Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0002306

Physical Location & Seq

Genomic Coordinates Reverse (-)

32454796 .. 32458405

Gene Structure 3610 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1227800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGAAAAAGCTCACTCCAACTCACACACTTCCTCTTCCTCTTCTCCTTCTCCTTCTTTTTGTCCCCATCTCGGTTTCCGCCGAATGTGAATGCAATTCGGAAACCCTAGACCATGACAAGTTCAAAGTCCTCAAGTTCAAGCTACTTGCGATAAGTTCAATCCTCATAGCAAGTTTCCTTGGTGTCTCCCTTCCAATGTTGGGCAAGAAAATTCCGGCTCTAAACCCCGAAAACGACATCTTCTTCGTGATCAAGGCTTTTGCGGCCGGTGTGATTCTAGCAACAGGGTTCATCCACGTGCTACCGGATGCTTTTGAGAGCTTGAGAAGCCCTTGCCTCAGCGAAACCCCGTGGGGCAGCTTCCCGTTTACCGGCTTCATTGCCATGCTTTCGGCGATTGGGACGATGATGATCGACACCTTTGCCACCAGCTACTATAGAAGATCAGATTTCACCAAAGCACTGCCAGTGAAGGAGGATGAAGAGATGAATGGGTTGCACGAGGGTCATGTGCATGTTCACACACATGCCACACACGGCCATGCTCACGGTTCTGGCGCGATTGCACCAGAGGATTCGATTTCTTCTTTCGAAATTGTTAGGCATCGAGTGATATCACAGGTTCTGGAGCTGGGAATTTTGGTTCATTCAGTAATTATTGGGATATCTTTAGGTGCCTCACAGAGTCCCAAGACAATCAAACCTCTTGTAGCAGCTCTTACTTTCCATCAATTTTTCGAAGGCATGGGCCTTGGTGGGTGCATAACTCAGGCCAACTTTAAGTCCAGGGCCATTGCAGCAATGGTGCTTTTCTTCTCCTTCACAACCCCAATTGGAATTGGTGTTGGAATGGGAATATCAAACATTTACAACGAGACCAGCCCAAGTGCTCTAATCGTGGAAGGAGTTTTCAACTCTGCATCAGCTGGGATCCTAATATACATGGCTCTGGTTGACCTACTAGCAGCAGATTTTATGAACCCTAGAATGCAGAGCAATCTAAGGATCCAGGTTGGGGCTAATATCTCACTTCTTCTGGGCTCTGGATGTATGTCCCTCTTGGCCAAATGGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0071944 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

359

Amino Acids

38.48

Weight (kDa)

6.52

Isoelectric Point (pI)

35.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	45 - 355	1.6e-81	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12750
fragaria_vesca	FvH4_3g12900 FvH4_3g14490 FvH4_3g14490
malus_domestica	MD05G1236500.v1.1 MD05G1236600.v1.1 MD05G1247200.v1.1 MD10G1227800.v1.1
prunus_persica	Prupe.4G117200_v2.0.a1 Prupe.4G129600_v2.0.a1 Prupe.4G129700_v2.0.a1
pyrus_communis	pycom05g21350 pycom05g22310 pycom10g19130
rosa_chinensis	RchiOBHm_Chr5g0021001 RchiOBHm_Chr5g0023861 RchiOBHm_Chr5g0023871
rosa_laevigata	RLG00000032576 RLG00000032741 RLG00000032742
rosa_multiflora	Rmu_sc0001372.1_g000002 Rmu_sc0001372.1_g000005 Rmu_ssc0000027.1_g000003 Rmu_ssc0000244.1_g000011
rosa_roxburghii	Rroxscaffold_1G00055380 Rroxscaffold_1G00057480
rosa_rugosa	Rorug05G0063700 Rorug05G0079800 Rorug05G0079900
rosa_samantha	Rh5AG153300 Rh5AG169900 Rh5AG170000 Rh5BG153000 Rh5BG167200 Rh5BG167300 Rh5CG165600 Rh5CG182800 Rh5DG152400 Rh5DG169300
rosa_wichuraiana	Rw5G013620 Rw5G015360 Rw5G015370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	674
AccII	CGCG	1 cut(s)	560
AciI	CCGC	2 cut(s)	78, 263
AclWI	GGATC	4 cut(s)	925, 938, 1000, 1013
AcoI	YGGCCR	3 cut(s)	264, 538, 1062
AcsI	RAATTY	2 cut(s)	210, 636
AcvI	CACGTG	1 cut(s)	298
AfiI	CCNNNNNNNGG	4 cut(s)	70, 200, 371, 1015
AgsI	TTSAA	4 cut(s)	124, 139, 159, 913
AjnI	CCWGG	2 cut(s)	785, 1008
AloI	GAACNNNNNNTCC	2 cut(s)	627, 659
AluBI	AGCT	8 cut(s)	10, 142, 321, 360, 432, 631, 716, 926
AluI	AGCT	8 cut(s)	10, 142, 321, 360, 432, 631, 716, 926
Alw21I	GWGCWC	1 cut(s)	892
Alw26I	GTCTC	2 cut(s)	190, 869
AlwI	GGATC	4 cut(s)	925, 938, 1000, 1013
AlwNI	CAGNNNCTG	1 cut(s)	625
AoxI	GGCC	6 cut(s)	264, 538, 748, 771, 789, 1062
ApeKI	GCWGC	4 cut(s)	357, 713, 797, 965
ApoI	RAATTY	2 cut(s)	210, 636
ArsI	GACNNNNNNTTYG	2 cut(s)	227, 259
AspLEI	GCGC	1 cut(s)	560
AspS9I	GGNCC	2 cut(s)	748, 789
AsuHPI	GGTGA	1 cut(s)	445
AsuII	TTCGAA	2 cut(s)	591, 738
BalI	TGGCCA	1 cut(s)	1064
BamHI	GGATCC	2 cut(s)	930, 1005
BanI	GGYRCC	1 cut(s)	674
BanII	GRGCYC	1 cut(s)	1043
BauI	CACGAG	1 cut(s)	500
BbrPI	CACGTG	1 cut(s)	298
Bbv12I	GWGCWC	1 cut(s)	892
BbvCI	CCTCAGC	1 cut(s)	338
BbvI	GCAGC	4 cut(s)	369, 725, 809, 977
BccI	CCATC	2 cut(s)	74, 735
BceAI	ACGGC	1 cut(s)	553
BcgI	CGANNNNNNTGC	2 cut(s)	404, 438
BciT130I	CCWGG	2 cut(s)	787, 1010
BclI	TGATCA	1 cut(s)	249
BcoDI	GTCTC	2 cut(s)	190, 869
BfaI	CTAG	4 cut(s)	107, 278, 962, 984
BfmI	CTRYAG	1 cut(s)	436
BglI	GCCNNNNNGGC	1 cut(s)	1070
BisI	GCNGC	5 cut(s)	264, 358, 714, 798, 966
BlsI	GCNGC	5 cut(s)	265, 359, 715, 799, 967
Bme1390I	CCNGG	2 cut(s)	787, 1010
BmgT120I	GGNCC	2 cut(s)	748, 789
BmiI	GGNNCC	3 cut(s)	676, 932, 1007
BmrFI	CCNGG	2 cut(s)	787, 1010
BmsI	GCATC	3 cut(s)	298, 613, 929
BpmI	CTGGAG	1 cut(s)	647
Bpu10I	CCTNAGC	1 cut(s)	338
Bpu14I	TTCGAA	2 cut(s)	591, 738
BpuEI	CTTGAG	2 cut(s)	116, 343
BsaAI	YACGTR	1 cut(s)	298
BsaBI	GATNNNNATC	1 cut(s)	410
BsaI	GGTCTC	1 cut(s)	869
BsaJI	CCNNGG	4 cut(s)	178, 350, 751, 786
BsaWI	WCCGGW	1 cut(s)	304
Bsc4I	CCNNNNNNNGG	4 cut(s)	70, 200, 371, 1015
Bse118I	RCCGGY	2 cut(s)	266, 371
Bse1I	ACTGG	1 cut(s)	467
Bse3DI	GCAATG	3 cut(s)	378, 792, 807
Bse8I	GATNNNNATC	1 cut(s)	410
BseBI	CCWGG	2 cut(s)	787, 1010
BseDI	CCNNGG	4 cut(s)	178, 350, 751, 786
BseGI	GGATG	4 cut(s)	291, 313, 484, 1052
BseJI	GATNNNNATC	1 cut(s)	410
BseLI	CCNNNNNNNGG	4 cut(s)	70, 200, 371, 1015
BseMI	GCAATG	3 cut(s)	378, 792, 807
BseMII	CTCAG	2 cut(s)	352, 782
BseNI	ACTGG	1 cut(s)	467
BseX3I	CGGCCG	1 cut(s)	264
BseXI	GCAGC	4 cut(s)	369, 725, 809, 977
BseYI	CCCAGC	2 cut(s)	631, 926
Bsh1236I	CGCG	1 cut(s)	560
Bsh1285I	CGRYCG	1 cut(s)	267
BshFI	GGCC	6 cut(s)	266, 540, 750, 773, 791, 1064
BshNI	GGYRCC	1 cut(s)	674
BsiEI	CGRYCG	1 cut(s)	267
BsiHKAI	GWGCWC	1 cut(s)	892
BsiSI	CCGG	4 cut(s)	215, 267, 305, 372
BslFI	GGGAC	4 cut(s)	47, 415, 672, 1039
BslI	CCNNNNNNNGG	4 cut(s)	70, 200, 371, 1015
BsmAI	GTCTC	2 cut(s)	190, 869
BsmFI	GGGAC	4 cut(s)	47, 415, 672, 1039
BsmI	GAATGC	2 cut(s)	95, 993
BsnI	GGCC	6 cut(s)	266, 540, 750, 773, 791, 1064
Bso31I	GGTCTC	1 cut(s)	869
Bsp119I	TTCGAA	2 cut(s)	591, 738
Bsp1286I	GDGCHC	2 cut(s)	892, 1043
Bsp143I	GATC	5 cut(s)	249, 411, 443, 930, 1005
BspACI	CCGC	2 cut(s)	78, 263
BspANI	GGCC	6 cut(s)	266, 540, 750, 773, 791, 1064
BspCNI	CTCAG	2 cut(s)	351, 781
BspFNI	CGCG	1 cut(s)	560
BspLI	GGNNCC	3 cut(s)	676, 932, 1007
BspPI	GGATC	4 cut(s)	925, 938, 1000, 1013
BspT104I	TTCGAA	2 cut(s)	591, 738
BspT107I	GGYRCC	1 cut(s)	674
BspTNI	GGTCTC	1 cut(s)	869
BsrDI	GCAATG	3 cut(s)	378, 792, 807
BsrFI	RCCGGY	2 cut(s)	266, 371
BsrI	ACTGG	1 cut(s)	467
BssAI	RCCGGY	2 cut(s)	266, 371
BssECI	CCNNGG	4 cut(s)	178, 350, 751, 786
BssMI	GATC	5 cut(s)	249, 411, 443, 930, 1005
BssSI	CACGAG	1 cut(s)	500
BssT1I	CCWWGG	2 cut(s)	178, 751
Bst2BI	CACGAG	1 cut(s)	500
Bst2UI	CCWGG	2 cut(s)	787, 1010
Bst4CI	ACNGT	1 cut(s)	551
Bst6I	CTCTTC	3 cut(s)	39, 45, 477
BstBAI	YACGTR	1 cut(s)	298
BstBI	TTCGAA	2 cut(s)	591, 738
BstDEI	CTNAG	3 cut(s)	338, 768, 1001
BstDSI	CCRYGG	1 cut(s)	350
BstF5I	GGATG	4 cut(s)	291, 313, 484, 1052
BstFNI	CGCG	1 cut(s)	560
BstHHI	GCGC	1 cut(s)	560
BstKTI	GATC	5 cut(s)	252, 414, 446, 933, 1008
BstMAI	GTCTC	2 cut(s)	190, 869
BstMBI	GATC	5 cut(s)	249, 411, 443, 930, 1005
BstMCI	CGRYCG	1 cut(s)	267
BstMWI	GCNNNNNNNGC	4 cut(s)	263, 327, 797, 1070
BstNI	CCWGG	2 cut(s)	787, 1010
BstNSI	RCATGY	2 cut(s)	518, 530
BstSCI	CCNGG	2 cut(s)	785, 1008
BstSFI	CTRYAG	1 cut(s)	436
BstUI	CGCG	1 cut(s)	560
BstV1I	GCAGC	4 cut(s)	369, 725, 809, 977
BstX2I	RGATCY	2 cut(s)	930, 1005
BstYI	RGATCY	2 cut(s)	930, 1005
BstZI	CGGCCG	1 cut(s)	264
BsuRI	GGCC	6 cut(s)	266, 540, 750, 773, 791, 1064
BtgI	CCRYGG	1 cut(s)	350
BtsCI	GGATG	4 cut(s)	291, 313, 484, 1052
BtsI	GCAGTG	1 cut(s)	461
BtsIMutI	CAGTG	2 cut(s)	461, 474
CaiI	CAGNNNCTG	1 cut(s)	625
CfoI	GCGC	1 cut(s)	560
Cfr10I	RCCGGY	2 cut(s)	266, 371
Cfr13I	GGNCC	2 cut(s)	748, 789
CviAII	CATG	8 cut(s)	113, 385, 509, 515, 527, 542, 745, 943
DdeI	CTNAG	3 cut(s)	338, 768, 1001
DpnI	GATC	5 cut(s)	251, 413, 445, 932, 1007
DpnII	GATC	5 cut(s)	249, 411, 443, 930, 1005
EaeI	YGGCCR	3 cut(s)	264, 538, 1062
EagI	CGGCCG	1 cut(s)	264
Eam1104I	CTCTTC	3 cut(s)	39, 45, 477
EarI	CTCTTC	3 cut(s)	39, 45, 477
EciI	GGCGGA	1 cut(s)	67
EclXI	CGGCCG	1 cut(s)	264
Eco130I	CCWWGG	2 cut(s)	178, 751
Eco24I	GRGCYC	1 cut(s)	1043
Eco31I	GGTCTC	1 cut(s)	869
Eco32I	GATATC	2 cut(s)	615, 666
Eco52I	CGGCCG	1 cut(s)	264
Eco72I	CACGTG	1 cut(s)	298
EcoRII	CCWGG	2 cut(s)	785, 1008
EcoRV	GATATC	2 cut(s)	615, 666
EcoT14I	CCWWGG	2 cut(s)	178, 751
EcoT38I	GRGCYC	1 cut(s)	1043
ErhI	CCWWGG	2 cut(s)	178, 751
FaeI	CATG	8 cut(s)	116, 388, 512, 518, 530, 545, 748, 946
FaqI	GGGAC	4 cut(s)	47, 415, 672, 1039
FatI	CATG	8 cut(s)	112, 384, 508, 514, 526, 541, 744, 942
FbaI	TGATCA	1 cut(s)	249
Fnu4HI	GCNGC	5 cut(s)	264, 358, 714, 798, 966
FokI	GGATG	4 cut(s)	278, 320, 491, 1059
FriOI	GRGCYC	1 cut(s)	1043
Fsp4HI	GCNGC	5 cut(s)	264, 358, 714, 798, 966
FspBI	CTAG	4 cut(s)	107, 278, 962, 984
GlaI	GCGC	1 cut(s)	559
GluI	GCNGC	5 cut(s)	264, 358, 714, 798, 966
GsaI	CCCAGC	2 cut(s)	635, 930
GsuI	CTGGAG	1 cut(s)	647
HaeIII	GGCC	6 cut(s)	266, 540, 750, 773, 791, 1064
HapII	CCGG	4 cut(s)	215, 267, 305, 372
HhaI	GCGC	1 cut(s)	560
Hin1II	CATG	8 cut(s)	116, 388, 512, 518, 530, 545, 748, 946
Hin6I	GCGC	1 cut(s)	558
HinP1I	GCGC	1 cut(s)	558
HincII	GTYRAC	1 cut(s)	955
HindII	GTYRAC	1 cut(s)	955
HinfI	GANTC	3 cut(s)	274, 575, 685
HpaII	CCGG	4 cut(s)	215, 267, 305, 372
HphI	GGTGA	1 cut(s)	445
Hpy166II	GTNNAC	3 cut(s)	369, 520, 955
Hpy188I	TCNGA	2 cut(s)	100, 448
Hpy188III	TCNNGA	3 cut(s)	247, 626, 1044
Hpy8I	GTNNAC	3 cut(s)	369, 520, 955
HpyAV	CCTTC	7 cut(s)	56, 62, 200, 466, 734, 829, 896
HpyCH4III	ACNGT	1 cut(s)	551
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	8 cut(s)	93, 499, 514, 566, 762, 797, 920, 991
HpyF10VI	GCNNNNNNNGC	4 cut(s)	263, 327, 797, 1070
HpyF3I	CTNAG	3 cut(s)	338, 768, 1001
HpySE526I	ACGT	1 cut(s)	297
Hsp92II	CATG	8 cut(s)	116, 388, 512, 518, 530, 545, 748, 946
HspAI	GCGC	1 cut(s)	558
Ksp22I	TGATCA	1 cut(s)	249
Kzo9I	GATC	5 cut(s)	249, 411, 443, 930, 1005
LmnI	GCTCC	1 cut(s)	628
Lsp1109I	GCAGC	4 cut(s)	369, 725, 809, 977
LweI	GCATC	3 cut(s)	298, 613, 929
MaeI	CTAG	4 cut(s)	107, 278, 962, 984
MaeII	ACGT	1 cut(s)	297
MalI	GATC	5 cut(s)	251, 413, 445, 932, 1007
MboI	GATC	5 cut(s)	249, 411, 443, 930, 1005
MboII	GAAGA	9 cut(s)	26, 32, 232, 235, 453, 494, 576, 805, 1025
MfeI	CAATTG	1 cut(s)	831
MflI	RGATCY	2 cut(s)	930, 1005
MhlI	GDGCHC	2 cut(s)	892, 1043
MlsI	TGGCCA	1 cut(s)	1064
MluCI	AATT	8 cut(s)	94, 210, 594, 636, 654, 731, 831, 837
MluNI	TGGCCA	1 cut(s)	1064
MlyI	GAGTC	1 cut(s)	694
MmeI	TCCRAC	2 cut(s)	41, 826
Mox20I	TGGCCA	1 cut(s)	1064
MscI	TGGCCA	1 cut(s)	1064
MseI	TTAA	1 cut(s)	780
MslI	CAYNNNNRTG	5 cut(s)	296, 383, 513, 525, 540
Msp20I	TGGCCA	1 cut(s)	1064
MspA1I	CMGCKG	1 cut(s)	926
MspI	CCGG	4 cut(s)	215, 267, 305, 372
MspR9I	CCNGG	2 cut(s)	787, 1010
MunI	CAATTG	1 cut(s)	831
Mva1269I	GAATGC	2 cut(s)	95, 993
MvaI	CCWGG	2 cut(s)	787, 1010
MvnI	CGCG	1 cut(s)	560
MwoI	GCNNNNNNNGC	4 cut(s)	263, 327, 797, 1070
NdeII	GATC	5 cut(s)	249, 411, 443, 930, 1005
NlaIII	CATG	8 cut(s)	116, 388, 512, 518, 530, 545, 748, 946
NlaIV	GGNNCC	3 cut(s)	676, 932, 1007
NspI	RCATGY	2 cut(s)	518, 530
NspV	TTCGAA	2 cut(s)	591, 738
PctI	GAATGC	2 cut(s)	95, 993
PfeI	GAWTC	2 cut(s)	274, 575
PkrI	GCNGC	5 cut(s)	265, 359, 715, 799, 967
PleI	GAGTC	1 cut(s)	693
PmaCI	CACGTG	1 cut(s)	298
PmlI	CACGTG	1 cut(s)	298
PpsI	GAGTC	1 cut(s)	693
Ppu21I	YACGTR	1 cut(s)	298
Psp6I	CCWGG	2 cut(s)	785, 1008
PspCI	CACGTG	1 cut(s)	298
PspFI	CCCAGC	2 cut(s)	631, 926
PspGI	CCWGG	2 cut(s)	785, 1008
PspN4I	GGNNCC	3 cut(s)	676, 932, 1007
PspPI	GGNCC	2 cut(s)	748, 789
PstNI	CAGNNNCTG	1 cut(s)	625
PsuI	RGATCY	2 cut(s)	930, 1005
PvuII	CAGCTG	1 cut(s)	926
RseI	CAYNNNNRTG	5 cut(s)	296, 383, 513, 525, 540
SaqAI	TTAA	1 cut(s)	780
SatI	GCNGC	5 cut(s)	264, 358, 714, 798, 966
Sau3AI	GATC	5 cut(s)	249, 411, 443, 930, 1005
Sau96I	GGNCC	2 cut(s)	748, 789
SchI	GAGTC	1 cut(s)	694
ScrFI	CCNGG	2 cut(s)	787, 1010
SduI	GDGCHC	2 cut(s)	892, 1043
SfaNI	GCATC	3 cut(s)	298, 613, 929
SfcI	CTRYAG	1 cut(s)	436
SfuI	TTCGAA	2 cut(s)	591, 738
SmiMI	CAYNNNNRTG	5 cut(s)	296, 383, 513, 525, 540
SmlI	CTYRAG	2 cut(s)	131, 322
SmoI	CTYRAG	2 cut(s)	131, 322
Sse9I	AATT	8 cut(s)	94, 210, 594, 636, 654, 731, 831, 837
SsiI	CCGC	2 cut(s)	78, 263
SspMI	CTAG	4 cut(s)	107, 278, 962, 984
StyD4I	CCNGG	2 cut(s)	785, 1008
StyI	CCWWGG	2 cut(s)	178, 751
TaaI	ACNGT	1 cut(s)	551
TaiI	ACGT	1 cut(s)	300
TaqI	TCGA	5 cut(s)	414, 578, 591, 607, 738
TasI	AATT	8 cut(s)	94, 210, 594, 636, 654, 731, 831, 837
TauI	GCSGC	1 cut(s)	266
TfiI	GAWTC	2 cut(s)	274, 575
Tru1I	TTAA	1 cut(s)	780
Tru9I	TTAA	1 cut(s)	780
TscAI	CASTG	2 cut(s)	468, 474
TseI	GCWGC	4 cut(s)	357, 713, 797, 965
TspDTI	ATGAA	7 cut(s)	17, 280, 367, 495, 503, 635, 992
TspRI	CASTG	2 cut(s)	468, 474
XapI	RAATTY	2 cut(s)	210, 636
XceI	RCATGY	2 cut(s)	518, 530
XcmI	CCANNNNNNNNNTGG	1 cut(s)	799
XspI	CTAG	4 cut(s)	107, 278, 962, 984

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.