1 cut(s)	36
SmiMI	CAYNNNNRTG	1 cut(s)	491
SmlI	CTYRAG	2 cut(s)	31, 160
SmoI	CTYRAG	2 cut(s)	31, 160
Sse9I	AATT	1 cut(s)	595
StyD4I	CCNGG	3 cut(s)	54, 92, 216
StyI	CCWWGG	5 cut(s)	126, 339, 381, 459, 501
TaaI	ACNGT	5 cut(s)	66, 295, 470, 493, 544
TaiI	ACGT	1 cut(s)	306
TaqI	TCGA	2 cut(s)	231, 252
TasI	AATT	1 cut(s)	595
TatI	WGTACW	1 cut(s)	197
TauI	GCSGC	5 cut(s)	143, 317, 320, 452, 524
TscAI	CASTG	1 cut(s)	498
TseI	GCWGC	2 cut(s)	5, 269
TspRI	CASTG	1 cut(s)	498
Tth111I	GACNNNGTC	1 cut(s)	227
VpaK11BI	GGWCC	1 cut(s)	36
XapI	RAATTY	1 cut(s)	595
XcmI	CCANNNNNNNNNTGG	1 cut(s)	292
ZrmI	AGTACT	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.