Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002306

Physical Location & Seq

Genomic Coordinates Reverse (-)

7147408 .. 7149232

Gene Structure 1825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G129700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGTTCACTTTTCAATTAGCTCCCTCTTTCAACATGTTAAGGATAATATCCATCTTAATTTTTCTTTTTCCCACTATGGTATTTGGAGACTGTACATGTGAATCCGAGGACACAGAGCACAACAAAGAAGCTGCACTCAAGTACAAACTAGGTTCCATAGCTTCCATCCTTGTTGCTGGTGCTGTTGGGGTCAGTCTGCCATTGCTAGGCAAGAAAATCCCAACTCTAAGACCCGAAAACGACATCTTCTTCATGATCAAGGCCTTCGCAGCCGGCGTCATTCTAGCAACTGCGTTCATTCACATACTACCAGATGCATTTGACAACTTGACCTCACCATGTCTTAAAGAAAATCCATGGGGAAAATTTCCCTTCACTGGTTTTGTTGCCATGCTATCTGCCATTGGAACACTGATGGTTGATTCATTGGCAACCGGTTACTATCAGAGGTCCAACATAAAGTCCAACCAAGTTCATGAATTGGAGACGGGTGATCGTGTACATGGTCATGCAGCAGATCATGTACATGGCCACACACATGCCACACAGAGTCATGCTCATGGCTCTGAAGAATTGATGTCATCAGAATTAATCAGGAACCGTGTCATTTCGCAAGTCTTGGAGCTGGGGATCCTAGTTCACTCAGTTATAATTGGAATATCATTGGGTGCTTCCCAAAGCCCTGAAACAATAAAGCCTCTCATGGTGGCTCTGTCTTTCCATCAATTCTTTGAGGGCGTGGGACTTGGTGGCTGCATCTCCCAGGCTAAATTCAAGTCTCGGTCTGCAGCTATCATGGCTGCATTTTTCTCCCTCACAACCCCAGTAGGGATTGCAATTGGCATTGGCATATCAACCGTTTACAATGAGAGCAGTCCCACTGCTCTAATTGTTGAAGGGACTTTCAATGCTGCTGCAGCTGGGATTTTGATTTACATGGCTCTTGTTGACCTACTGGCAGCTGATTTCATGAACCCTAGACTGCAAAGCAATTTGGGGATTCAATTAGGAGCATATATTTCACTTCTTCTGGGGACTGGTTGTATGTCTGTCTTAGCCAAGTGGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0071944 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

357

Amino Acids

38.1

Weight (kDa)

6.21

Isoelectric Point (pI)

37.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12750
fragaria_vesca	FvH4_3g12900 FvH4_3g14490 FvH4_3g14490
malus_domestica	MD05G1236500.v1.1 MD05G1236600.v1.1 MD05G1247200.v1.1 MD10G1227800.v1.1
prunus_persica	Prupe.4G117200_v2.0.a1 Prupe.4G129600_v2.0.a1 Prupe.4G129700_v2.0.a1
pyrus_communis	pycom05g21350 pycom05g22310 pycom10g19130
rosa_chinensis	RchiOBHm_Chr5g0021001 RchiOBHm_Chr5g0023861 RchiOBHm_Chr5g0023871
rosa_laevigata	RLG00000032576 RLG00000032741 RLG00000032742
rosa_multiflora	Rmu_sc0001372.1_g000002 Rmu_sc0001372.1_g000005 Rmu_ssc0000027.1_g000003 Rmu_ssc0000244.1_g000011
rosa_roxburghii	Rroxscaffold_1G00055380 Rroxscaffold_1G00057480
rosa_rugosa	Rorug05G0063700 Rorug05G0079800 Rorug05G0079900
rosa_samantha	Rh5AG153300 Rh5AG169900 Rh5AG170000 Rh5BG153000 Rh5BG167200 Rh5BG167300 Rh5CG165600 Rh5CG182800 Rh5DG152400 Rh5DG169300
rosa_wichuraiana	Rw5G013620 Rw5G015360 Rw5G015370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	650
AclWI	GGATC	2 cut(s)	625, 638
AcoI	YGGCCR	1 cut(s)	529
AcsI	RAATTY	2 cut(s)	365, 770
AcuI	CTGAAG	1 cut(s)	588
AcyI	GRCGYC	1 cut(s)	276
AfaI	GTAC	4 cut(s)	94, 143, 501, 525
AfiI	CCNNNNNNNGG	3 cut(s)	206, 377, 828
AflIII	ACRYGT	2 cut(s)	33, 95
AgeI	ACCGGT	1 cut(s)	434
AgsI	TTSAA	6 cut(s)	14, 31, 775, 896, 907, 1004
AjnI	CCWGG	1 cut(s)	762
AluBI	AGCT	7 cut(s)	20, 131, 161, 625, 791, 920, 962
AluI	AGCT	7 cut(s)	20, 131, 161, 625, 791, 920, 962
Alw21I	GWGCWC	1 cut(s)	120
Alw26I	GTCTC	3 cut(s)	81, 479, 783
AlwI	GGATC	2 cut(s)	625, 638
AoxI	GGCC	2 cut(s)	261, 529
ApoI	RAATTY	2 cut(s)	365, 770
AseI	ATTAAT	1 cut(s)	590
AsiGI	ACCGGT	1 cut(s)	434
AspS9I	GGNCC	1 cut(s)	450
AsuHPI	GGTGA	2 cut(s)	327, 503
AvaII	GGWCC	1 cut(s)	450
BalI	TGGCCA	1 cut(s)	531
BamHI	GGATCC	1 cut(s)	630
Bbv12I	GWGCWC	1 cut(s)	120
BccI	CCATC	4 cut(s)	59, 173, 409, 729
BciT130I	CCWGG	1 cut(s)	764
BclI	TGATCA	1 cut(s)	255
BcoDI	GTCTC	3 cut(s)	81, 479, 783
BfaI	CTAG	5 cut(s)	149, 206, 284, 635, 978
BfmI	CTRYAG	2 cut(s)	786, 915
BglI	GCCNNNNNGGC	1 cut(s)	1064
Bme1390I	CCNGG	1 cut(s)	764
Bme18I	GGWCC	1 cut(s)	450
BmgT120I	GGNCC	1 cut(s)	450
BmiI	GGNNCC	3 cut(s)	154, 599, 632
BmrFI	CCNGG	1 cut(s)	764
BmrI	ACTGGG	1 cut(s)	818
BmsI	GCATC	2 cut(s)	304, 765
BmuI	ACTGGG	1 cut(s)	818
BplI	GAGNNNNNCTC	2 cut(s)	541, 573
BpuEI	CTTGAG	1 cut(s)	122
BsaHI	GRCGYC	1 cut(s)	276
BsaJI	CCNNGG	3 cut(s)	105, 356, 762
BsaWI	WCCGGW	1 cut(s)	434
Bsc4I	CCNNNNNNNGG	3 cut(s)	206, 377, 828
Bse118I	RCCGGY	2 cut(s)	272, 434
Bse1I	ACTGG	4 cut(s)	382, 824, 960, 1042
Bse3DI	GCAATG	1 cut(s)	200
BseBI	CCWGG	1 cut(s)	764
BseDI	CCNNGG	3 cut(s)	105, 356, 762
BseGI	GGATG	1 cut(s)	165
BseLI	CCNNNNNNNGG	3 cut(s)	206, 377, 828
BseMI	GCAATG	1 cut(s)	200
BseMII	CTCAG	1 cut(s)	657
BseNI	ACTGG	4 cut(s)	382, 824, 960, 1042
BseYI	CCCAGC	2 cut(s)	625, 920
BsgI	GTGCAG	1 cut(s)	117
BshFI	GGCC	2 cut(s)	263, 531
BshTI	ACCGGT	1 cut(s)	434
BsiHKAI	GWGCWC	1 cut(s)	120
BsiSI	CCGG	2 cut(s)	273, 435
BslFI	GGGAC	4 cut(s)	756, 861, 913, 1048
BslI	CCNNNNNNNGG	3 cut(s)	206, 377, 828
BsmAI	GTCTC	3 cut(s)	81, 479, 783
BsmBI	CGTCTC	1 cut(s)	479
BsmFI	GGGAC	4 cut(s)	756, 861, 913, 1048
BsnI	GGCC	2 cut(s)	263, 531
Bsp1286I	GDGCHC	1 cut(s)	120
Bsp1407I	TGTACA	3 cut(s)	92, 499, 523
Bsp143I	GATC	4 cut(s)	255, 493, 517, 630
Bsp19I	CCATGG	1 cut(s)	356
BspANI	GGCC	2 cut(s)	263, 531
BspCNI	CTCAG	1 cut(s)	656
BspHI	TCATGA	3 cut(s)	252, 475, 969
BspLI	GGNNCC	3 cut(s)	154, 599, 632
BspMAI	CTGCAG	2 cut(s)	790, 919
BspPI	GGATC	2 cut(s)	625, 638
BsrDI	GCAATG	1 cut(s)	200
BsrFI	RCCGGY	2 cut(s)	272, 434
BsrGI	TGTACA	3 cut(s)	92, 499, 523
BsrI	ACTGG	4 cut(s)	382, 824, 960, 1042
BssAI	RCCGGY	2 cut(s)	272, 434
BssECI	CCNNGG	3 cut(s)	105, 356, 762
BssMI	GATC	4 cut(s)	255, 493, 517, 630
BssNI	GRCGYC	1 cut(s)	276
BssT1I	CCWWGG	1 cut(s)	356
Bst2UI	CCWGG	1 cut(s)	764
Bst4CI	ACNGT	3 cut(s)	92, 602, 859
BstACI	GRCGYC	1 cut(s)	276
BstAUI	TGTACA	3 cut(s)	92, 499, 523
BstC8I	GCNNGC	1 cut(s)	274
BstDEI	CTNAG	3 cut(s)	227, 643, 1054
BstDSI	CCRYGG	1 cut(s)	356
BstF5I	GGATG	1 cut(s)	165
BstKTI	GATC	4 cut(s)	258, 496, 520, 633
BstMAI	GTCTC	3 cut(s)	81, 479, 783
BstMBI	GATC	4 cut(s)	255, 493, 517, 630
BstMWI	GCNNNNNNNGC	4 cut(s)	269, 797, 917, 1064
BstNI	CCWGG	1 cut(s)	764
BstNSI	RCATGY	3 cut(s)	37, 99, 542
BstSCI	CCNGG	1 cut(s)	762
BstSFI	CTRYAG	2 cut(s)	786, 915
BstX2I	RGATCY	1 cut(s)	630
BstYI	RGATCY	1 cut(s)	630
BsuRI	GGCC	2 cut(s)	263, 531
BtgI	CCRYGG	1 cut(s)	356
BtsCI	GGATG	1 cut(s)	165
BtsI	GCAGTG	1 cut(s)	879
BtsIMutI	CAGTG	3 cut(s)	375, 410, 879
Cac8I	GCNNGC	1 cut(s)	274
CciI	TCATGA	3 cut(s)	252, 475, 969
Cfr10I	RCCGGY	2 cut(s)	272, 434
Cfr13I	GGNCC	1 cut(s)	450
CseI	GACGC	1 cut(s)	265
Csp6I	GTAC	4 cut(s)	93, 142, 500, 524
CspAI	ACCGGT	1 cut(s)	434
CviQI	GTAC	4 cut(s)	93, 142, 500, 524
DdeI	CTNAG	3 cut(s)	227, 643, 1054
DpnI	GATC	4 cut(s)	257, 495, 519, 632
DpnII	GATC	4 cut(s)	255, 493, 517, 630
EaeI	YGGCCR	1 cut(s)	529
Eco130I	CCWWGG	1 cut(s)	356
Eco147I	AGGCCT	1 cut(s)	263
Eco47I	GGWCC	1 cut(s)	450
Eco57I	CTGAAG	1 cut(s)	588
EcoRII	CCWGG	1 cut(s)	762
EcoT14I	CCWWGG	1 cut(s)	356
EcoT22I	ATGCAT	1 cut(s)	319
ErhI	CCWWGG	1 cut(s)	356
Esp3I	CGTCTC	1 cut(s)	479
FaqI	GGGAC	4 cut(s)	756, 861, 913, 1048
FbaI	TGATCA	1 cut(s)	255
FokI	GGATG	1 cut(s)	152
FspBI	CTAG	5 cut(s)	149, 206, 284, 635, 978
GsaI	CCCAGC	2 cut(s)	629, 924
HaeIII	GGCC	2 cut(s)	263, 531
HapII	CCGG	2 cut(s)	273, 435
HgaI	GACGC	1 cut(s)	265
Hin1I	GRCGYC	1 cut(s)	276
HincII	GTYRAC	1 cut(s)	949
HindII	GTYRAC	1 cut(s)	949
HinfI	GANTC	4 cut(s)	101, 422, 550, 1000
HpaII	CCGG	2 cut(s)	273, 435
HphI	GGTGA	2 cut(s)	327, 503
Hpy166II	GTNNAC	5 cut(s)	6, 500, 640, 862, 949
Hpy188I	TCNGA	4 cut(s)	106, 447, 568, 586
Hpy188III	TCNNGA	4 cut(s)	253, 476, 595, 970
Hpy8I	GTNNAC	5 cut(s)	6, 500, 640, 862, 949
HpyAV	CCTTC	3 cut(s)	274, 382, 890
HpyCH4III	ACNGT	3 cut(s)	92, 602, 859
HpyCH4V	TGCA	9 cut(s)	134, 317, 512, 756, 788, 803, 836, 917, 985
HpyF10VI	GCNNNNNNNGC	4 cut(s)	269, 797, 917, 1064
HpyF3I	CTNAG	3 cut(s)	227, 643, 1054
Hsp92I	GRCGYC	1 cut(s)	276
KroI	GCCGGC	1 cut(s)	272
KroNI	GCCGGC	1 cut(s)	274
Ksp22I	TGATCA	1 cut(s)	255
Kzo9I	GATC	4 cut(s)	255, 493, 517, 630
LmnI	GCTCC	3 cut(s)	25, 622, 1010
LweI	GCATC	2 cut(s)	304, 765
MaeI	CTAG	5 cut(s)	149, 206, 284, 635, 978
MaeIII	GTNAC	1 cut(s)	437
MalI	GATC	4 cut(s)	257, 495, 519, 632
MboI	GATC	4 cut(s)	255, 493, 517, 630
MboII	GAAGA	4 cut(s)	238, 241, 581, 1019
MfeI	CAATTG	1 cut(s)	837
MflI	RGATCY	1 cut(s)	630
MhlI	GDGCHC	1 cut(s)	120
MlsI	TGGCCA	1 cut(s)	531
MluNI	TGGCCA	1 cut(s)	531
MlyI	GAGTC	1 cut(s)	559
MmeI	TCCRAC	2 cut(s)	477, 489
MnlI	CCTC	7 cut(s)	34, 100, 343, 441, 708, 727, 824
Mox20I	TGGCCA	1 cut(s)	531
Mph1103I	ATGCAT	1 cut(s)	319
MroNI	GCCGGC	1 cut(s)	272
MscI	TGGCCA	1 cut(s)	531
MseI	TTAA	4 cut(s)	38, 56, 345, 590
MslI	CAYNNNNRTG	4 cut(s)	507, 525, 537, 558
Msp20I	TGGCCA	1 cut(s)	531
MspA1I	CMGCKG	2 cut(s)	920, 962
MspI	CCGG	2 cut(s)	273, 435
MspR9I	CCNGG	1 cut(s)	764
MunI	CAATTG	1 cut(s)	837
MvaI	CCWGG	1 cut(s)	764
MwoI	GCNNNNNNNGC	4 cut(s)	269, 797, 917, 1064
NaeI	GCCGGC	1 cut(s)	274
NcoI	CCATGG	1 cut(s)	356
NdeII	GATC	4 cut(s)	255, 493, 517, 630
NgoMIV	GCCGGC	1 cut(s)	272
NlaIV	GGNNCC	3 cut(s)	154, 599, 632
NsiI	ATGCAT	1 cut(s)	319
NspI	RCATGY	3 cut(s)	37, 99, 542
PagI	TCATGA	3 cut(s)	252, 475, 969
PceI	AGGCCT	1 cut(s)	263
PciI	ACATGT	2 cut(s)	33, 95
PcsI	WCGNNNNNNNCGW	1 cut(s)	273
PdiI	GCCGGC	1 cut(s)	274
PfeI	GAWTC	3 cut(s)	101, 422, 1000
PinAI	ACCGGT	1 cut(s)	434
PleI	GAGTC	1 cut(s)	558
PpsI	GAGTC	1 cut(s)	558
PscI	ACATGT	2 cut(s)	33, 95
PshBI	ATTAAT	1 cut(s)	590
PsiI	TTATAA	1 cut(s)	650
Psp6I	CCWGG	1 cut(s)	762
PspFI	CCCAGC	2 cut(s)	625, 920
PspGI	CCWGG	1 cut(s)	762
PspN4I	GGNNCC	3 cut(s)	154, 599, 632
PspPI	GGNCC	1 cut(s)	450
PstI	CTGCAG	2 cut(s)	790, 919
PsuI	RGATCY	1 cut(s)	630
PvuII	CAGCTG	2 cut(s)	920, 962
RsaI	GTAC	4 cut(s)	94, 143, 501, 525
RsaNI	GTAC	4 cut(s)	93, 142, 500, 524
RseI	CAYNNNNRTG	4 cut(s)	507, 525, 537, 558
SaqAI	TTAA	4 cut(s)	38, 56, 345, 590
Sau3AI	GATC	4 cut(s)	255, 493, 517, 630
Sau96I	GGNCC	1 cut(s)	450
SchI	GAGTC	1 cut(s)	559
ScrFI	CCNGG	1 cut(s)	764
SduI	GDGCHC	1 cut(s)	120
SfaNI	GCATC	2 cut(s)	304, 765
SfcI	CTRYAG	2 cut(s)	786, 915
SinI	GGWCC	1 cut(s)	450
SmiMI	CAYNNNNRTG	4 cut(s)	507, 525, 537, 558
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
SseBI	AGGCCT	1 cut(s)	263
SspMI	CTAG	5 cut(s)	149, 206, 284, 635, 978
StuI	AGGCCT	1 cut(s)	263
StyD4I	CCNGG	1 cut(s)	762
StyI	CCWWGG	1 cut(s)	356
TaaI	ACNGT	3 cut(s)	92, 602, 859
TaqII	GACCGA	1 cut(s)	771
TatI	WGTACW	4 cut(s)	92, 141, 499, 523
TfiI	GAWTC	3 cut(s)	101, 422, 1000
Tru1I	TTAA	4 cut(s)	38, 56, 345, 590
Tru9I	TTAA	4 cut(s)	38, 56, 345, 590
TscAI	CASTG	3 cut(s)	382, 417, 886
TspDTI	ATGAA	7 cut(s)	241, 286, 414, 464, 492, 958, 986
TspRI	CASTG	3 cut(s)	382, 417, 886
VpaK11BI	GGWCC	1 cut(s)	450
VspI	ATTAAT	1 cut(s)	590
XapI	RAATTY	2 cut(s)	365, 770
XceI	RCATGY	3 cut(s)	37, 99, 542
XspI	CTAG	5 cut(s)	149, 206, 284, 635, 978
Zsp2I	ATGCAT	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.