Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002306

Physical Location & Seq

Genomic Coordinates Reverse (-)

19100370 .. 19101779

Gene Structure 1410 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G015360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGTTTATTCTTCAAGCTTCATCTTTGAACATGTTAAAGATAGTGGCATCAATTCTAATTCTTCTATTCCCCGCAATAGTATTTGGAGAGTGTACCTGTGAATCTGAAGACATACAGGACAACAACGATGAAGCACTAAAGTACAAGCTAGGCTCCATTGCTTCAATTCTTGTTTCGGGTGCTTTGGGGGTAAAACGATATCTTCTTCTTTGTCAAGGCCTTTGCGGCTGGGTGATTCTAGCGACTGCCTTCATTCACATACTACCTGAAGCCTTTGAGACCTTGACTTCACCATGCCTAAAAGAAAATCCATGGGGCAGATTCCCTTTCACAGGCTTTGTGTGTATGATGTCTGCCATCGGAACATTGATGGTTGATACAGTGGCAACTGGGTACTACAAAAGGTCAAGCTTGAAGTCAACCCAGGTGACAATGGATGTAGAGAACATAGCTGGTCATGCAGGTCATGTACATCATACTGTTCATACACATGGTGCCACACAGGGTAGTAATGCTCATGGCTCTGAAGAATTGAGATCATCATCAGAATTAATCAGGCATAGAGTCATTTCACAAGTGTTGGAGCTGGGGATTCTAGTCCATTCAGTTATAATTGGAATAACATTGGGTGCATCCCGAAACCCAGATACAATAAAGCCTCTCCTGGTGGCTTTGTCTTTCCATCAATTCTTTGAGGGCATCGGACTTGGTGGCTGCATCTCTCAGGCAAAGTTTAAGGTTCGGTCTGCAGCCATAATGGCGGCATTTTTCTCCCTTACAACCCCCATTGGGATTGCAGTTGGTACCGGAATTTCAAGCGTTTACAGTGAGACTAGCCCAACTGCTCTAATTGTTCAAGGGACTTTGGATTCAGCTGCAGCTGGGATTTTAATTTACATGGCTCTTGTTGACCTACTTGCAGCAGATTTCATGAGCCCTAGAATGCAAGGAAATATGAGGATTCAATTGGGGTCATATATCTCACTTCTTCTAGGGACTGGCTGTATGTCTCTCTTGGCGAAATGGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0071944 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

343

Amino Acids

36.64

Weight (kDa)

6.59

Isoelectric Point (pI)

37.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	68 - 340	3.9e-70	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12750
fragaria_vesca	FvH4_3g12900 FvH4_3g14490 FvH4_3g14490
malus_domestica	MD05G1236500.v1.1 MD05G1236600.v1.1 MD05G1247200.v1.1 MD10G1227800.v1.1
prunus_persica	Prupe.4G117200_v2.0.a1 Prupe.4G129600_v2.0.a1 Prupe.4G129700_v2.0.a1
pyrus_communis	pycom05g21350 pycom05g22310 pycom10g19130
rosa_chinensis	RchiOBHm_Chr5g0021001 RchiOBHm_Chr5g0023861 RchiOBHm_Chr5g0023871
rosa_laevigata	RLG00000032576 RLG00000032741 RLG00000032742
rosa_multiflora	Rmu_sc0001372.1_g000002 Rmu_sc0001372.1_g000005 Rmu_ssc0000027.1_g000003 Rmu_ssc0000244.1_g000011
rosa_roxburghii	Rroxscaffold_1G00055380 Rroxscaffold_1G00057480
rosa_rugosa	Rorug05G0063700 Rorug05G0079800 Rorug05G0079900
rosa_samantha	Rh5AG153300 Rh5AG169900 Rh5AG170000 Rh5BG153000 Rh5BG167200 Rh5BG167300 Rh5CG165600 Rh5CG182800 Rh5DG152400 Rh5DG169300
rosa_wichuraiana	Rw5G013620 Rw5G015360 Rw5G015370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	611
Acc36I	ACCTGC	1 cut(s)	452
Acc65I	GGTACC	1 cut(s)	803
AccB1I	GGYRCC	2 cut(s)	494, 803
AciI	CCGC	3 cut(s)	72, 225, 761
AcsI	RAATTY	1 cut(s)	810
AcuI	CTGAAG	3 cut(s)	126, 288, 546
AdeI	CACNNNGTG	1 cut(s)	494
AfaI	GTAC	5 cut(s)	94, 143, 395, 471, 805
AfiI	CCNNNNNNNGG	2 cut(s)	332, 789
AflIII	ACRYGT	1 cut(s)	30
AgsI	TTSAA	7 cut(s)	14, 28, 165, 415, 816, 857, 965
AjnI	CCWGG	2 cut(s)	423, 663
AluBI	AGCT	7 cut(s)	17, 148, 411, 452, 586, 875, 881
AluI	AGCT	7 cut(s)	17, 148, 411, 452, 586, 875, 881
Alw26I	GTCTC	3 cut(s)	272, 824, 1014
AoxI	GGCC	1 cut(s)	217
ApeKI	GCWGC	5 cut(s)	714, 749, 875, 878, 920
ApoI	RAATTY	1 cut(s)	810
AseI	ATTAAT	1 cut(s)	551
Asp718I	GGTACC	1 cut(s)	803
AsuHPI	GGTGA	3 cut(s)	244, 282, 439
BanI	GGYRCC	2 cut(s)	494, 803
BanII	GRGCYC	1 cut(s)	938
BbsI	GAAGAC	1 cut(s)	114
BbvI	GCAGC	5 cut(s)	701, 761, 862, 890, 932
BccI	CCATC	3 cut(s)	364, 365, 690
BciT130I	CCWGG	2 cut(s)	425, 665
BcoDI	GTCTC	3 cut(s)	272, 824, 1014
BfaI	CTAG	6 cut(s)	149, 239, 596, 834, 939, 992
BfmI	CTRYAG	2 cut(s)	747, 876
BfuAI	ACCTGC	1 cut(s)	452
BglI	GCCNNNNNGGC	2 cut(s)	225, 758
BisI	GCNGC	7 cut(s)	226, 715, 750, 762, 876, 879, 921
BlsI	GCNGC	7 cut(s)	227, 716, 751, 763, 877, 880, 922
Bme1390I	CCNGG	2 cut(s)	425, 665
BmiI	GGNNCC	3 cut(s)	154, 496, 805
BmrFI	CCNGG	2 cut(s)	425, 665
BmrI	ACTGGG	1 cut(s)	399
BmsI	GCATC	4 cut(s)	56, 641, 708, 726
BmuI	ACTGGG	1 cut(s)	399
BpiI	GAAGAC	1 cut(s)	114
BsaBI	GATNNNNATC	1 cut(s)	541
BsaI	GGTCTC	1 cut(s)	272
BsaJI	CCNNGG	2 cut(s)	311, 423
BsaWI	WCCGGW	1 cut(s)	806
Bsc4I	CCNNNNNNNGG	2 cut(s)	332, 789
Bse1I	ACTGG	2 cut(s)	394, 1003
Bse3DI	GCAATG	1 cut(s)	156
Bse8I	GATNNNNATC	1 cut(s)	541
BseBI	CCWGG	2 cut(s)	425, 665
BseDI	CCNNGG	2 cut(s)	311, 423
BseGI	GGATG	2 cut(s)	442, 632
BseJI	GATNNNNATC	1 cut(s)	541
BseLI	CCNNNNNNNGG	2 cut(s)	332, 789
BseMI	GCAATG	1 cut(s)	156
BseMII	CTCAG	1 cut(s)	737
BseNI	ACTGG	2 cut(s)	394, 1003
BseXI	GCAGC	5 cut(s)	701, 761, 862, 890, 932
BseYI	CCCAGC	3 cut(s)	228, 586, 881
BshFI	GGCC	1 cut(s)	219
BshNI	GGYRCC	2 cut(s)	494, 803
BsiSI	CCGG	1 cut(s)	807
BslFI	GGGAC	2 cut(s)	874, 1009
BslI	CCNNNNNNNGG	2 cut(s)	332, 789
BsmAI	GTCTC	3 cut(s)	272, 824, 1014
BsmFI	GGGAC	2 cut(s)	874, 1009
BsmI	GAATGC	1 cut(s)	948
BsnI	GGCC	1 cut(s)	219
Bso31I	GGTCTC	1 cut(s)	272
Bsp1286I	GDGCHC	1 cut(s)	938
Bsp1407I	TGTACA	1 cut(s)	469
Bsp143I	GATC	1 cut(s)	536
Bsp19I	CCATGG	1 cut(s)	311
BspACI	CCGC	3 cut(s)	72, 225, 761
BspANI	GGCC	1 cut(s)	219
BspCNI	CTCAG	1 cut(s)	736
BspHI	TCATGA	1 cut(s)	930
BspLI	GGNNCC	3 cut(s)	154, 496, 805
BspMAI	CTGCAG	2 cut(s)	751, 880
BspMI	ACCTGC	1 cut(s)	452
BspT107I	GGYRCC	2 cut(s)	494, 803
BspTNI	GGTCTC	1 cut(s)	272
BsrDI	GCAATG	1 cut(s)	156
BsrGI	TGTACA	1 cut(s)	469
BsrI	ACTGG	2 cut(s)	394, 1003
BssECI	CCNNGG	2 cut(s)	311, 423
BssMI	GATC	1 cut(s)	536
BssT1I	CCWWGG	1 cut(s)	311
Bst2UI	CCWGG	2 cut(s)	425, 665
Bst4CI	ACNGT	3 cut(s)	382, 481, 827
BstAUI	TGTACA	1 cut(s)	469
BstDEI	CTNAG	1 cut(s)	723
BstDSI	CCRYGG	1 cut(s)	311
BstENI	CCTNNNNNAGG	1 cut(s)	330
BstF5I	GGATG	2 cut(s)	442, 632
BstKTI	GATC	1 cut(s)	539
BstMAI	GTCTC	3 cut(s)	272, 824, 1014
BstMBI	GATC	1 cut(s)	536
BstMWI	GCNNNNNNNGC	4 cut(s)	225, 458, 758, 1025
BstNI	CCWGG	2 cut(s)	425, 665
BstNSI	RCATGY	1 cut(s)	34
BstSCI	CCNGG	2 cut(s)	423, 663
BstSFI	CTRYAG	2 cut(s)	747, 876
BstV1I	GCAGC	5 cut(s)	701, 761, 862, 890, 932
BstV2I	GAAGAC	1 cut(s)	114
BsuRI	GGCC	1 cut(s)	219
BtgI	CCRYGG	1 cut(s)	311
BtsCI	GGATG	2 cut(s)	442, 632
BtsIMutI	CAGTG	2 cut(s)	387, 832
BveI	ACCTGC	1 cut(s)	452
CciI	TCATGA	1 cut(s)	930
Csp6I	GTAC	5 cut(s)	93, 142, 394, 470, 804
CviAII	CATG	9 cut(s)	31, 294, 312, 458, 467, 491, 518, 898, 931
CviQI	GTAC	5 cut(s)	93, 142, 394, 470, 804
DdeI	CTNAG	1 cut(s)	723
DpnI	GATC	1 cut(s)	538
DpnII	GATC	1 cut(s)	536
DraIII	CACNNNGTG	1 cut(s)	494
Eco130I	CCWWGG	1 cut(s)	311
Eco147I	AGGCCT	1 cut(s)	219
Eco24I	GRGCYC	1 cut(s)	938
Eco31I	GGTCTC	1 cut(s)	272
Eco32I	GATATC	1 cut(s)	200
Eco57I	CTGAAG	3 cut(s)	126, 288, 546
EcoNI	CCTNNNNNAGG	1 cut(s)	330
EcoRII	CCWGG	2 cut(s)	423, 663
EcoRV	GATATC	1 cut(s)	200
EcoT14I	CCWWGG	1 cut(s)	311
EcoT38I	GRGCYC	1 cut(s)	938
ErhI	CCWWGG	1 cut(s)	311
FaeI	CATG	9 cut(s)	34, 297, 315, 461, 470, 494, 521, 901, 934
FaqI	GGGAC	2 cut(s)	874, 1009
FatI	CATG	9 cut(s)	30, 293, 311, 457, 466, 490, 517, 897, 930
FauI	CCCGC	1 cut(s)	79
Fnu4HI	GCNGC	7 cut(s)	226, 715, 750, 762, 876, 879, 921
FokI	GGATG	2 cut(s)	449, 619
FriOI	GRGCYC	1 cut(s)	938
Fsp4HI	GCNGC	7 cut(s)	226, 715, 750, 762, 876, 879, 921
FspBI	CTAG	6 cut(s)	149, 239, 596, 834, 939, 992
GluI	GCNGC	7 cut(s)	226, 715, 750, 762, 876, 879, 921
GsaI	CCCAGC	3 cut(s)	232, 590, 885
HaeIII	GGCC	1 cut(s)	219
HapII	CCGG	1 cut(s)	807
Hin1II	CATG	9 cut(s)	34, 297, 315, 461, 470, 494, 521, 901, 934
HincII	GTYRAC	2 cut(s)	420, 910
HindII	GTYRAC	2 cut(s)	420, 910
HindIII	AAGCTT	2 cut(s)	15, 409
HinfI	GANTC	7 cut(s)	101, 235, 321, 564, 592, 869, 961
HpaII	CCGG	1 cut(s)	807
HphI	GGTGA	3 cut(s)	244, 282, 439
Hpy166II	GTNNAC	4 cut(s)	93, 420, 823, 910
Hpy188I	TCNGA	5 cut(s)	106, 362, 526, 547, 704
Hpy188III	TCNNGA	2 cut(s)	636, 931
Hpy8I	GTNNAC	4 cut(s)	93, 420, 823, 910
HpyAV	CCTTC	1 cut(s)	259
HpyCH4III	ACNGT	3 cut(s)	382, 481, 827
HpyCH4V	TGCA	8 cut(s)	461, 632, 717, 749, 797, 878, 920, 946
HpyF10VI	GCNNNNNNNGC	4 cut(s)	225, 458, 758, 1025
HpyF3I	CTNAG	1 cut(s)	723
Hsp92II	CATG	9 cut(s)	34, 297, 315, 461, 470, 494, 521, 901, 934
KpnI	GGTACC	1 cut(s)	807
Kzo9I	GATC	1 cut(s)	536
LmnI	GCTCC	2 cut(s)	158, 583
Lsp1109I	GCAGC	5 cut(s)	701, 761, 862, 890, 932
LweI	GCATC	4 cut(s)	56, 641, 708, 726
MaeI	CTAG	6 cut(s)	149, 239, 596, 834, 939, 992
MaeIII	GTNAC	1 cut(s)	427
MalI	GATC	1 cut(s)	538
MboI	GATC	1 cut(s)	536
MboII	GAAGA	6 cut(s)	53, 119, 194, 197, 539, 980
MfeI	CAATTG	1 cut(s)	965
MhlI	GDGCHC	1 cut(s)	938
MlyI	GAGTC	1 cut(s)	573
MmeI	TCCRAC	1 cut(s)	561
MnlI	CCTC	3 cut(s)	669, 688, 951
MseI	TTAA	4 cut(s)	35, 551, 735, 890
MslI	CAYNNNNRTG	1 cut(s)	489
MspA1I	CMGCKG	2 cut(s)	875, 881
MspI	CCGG	1 cut(s)	807
MspR9I	CCNGG	2 cut(s)	425, 665
MunI	CAATTG	1 cut(s)	965
Mva1269I	GAATGC	1 cut(s)	948
MvaI	CCWGG	2 cut(s)	425, 665
MwoI	GCNNNNNNNGC	4 cut(s)	225, 458, 758, 1025
NcoI	CCATGG	1 cut(s)	311
NdeII	GATC	1 cut(s)	536
NlaIII	CATG	9 cut(s)	34, 297, 315, 461, 470, 494, 521, 901, 934
NlaIV	GGNNCC	3 cut(s)	154, 496, 805
NmuCI	GTSAC	1 cut(s)	427
NspI	RCATGY	1 cut(s)	34
PagI	TCATGA	1 cut(s)	930
PceI	AGGCCT	1 cut(s)	219
PciI	ACATGT	1 cut(s)	30
PctI	GAATGC	1 cut(s)	948
PfeI	GAWTC	6 cut(s)	101, 235, 321, 592, 869, 961
PkrI	GCNGC	7 cut(s)	227, 716, 751, 763, 877, 880, 922
PleI	GAGTC	1 cut(s)	572
PpsI	GAGTC	1 cut(s)	572
PscI	ACATGT	1 cut(s)	30
PshBI	ATTAAT	1 cut(s)	551
PsiI	TTATAA	1 cut(s)	611
Psp6I	CCWGG	2 cut(s)	423, 663
PspFI	CCCAGC	3 cut(s)	228, 586, 881
PspGI	CCWGG	2 cut(s)	423, 663
PspN4I	GGNNCC	3 cut(s)	154, 496, 805
PstI	CTGCAG	2 cut(s)	751, 880
PvuII	CAGCTG	2 cut(s)	875, 881
RsaI	GTAC	5 cut(s)	94, 143, 395, 471, 805
RsaNI	GTAC	5 cut(s)	93, 142, 394, 470, 804
RseI	CAYNNNNRTG	1 cut(s)	489
SaqAI	TTAA	4 cut(s)	35, 551, 735, 890
SatI	GCNGC	7 cut(s)	226, 715, 750, 762, 876, 879, 921
Sau3AI	GATC	1 cut(s)	536
SchI	GAGTC	1 cut(s)	573
ScrFI	CCNGG	2 cut(s)	425, 665
SduI	GDGCHC	1 cut(s)	938
SfaNI	GCATC	4 cut(s)	56, 641, 708, 726
SfcI	CTRYAG	2 cut(s)	747, 876
SmiMI	CAYNNNNRTG	1 cut(s)	489
SseBI	AGGCCT	1 cut(s)	219
SsiI	CCGC	3 cut(s)	72, 225, 761
SspMI	CTAG	6 cut(s)	149, 239, 596, 834, 939, 992
StuI	AGGCCT	1 cut(s)	219
StyD4I	CCNGG	2 cut(s)	423, 663
StyI	CCWWGG	1 cut(s)	311
TaaI	ACNGT	3 cut(s)	382, 481, 827
TaqII	GACCGA	1 cut(s)	732
TatI	WGTACW	2 cut(s)	141, 469
TauI	GCSGC	2 cut(s)	228, 764
TfiI	GAWTC	6 cut(s)	101, 235, 321, 592, 869, 961
Tru1I	TTAA	4 cut(s)	35, 551, 735, 890
Tru9I	TTAA	4 cut(s)	35, 551, 735, 890
TscAI	CASTG	2 cut(s)	387, 832
TseFI	GTSAC	1 cut(s)	427
TseI	GCWGC	5 cut(s)	714, 749, 875, 878, 920
Tsp45I	GTSAC	1 cut(s)	427
TspDTI	ATGAA	5 cut(s)	9, 144, 241, 473, 919
TspRI	CASTG	2 cut(s)	387, 832
VspI	ATTAAT	1 cut(s)	551
XagI	CCTNNNNNAGG	1 cut(s)	330
XapI	RAATTY	1 cut(s)	810
XceI	RCATGY	1 cut(s)	34
XspI	CTAG	6 cut(s)	149, 239, 596, 834, 939, 992

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.