Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002306

Physical Location & Seq

Genomic Coordinates Forward (+)

6343692 .. 6345981

Gene Structure 2290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G117200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGAGAAAGCTCACTCCATCTCACACTCTTCTTCTTCTTCTTCTTCTGTTTGTCCCCATTTTGGTTTCTGCAGAATGCACATGTAGCAAAGAAACCCAACACCATGACAAGGTCAAGGTTCTCAAGTTCAAGCTAGTTGCAATAAGTTCAATCCTCATAGCCAGTGTGCTTGGTGTCTCTCTCCCAATGTTGGGCAAGAAAATCCCAACTCTGCGCCCCGAAAACGATATCTTCTTCATGATCAAAGCCTTTGCTGCTGGCGTGATTCTAGCAACAGGGTTCATCCATATCTTGCCTGAGGCATTTGAGAGCTTGACAAGCCCCTGCCTCAGCCAAACACCATGGGGGAATTTCCCATTTACCGGCTTCATTGCAATGCTTTCGGCTATTGGGACGATGATGATCGATACCTTTGCCACCAGTTATTACAGAAGGTCACATTTCACTAAAGCACTGCCAGTGAAAGAGGATGAGGAGATGCATGGGGTGCATGAGGGTCATGTGCATGTTCATACTCATGCCACACATGGTCATGCCCATGGATCCGGTGCAATTTTACCGGAGGATTCAGCTTCATCTTTCGAGCTTATTAGGCATCGAGTGATATCACAGGTTCTGGAGCTTGGGATCGTGGTTCATTCAGTCATCATTGGGATATCTTTAGGTGCCTCTCAGAGTCCCAGAACAATCAAACCTCTGGTAGCAGCTTTGACTTTCCATCAATTTTTTGAAGGCATGGGCCTTGGTGGCTGCATCTCTCAGGCCAAATTCAAGTCCAGGGCTATTGCAACCATGGTGCTTTTCTTCTCCCTCACCACCCCAATTGGAATTGGTGTTGGAATGGGAATATCAAACATTTACAATGAGAGCAGCCCAACTGCTCTGATTGTGGAGGGGGTTTTCAACTCTGCTTCAGCTGGGATTCTAATATACATGGCTCTGGTTGACCTTCTAGCAGCAGATTTCATGAACCCTAGAATGCAAGGCAATTTAAGGATCCAGCTTGGGGCTAATATTTCACTTCTTTTGGGTTCTGGCTGTATGTCACTCTTGGCAAAATGGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0071944 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

356

Amino Acids

38.27

Weight (kDa)

8.58

Isoelectric Point (pI)

36.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12750
fragaria_vesca	FvH4_3g12900 FvH4_3g14490 FvH4_3g14490
malus_domestica	MD05G1236500.v1.1 MD05G1236600.v1.1 MD05G1247200.v1.1 MD10G1227800.v1.1
prunus_persica	Prupe.4G117200_v2.0.a1 Prupe.4G129600_v2.0.a1 Prupe.4G129700_v2.0.a1
pyrus_communis	pycom05g21350 pycom05g22310 pycom10g19130
rosa_chinensis	RchiOBHm_Chr5g0021001 RchiOBHm_Chr5g0023861 RchiOBHm_Chr5g0023871
rosa_laevigata	RLG00000032576 RLG00000032741 RLG00000032742
rosa_multiflora	Rmu_sc0001372.1_g000002 Rmu_sc0001372.1_g000005 Rmu_ssc0000027.1_g000003 Rmu_ssc0000244.1_g000011
rosa_roxburghii	Rroxscaffold_1G00055380 Rroxscaffold_1G00057480
rosa_rugosa	Rorug05G0063700 Rorug05G0079800 Rorug05G0079900
rosa_samantha	Rh5AG153300 Rh5AG169900 Rh5AG170000 Rh5BG153000 Rh5BG167200 Rh5BG167300 Rh5CG165600 Rh5CG182800 Rh5DG152400 Rh5DG169300
rosa_wichuraiana	Rw5G013620 Rw5G015360 Rw5G015370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	665
AclWI	GGATC	5 cut(s)	537, 550, 635, 991, 1004
AcsI	RAATTY	2 cut(s)	349, 767
AcuI	CTGAAG	1 cut(s)	897
AfiI	CCNNNNNNNGG	6 cut(s)	61, 109, 190, 191, 362, 1006
AflIII	ACRYGT	1 cut(s)	80
AgsI	TTSAA	5 cut(s)	130, 150, 731, 772, 904
AjnI	CCWGG	1 cut(s)	776
AluBI	AGCT	9 cut(s)	10, 133, 312, 572, 586, 622, 707, 917, 1003
AluI	AGCT	9 cut(s)	10, 133, 312, 572, 586, 622, 707, 917, 1003
Alw26I	GTCTC	1 cut(s)	181
AlwI	GGATC	5 cut(s)	537, 550, 635, 991, 1004
AlwNI	CAGNNNCTG	1 cut(s)	616
AoxI	GGCC	3 cut(s)	739, 762, 1062
ApeKI	GCWGC	5 cut(s)	254, 704, 750, 870, 956
ApoI	RAATTY	2 cut(s)	349, 767
AspLEI	GCGC	1 cut(s)	216
AspS9I	GGNCC	2 cut(s)	739, 1062
AsuHPI	GGTGA	1 cut(s)	805
AxyI	CCTNAGG	1 cut(s)	297
BamHI	GGATCC	2 cut(s)	542, 996
BanI	GGYRCC	1 cut(s)	665
BbvCI	CCTCAGC	1 cut(s)	329
BbvI	GCAGC	5 cut(s)	241, 716, 737, 882, 968
BccI	CCATC	2 cut(s)	25, 726
BcgI	CGANNNNNNTGC	4 cut(s)	363, 395, 397, 429
BciT130I	CCWGG	1 cut(s)	778
BclI	TGATCA	1 cut(s)	240
BcoDI	GTCTC	1 cut(s)	181
BfaI	CTAG	4 cut(s)	134, 269, 953, 975
BfmI	CTRYAG	1 cut(s)	69
BglI	GCCNNNNNGGC	1 cut(s)	747
BisI	GCNGC	5 cut(s)	255, 705, 751, 871, 957
BlsI	GCNGC	5 cut(s)	256, 706, 752, 872, 958
Bme1390I	CCNGG	1 cut(s)	778
BmgT120I	GGNCC	2 cut(s)	739, 1062
BmiI	GGNNCC	3 cut(s)	544, 667, 998
BmrFI	CCNGG	1 cut(s)	778
BmsI	GCATC	3 cut(s)	468, 604, 762
BpmI	CTGGAG	1 cut(s)	638
Bpu10I	CCTNAGC	1 cut(s)	329
BpuEI	CTTGAG	1 cut(s)	107
Bsa29I	ATCGAT	1 cut(s)	405
BsaBI	GATNNNNATC	1 cut(s)	401
BsaJI	CCNNGG	5 cut(s)	341, 538, 742, 777, 792
BsaWI	WCCGGW	2 cut(s)	545, 559
Bsc4I	CCNNNNNNNGG	6 cut(s)	61, 109, 190, 191, 362, 1006
Bse118I	RCCGGY	1 cut(s)	362
Bse1I	ACTGG	3 cut(s)	162, 420, 458
Bse21I	CCTNAGG	1 cut(s)	297
Bse3DI	GCAATG	2 cut(s)	369, 381
Bse8I	GATNNNNATC	1 cut(s)	401
BseBI	CCWGG	1 cut(s)	778
BseCI	ATCGAT	1 cut(s)	405
BseDI	CCNNGG	5 cut(s)	341, 538, 742, 777, 792
BseGI	GGATG	2 cut(s)	282, 475
BseJI	GATNNNNATC	1 cut(s)	401
BseLI	CCNNNNNNNGG	6 cut(s)	61, 109, 190, 191, 362, 1006
BseMI	GCAATG	2 cut(s)	369, 381
BseMII	CTCAG	4 cut(s)	288, 343, 686, 773
BseNI	ACTGG	3 cut(s)	162, 420, 458
BseRI	GAGGAG	1 cut(s)	488
BseXI	GCAGC	5 cut(s)	241, 716, 737, 882, 968
BseYI	CCCAGC	1 cut(s)	917
BshFI	GGCC	3 cut(s)	741, 764, 1064
BshNI	GGYRCC	1 cut(s)	665
BshVI	ATCGAT	1 cut(s)	405
BsiSI	CCGG	3 cut(s)	363, 546, 560
BslFI	GGGAC	3 cut(s)	38, 406, 663
BslI	CCNNNNNNNGG	6 cut(s)	61, 109, 190, 191, 362, 1006
BsmAI	GTCTC	1 cut(s)	181
BsmFI	GGGAC	3 cut(s)	38, 406, 663
BsmI	GAATGC	2 cut(s)	80, 984
BsnI	GGCC	3 cut(s)	741, 764, 1064
Bsp143I	GATC	5 cut(s)	240, 402, 542, 627, 996
Bsp19I	CCATGG	3 cut(s)	341, 538, 792
BspANI	GGCC	3 cut(s)	741, 764, 1064
BspCNI	CTCAG	4 cut(s)	289, 342, 685, 772
BspDI	ATCGAT	1 cut(s)	405
BspHI	TCATGA	2 cut(s)	237, 966
BspLI	GGNNCC	3 cut(s)	544, 667, 998
BspMAI	CTGCAG	1 cut(s)	73
BspPI	GGATC	5 cut(s)	537, 550, 635, 991, 1004
BspT107I	GGYRCC	1 cut(s)	665
BsrDI	GCAATG	2 cut(s)	369, 381
BsrFI	RCCGGY	1 cut(s)	362
BsrI	ACTGG	3 cut(s)	162, 420, 458
BssAI	RCCGGY	1 cut(s)	362
BssECI	CCNNGG	5 cut(s)	341, 538, 742, 777, 792
BssMI	GATC	5 cut(s)	240, 402, 542, 627, 996
BssT1I	CCWWGG	4 cut(s)	341, 538, 742, 792
Bst2UI	CCWGG	1 cut(s)	778
Bst6I	CTCTTC	1 cut(s)	33
BstAPI	GCANNNNNTGC	1 cut(s)	487
BstC8I	GCNNGC	1 cut(s)	259
BstDEI	CTNAG	4 cut(s)	297, 329, 672, 759
BstDSI	CCRYGG	3 cut(s)	341, 538, 792
BstF5I	GGATG	2 cut(s)	282, 475
BstHHI	GCGC	1 cut(s)	216
BstKTI	GATC	5 cut(s)	243, 405, 545, 630, 999
BstMAI	GTCTC	1 cut(s)	181
BstMBI	GATC	5 cut(s)	240, 402, 542, 627, 996
BstMWI	GCNNNNNNNGC	7 cut(s)	84, 254, 318, 487, 592, 747, 1061
BstNI	CCWGG	1 cut(s)	778
BstNSI	RCATGY	2 cut(s)	84, 509
BstSCI	CCNGG	1 cut(s)	776
BstSFI	CTRYAG	1 cut(s)	69
BstV1I	GCAGC	5 cut(s)	241, 716, 737, 882, 968
BstX2I	RGATCY	2 cut(s)	542, 996
BstYI	RGATCY	2 cut(s)	542, 996
Bsu15I	ATCGAT	1 cut(s)	405
Bsu36I	CCTNAGG	1 cut(s)	297
BsuRI	GGCC	3 cut(s)	741, 764, 1064
BsuTUI	ATCGAT	1 cut(s)	405
BtgI	CCRYGG	3 cut(s)	341, 538, 792
BtsCI	GGATG	2 cut(s)	282, 475
BtsI	GCAGTG	1 cut(s)	452
BtsIMutI	CAGTG	3 cut(s)	169, 452, 465
Cac8I	GCNNGC	1 cut(s)	259
CaiI	CAGNNNCTG	1 cut(s)	616
CciI	TCATGA	2 cut(s)	237, 966
CfoI	GCGC	1 cut(s)	216
Cfr10I	RCCGGY	1 cut(s)	362
Cfr13I	GGNCC	2 cut(s)	739, 1062
ClaI	ATCGAT	1 cut(s)	405
CspCI	CAANNNNNGTGG	2 cut(s)	805, 840
DdeI	CTNAG	4 cut(s)	297, 329, 672, 759
DpnI	GATC	5 cut(s)	242, 404, 544, 629, 998
DpnII	GATC	5 cut(s)	240, 402, 542, 627, 996
Eam1104I	CTCTTC	1 cut(s)	33
EarI	CTCTTC	1 cut(s)	33
Eco130I	CCWWGG	4 cut(s)	341, 538, 742, 792
Eco32I	GATATC	3 cut(s)	229, 606, 657
Eco57I	CTGAAG	1 cut(s)	897
Eco81I	CCTNAGG	1 cut(s)	297
EcoRII	CCWGG	1 cut(s)	776
EcoRV	GATATC	3 cut(s)	229, 606, 657
EcoT14I	CCWWGG	4 cut(s)	341, 538, 742, 792
EcoT22I	ATGCAT	1 cut(s)	483
ErhI	CCWWGG	4 cut(s)	341, 538, 742, 792
FaqI	GGGAC	3 cut(s)	38, 406, 663
FbaI	TGATCA	1 cut(s)	240
Fnu4HI	GCNGC	5 cut(s)	255, 705, 751, 871, 957
FokI	GGATG	2 cut(s)	269, 482
Fsp4HI	GCNGC	5 cut(s)	255, 705, 751, 871, 957
FspBI	CTAG	4 cut(s)	134, 269, 953, 975
GlaI	GCGC	1 cut(s)	215
GluI	GCNGC	5 cut(s)	255, 705, 751, 871, 957
GsaI	CCCAGC	1 cut(s)	921
GsuI	CTGGAG	1 cut(s)	638
HaeIII	GGCC	3 cut(s)	741, 764, 1064
HapII	CCGG	3 cut(s)	363, 546, 560
HhaI	GCGC	1 cut(s)	216
Hin6I	GCGC	1 cut(s)	214
HinP1I	GCGC	1 cut(s)	214
HincII	GTYRAC	1 cut(s)	946
HindII	GTYRAC	1 cut(s)	946
HinfI	GANTC	4 cut(s)	265, 566, 676, 922
HpaII	CCGG	3 cut(s)	363, 546, 560
HphI	GGTGA	1 cut(s)	805
Hpy166II	GTNNAC	1 cut(s)	946
Hpy188I	TCNGA	2 cut(s)	675, 885
Hpy188III	TCNNGA	3 cut(s)	238, 617, 967
Hpy8I	GTNNAC	1 cut(s)	946
HpyAV	CCTTC	3 cut(s)	426, 725, 959
HpyF10VI	GCNNNNNNNGC	7 cut(s)	84, 254, 318, 487, 592, 747, 1061
HpyF3I	CTNAG	4 cut(s)	297, 329, 672, 759
HspAI	GCGC	1 cut(s)	214
Ksp22I	TGATCA	1 cut(s)	240
Kzo9I	GATC	5 cut(s)	240, 402, 542, 627, 996
LmnI	GCTCC	1 cut(s)	619
Lsp1109I	GCAGC	5 cut(s)	241, 716, 737, 882, 968
LweI	GCATC	3 cut(s)	468, 604, 762
MaeI	CTAG	4 cut(s)	134, 269, 953, 975
MaeIII	GTNAC	2 cut(s)	435, 1044
MalI	GATC	5 cut(s)	242, 404, 544, 629, 998
MboI	GATC	5 cut(s)	240, 402, 542, 627, 996
MboII	GAAGA	9 cut(s)	20, 23, 26, 29, 32, 35, 223, 226, 796
MfeI	CAATTG	1 cut(s)	822
MflI	RGATCY	2 cut(s)	542, 996
MluCI	AATT	7 cut(s)	349, 552, 722, 767, 822, 828, 988
MlyI	GAGTC	1 cut(s)	685
MmeI	TCCRAC	1 cut(s)	817
Mph1103I	ATGCAT	1 cut(s)	483
MseI	TTAA	1 cut(s)	992
MslI	CAYNNNNRTG	5 cut(s)	374, 504, 516, 531, 537
MspA1I	CMGCKG	1 cut(s)	917
MspI	CCGG	3 cut(s)	363, 546, 560
MspR9I	CCNGG	1 cut(s)	778
MunI	CAATTG	1 cut(s)	822
Mva1269I	GAATGC	2 cut(s)	80, 984
MvaI	CCWGG	1 cut(s)	778
MwoI	GCNNNNNNNGC	7 cut(s)	84, 254, 318, 487, 592, 747, 1061
NcoI	CCATGG	3 cut(s)	341, 538, 792
NdeII	GATC	5 cut(s)	240, 402, 542, 627, 996
NlaIV	GGNNCC	3 cut(s)	544, 667, 998
NmuCI	GTSAC	2 cut(s)	435, 1044
NsiI	ATGCAT	1 cut(s)	483
NspI	RCATGY	2 cut(s)	84, 509
PagI	TCATGA	2 cut(s)	237, 966
PciI	ACATGT	1 cut(s)	80
PctI	GAATGC	2 cut(s)	80, 984
PfeI	GAWTC	3 cut(s)	265, 566, 922
PflFI	GACNNNGTC	1 cut(s)	110
PkrI	GCNGC	5 cut(s)	256, 706, 752, 872, 958
PleI	GAGTC	1 cut(s)	684
PpsI	GAGTC	1 cut(s)	684
PscI	ACATGT	1 cut(s)	80
Psp6I	CCWGG	1 cut(s)	776
PspFI	CCCAGC	1 cut(s)	917
PspGI	CCWGG	1 cut(s)	776
PspN4I	GGNNCC	3 cut(s)	544, 667, 998
PspPI	GGNCC	2 cut(s)	739, 1062
PstI	CTGCAG	1 cut(s)	73
PstNI	CAGNNNCTG	1 cut(s)	616
PsuI	RGATCY	2 cut(s)	542, 996
PsyI	GACNNNGTC	1 cut(s)	110
PvuII	CAGCTG	1 cut(s)	917
RseI	CAYNNNNRTG	5 cut(s)	374, 504, 516, 531, 537
SaqAI	TTAA	1 cut(s)	992
SatI	GCNGC	5 cut(s)	255, 705, 751, 871, 957
Sau3AI	GATC	5 cut(s)	240, 402, 542, 627, 996
Sau96I	GGNCC	2 cut(s)	739, 1062
SchI	GAGTC	1 cut(s)	685
ScrFI	CCNGG	1 cut(s)	778
SfaNI	GCATC	3 cut(s)	468, 604, 762
SfcI	CTRYAG	1 cut(s)	69
SmiMI	CAYNNNNRTG	5 cut(s)	374, 504, 516, 531, 537
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	7 cut(s)	349, 552, 722, 767, 822, 828, 988
SspI	AATATT	1 cut(s)	1015
SspMI	CTAG	4 cut(s)	134, 269, 953, 975
StyD4I	CCNGG	1 cut(s)	776
StyI	CCWWGG	4 cut(s)	341, 538, 742, 792
TaqI	TCGA	3 cut(s)	405, 582, 598
TasI	AATT	7 cut(s)	349, 552, 722, 767, 822, 828, 988
TfiI	GAWTC	3 cut(s)	265, 566, 922
Tru1I	TTAA	1 cut(s)	992
Tru9I	TTAA	1 cut(s)	992
TscAI	CASTG	3 cut(s)	169, 459, 465
TseFI	GTSAC	2 cut(s)	435, 1044
TseI	GCWGC	5 cut(s)	254, 704, 750, 870, 956
Tsp45I	GTSAC	2 cut(s)	435, 1044
TspDTI	ATGAA	8 cut(s)	226, 271, 358, 500, 564, 626, 955, 983
TspRI	CASTG	3 cut(s)	169, 459, 465
Tth111I	GACNNNGTC	1 cut(s)	110
XapI	RAATTY	2 cut(s)	349, 767
XceI	RCATGY	2 cut(s)	84, 509
XspI	CTAG	4 cut(s)	134, 269, 953, 975
Zsp2I	ATGCAT	1 cut(s)	483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.