Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002306

Physical Location & Seq

Genomic Coordinates Reverse (-)

24696750 .. 24699187

Gene Structure 2438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g22310.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGAAAAAGTTCACTCCCGCTTATACTCTTCCTCTTCTCCTCCTCCTTTTTGTCCCCATCTCGGTTTCCGCGGGATGCGAATGCAATTCGGAAACCGTAGACCATGACAAGTTCAAAGTCCTCAAGTTCAAGCTAGTTGCAATAAGTTCAATCCTCATAGCAAGTTTCCTTGGTGTCTCCCTCCCAATGTTGGGCAAGAAAATTCCGGCCCTAAACCCCGAAAATGACATCTTCTTCATGATCAAGGCCTTTGCTGCCGGTGTGATTCTAGCAACAGGTTTCATCCACGTGCTGCCGGACGCTTTTGAGAGCTTGACAAGCCCTTGCCTCAGCGAAACCCCGTGGGGGAACTTCCCCTTTACCGGCTTCATCGCCATGCTTTCGGCGATTGGGACGATGATGATCGATACCTTTGCCACCAGCTATTATAGAAGATCTCATTTCACGAAGCCACTGTCGGTGAACGAGGATGAAGAGATGAATGGGGTGCATGAGGGTCATGTGCATGTTCACACTCATGCCACACACGGCCATGCTCATGGTTCCGGCGTGATTGCGGCGGAGGATTCGATTTCTTCTTTTGAGCTTGTTAGGCATCGAGTGATATCACAGGTTCTGGAGCTGGGAATTTTGGTTCATTCAGTGATTATTGGGATATCTTTAGGTGCCTCACAGAGTCCCAAGACAATCAAACCTCTTGTAGCAGCTCTTACTTTCCATCAATTTTTCGAAGGCATGGGCCTTGGTGGGTGCATAACTCAGGCCAAATTCAAGTACAGGGCCATTGCAACAATGGTGCTTTTCTTCTCCCTCACCACCCCAATTGGAATTGGTGTTGGAATGGGAATATCAAACATTTACAATGATACCAGCCCAACTGCTCTAATTGTGGAAGGAGTCTTCAACTCTGCATCAGCTGGGATCCTAATATACATGGCTCTGGTTGACCTGCTAGCAGCAGATTTTATGAACCCTAGAATGCAGAGCAATCTACGGATCCAGCTTGGGGCTAATGTTTCACTTCTTCTGGGCTGTGGATGCATGTCTCTTTTGGCCAAATGGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0071944 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

356

Amino Acids

38.21

Weight (kDa)

6.69

Isoelectric Point (pI)

26.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12750
fragaria_vesca	FvH4_3g12900 FvH4_3g14490 FvH4_3g14490
malus_domestica	MD05G1236500.v1.1 MD05G1236600.v1.1 MD05G1247200.v1.1 MD10G1227800.v1.1
prunus_persica	Prupe.4G117200_v2.0.a1 Prupe.4G129600_v2.0.a1 Prupe.4G129700_v2.0.a1
pyrus_communis	pycom05g21350 pycom05g22310 pycom10g19130
rosa_chinensis	RchiOBHm_Chr5g0021001 RchiOBHm_Chr5g0023861 RchiOBHm_Chr5g0023871
rosa_laevigata	RLG00000032576 RLG00000032741 RLG00000032742
rosa_multiflora	Rmu_sc0001372.1_g000002 Rmu_sc0001372.1_g000005 Rmu_ssc0000027.1_g000003 Rmu_ssc0000244.1_g000011
rosa_roxburghii	Rroxscaffold_1G00055380 Rroxscaffold_1G00057480
rosa_rugosa	Rorug05G0063700 Rorug05G0079800 Rorug05G0079900
rosa_samantha	Rh5AG153300 Rh5AG169900 Rh5AG170000 Rh5BG153000 Rh5BG167200 Rh5BG167300 Rh5CG165600 Rh5CG182800 Rh5DG152400 Rh5DG169300
rosa_wichuraiana	Rw5G013620 Rw5G015360 Rw5G015370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	957
AccB1I	GGYRCC	1 cut(s)	665
AccI	GTMKAC	1 cut(s)	99
AccII	CGCG	1 cut(s)	71
AciI	CCGC	5 cut(s)	18, 69, 71, 557, 560
AclWI	GGATC	4 cut(s)	916, 929, 991, 1004
AcoI	YGGCCR	2 cut(s)	529, 1053
AcsI	RAATTY	3 cut(s)	201, 627, 767
AcvI	CACGTG	1 cut(s)	289
AfaI	GTAC	1 cut(s)	776
AfiI	CCNNNNNNNGG	6 cut(s)	61, 190, 191, 345, 362, 1006
AgsI	TTSAA	5 cut(s)	115, 130, 150, 772, 904
AloI	GAACNNNNNNTCC	2 cut(s)	618, 650
AluBI	AGCT	8 cut(s)	133, 312, 423, 586, 622, 707, 917, 1003
AluI	AGCT	8 cut(s)	133, 312, 423, 586, 622, 707, 917, 1003
Alw26I	GTCTC	2 cut(s)	181, 1050
AlwI	GGATC	4 cut(s)	916, 929, 991, 1004
AlwNI	CAGNNNCTG	1 cut(s)	616
AoxI	GGCC	8 cut(s)	207, 246, 529, 739, 762, 780, 1053, 1062
ApeKI	GCWGC	4 cut(s)	254, 292, 704, 956
ApoI	RAATTY	3 cut(s)	201, 627, 767
ArsI	GACNNNNNNTTYG	2 cut(s)	440, 472
Asp700I	GAANNNNTTC	1 cut(s)	8
AspS9I	GGNCC	4 cut(s)	208, 739, 780, 1062
AsuHPI	GGTGA	2 cut(s)	472, 805
AsuII	TTCGAA	1 cut(s)	729
AsuNHI	GCTAGC	1 cut(s)	952
BalI	TGGCCA	1 cut(s)	1055
BamHI	GGATCC	2 cut(s)	921, 996
BanI	GGYRCC	1 cut(s)	665
BbrPI	CACGTG	1 cut(s)	289
BbsI	GAAGAC	1 cut(s)	892
BbvCI	CCTCAGC	1 cut(s)	329
BbvI	GCAGC	4 cut(s)	241, 279, 716, 968
BccI	CCATC	2 cut(s)	65, 726
BceAI	ACGGC	1 cut(s)	544
BcgI	CGANNNNNNTGC	2 cut(s)	395, 429
BclI	TGATCA	1 cut(s)	240
BcoDI	GTCTC	2 cut(s)	181, 1050
BfaI	CTAG	4 cut(s)	134, 269, 953, 975
BfuAI	ACCTGC	1 cut(s)	957
BglI	GCCNNNNNGGC	1 cut(s)	1061
BglII	AGATCT	1 cut(s)	434
BisI	GCNGC	5 cut(s)	255, 293, 558, 705, 957
BlsI	GCNGC	5 cut(s)	256, 294, 559, 706, 958
BmgT120I	GGNCC	4 cut(s)	208, 739, 780, 1062
BmiI	GGNNCC	4 cut(s)	544, 667, 923, 998
BmsI	GCATC	4 cut(s)	65, 604, 920, 1028
BmtI	GCTAGC	1 cut(s)	956
BpiI	GAAGAC	1 cut(s)	892
BpmI	CTGGAG	1 cut(s)	638
Bpu10I	CCTNAGC	1 cut(s)	329
Bpu14I	TTCGAA	1 cut(s)	729
BpuEI	CTTGAG	1 cut(s)	107
Bsa29I	ATCGAT	1 cut(s)	405
BsaAI	YACGTR	1 cut(s)	289
BsaBI	GATNNNNATC	1 cut(s)	401
BsaJI	CCNNGG	4 cut(s)	69, 169, 341, 742
Bsc4I	CCNNNNNNNGG	6 cut(s)	61, 190, 191, 345, 362, 1006
Bse118I	RCCGGY	2 cut(s)	257, 362
Bse3DI	GCAATG	1 cut(s)	783
Bse8I	GATNNNNATC	1 cut(s)	401
BseCI	ATCGAT	1 cut(s)	405
BseDI	CCNNGG	4 cut(s)	69, 169, 341, 742
BseGI	GGATG	4 cut(s)	80, 282, 475, 1043
BseJI	GATNNNNATC	1 cut(s)	401
BseLI	CCNNNNNNNGG	6 cut(s)	61, 190, 191, 345, 362, 1006
BseMI	GCAATG	1 cut(s)	783
BseMII	CTCAG	2 cut(s)	343, 773
BseRI	GAGGAG	2 cut(s)	29, 32
BseXI	GCAGC	4 cut(s)	241, 279, 716, 968
BseYI	CCCAGC	2 cut(s)	622, 917
Bsh1236I	CGCG	1 cut(s)	71
BshFI	GGCC	8 cut(s)	209, 248, 531, 741, 764, 782, 1055, 1064
BshNI	GGYRCC	1 cut(s)	665
BshVI	ATCGAT	1 cut(s)	405
BsiSI	CCGG	5 cut(s)	206, 258, 296, 363, 546
BslFI	GGGAC	3 cut(s)	38, 406, 663
BslI	CCNNNNNNNGG	6 cut(s)	61, 190, 191, 345, 362, 1006
BsmAI	GTCTC	2 cut(s)	181, 1050
BsmFI	GGGAC	3 cut(s)	38, 406, 663
BsmI	GAATGC	2 cut(s)	86, 984
BsnI	GGCC	8 cut(s)	209, 248, 531, 741, 764, 782, 1055, 1064
Bsp119I	TTCGAA	1 cut(s)	729
Bsp143I	GATC	5 cut(s)	240, 402, 434, 921, 996
BspACI	CCGC	5 cut(s)	18, 69, 71, 557, 560
BspANI	GGCC	8 cut(s)	209, 248, 531, 741, 764, 782, 1055, 1064
BspCNI	CTCAG	2 cut(s)	342, 772
BspDI	ATCGAT	1 cut(s)	405
BspFNI	CGCG	1 cut(s)	71
BspHI	TCATGA	1 cut(s)	237
BspLI	GGNNCC	4 cut(s)	544, 667, 923, 998
BspMI	ACCTGC	1 cut(s)	957
BspOI	GCTAGC	1 cut(s)	956
BspPI	GGATC	4 cut(s)	916, 929, 991, 1004
BspT104I	TTCGAA	1 cut(s)	729
BspT107I	GGYRCC	1 cut(s)	665
BsrDI	GCAATG	1 cut(s)	783
BsrFI	RCCGGY	2 cut(s)	257, 362
BssAI	RCCGGY	2 cut(s)	257, 362
BssECI	CCNNGG	4 cut(s)	69, 169, 341, 742
BssMI	GATC	5 cut(s)	240, 402, 434, 921, 996
BssT1I	CCWWGG	2 cut(s)	169, 742
Bst4CI	ACNGT	2 cut(s)	97, 456
Bst6I	CTCTTC	3 cut(s)	33, 39, 468
BstBAI	YACGTR	1 cut(s)	289
BstBI	TTCGAA	1 cut(s)	729
BstC8I	GCNNGC	1 cut(s)	954
BstDEI	CTNAG	2 cut(s)	329, 759
BstDSI	CCRYGG	2 cut(s)	69, 341
BstF5I	GGATG	4 cut(s)	80, 282, 475, 1043
BstFNI	CGCG	1 cut(s)	71
BstKTI	GATC	5 cut(s)	243, 405, 437, 924, 999
BstMAI	GTCTC	2 cut(s)	181, 1050
BstMBI	GATC	5 cut(s)	240, 402, 434, 921, 996
BstMWI	GCNNNNNNNGC	5 cut(s)	254, 318, 592, 1038, 1061
BstNSI	RCATGY	2 cut(s)	509, 1045
BstUI	CGCG	1 cut(s)	71
BstV1I	GCAGC	4 cut(s)	241, 279, 716, 968
BstV2I	GAAGAC	1 cut(s)	892
BstX2I	RGATCY	3 cut(s)	434, 921, 996
BstXI	CCANNNNNNTGG	1 cut(s)	539
BstYI	RGATCY	3 cut(s)	434, 921, 996
Bsu15I	ATCGAT	1 cut(s)	405
BsuRI	GGCC	8 cut(s)	209, 248, 531, 741, 764, 782, 1055, 1064
BsuTUI	ATCGAT	1 cut(s)	405
BtgI	CCRYGG	2 cut(s)	69, 341
BtgZI	GCGATG	1 cut(s)	355
BtsCI	GGATG	4 cut(s)	80, 282, 475, 1043
BtsIMutI	CAGTG	2 cut(s)	452, 648
BveI	ACCTGC	1 cut(s)	957
Cac8I	GCNNGC	1 cut(s)	954
CaiI	CAGNNNCTG	1 cut(s)	616
CciI	TCATGA	1 cut(s)	237
Cfr10I	RCCGGY	2 cut(s)	257, 362
Cfr13I	GGNCC	4 cut(s)	208, 739, 780, 1062
Cfr42I	CCGCGG	1 cut(s)	72
ClaI	ATCGAT	1 cut(s)	405
CseI	GACGC	1 cut(s)	308
Csp6I	GTAC	1 cut(s)	775
CspCI	CAANNNNNGTGG	2 cut(s)	805, 840
CviQI	GTAC	1 cut(s)	775
DdeI	CTNAG	2 cut(s)	329, 759
DpnI	GATC	5 cut(s)	242, 404, 436, 923, 998
DpnII	GATC	5 cut(s)	240, 402, 434, 921, 996
EaeI	YGGCCR	2 cut(s)	529, 1053
Eam1104I	CTCTTC	3 cut(s)	33, 39, 468
EarI	CTCTTC	3 cut(s)	33, 39, 468
EciI	GGCGGA	1 cut(s)	575
Eco130I	CCWWGG	2 cut(s)	169, 742
Eco147I	AGGCCT	1 cut(s)	248
Eco32I	GATATC	2 cut(s)	606, 657
Eco72I	CACGTG	1 cut(s)	289
EcoRV	GATATC	2 cut(s)	606, 657
EcoT14I	CCWWGG	2 cut(s)	169, 742
EcoT22I	ATGCAT	1 cut(s)	1043
ErhI	CCWWGG	2 cut(s)	169, 742
FaqI	GGGAC	3 cut(s)	38, 406, 663
FauI	CCCGC	2 cut(s)	25, 64
FbaI	TGATCA	1 cut(s)	240
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	5 cut(s)	255, 293, 558, 705, 957
FokI	GGATG	4 cut(s)	87, 269, 482, 1050
Fsp4HI	GCNGC	5 cut(s)	255, 293, 558, 705, 957
FspBI	CTAG	4 cut(s)	134, 269, 953, 975
GluI	GCNGC	5 cut(s)	255, 293, 558, 705, 957
GsaI	CCCAGC	2 cut(s)	626, 921
GsuI	CTGGAG	1 cut(s)	638
HaeIII	GGCC	8 cut(s)	209, 248, 531, 741, 764, 782, 1055, 1064
HapII	CCGG	5 cut(s)	206, 258, 296, 363, 546
HgaI	GACGC	1 cut(s)	308
HincII	GTYRAC	1 cut(s)	946
HindII	GTYRAC	1 cut(s)	946
HinfI	GANTC	4 cut(s)	265, 566, 676, 897
HpaII	CCGG	5 cut(s)	206, 258, 296, 363, 546
HphI	GGTGA	2 cut(s)	472, 805
Hpy166II	GTNNAC	5 cut(s)	12, 100, 463, 511, 946
Hpy188I	TCNGA	1 cut(s)	91
Hpy188III	TCNNGA	3 cut(s)	238, 445, 617
Hpy8I	GTNNAC	5 cut(s)	12, 100, 463, 511, 946
HpyAV	CCTTC	2 cut(s)	725, 887
HpyCH4III	ACNGT	2 cut(s)	97, 456
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	9 cut(s)	84, 140, 490, 505, 753, 788, 911, 982, 1041
HpyF10VI	GCNNNNNNNGC	5 cut(s)	254, 318, 592, 1038, 1061
HpyF3I	CTNAG	2 cut(s)	329, 759
HpySE526I	ACGT	1 cut(s)	288
Ksp22I	TGATCA	1 cut(s)	240
KspI	CCGCGG	1 cut(s)	72
Kzo9I	GATC	5 cut(s)	240, 402, 434, 921, 996
LmnI	GCTCC	1 cut(s)	619
Lsp1109I	GCAGC	4 cut(s)	241, 279, 716, 968
LweI	GCATC	4 cut(s)	65, 604, 920, 1028
MaeI	CTAG	4 cut(s)	134, 269, 953, 975
MaeII	ACGT	1 cut(s)	288
MalI	GATC	5 cut(s)	242, 404, 436, 923, 998
MboI	GATC	5 cut(s)	240, 402, 434, 921, 996
MfeI	CAATTG	1 cut(s)	822
MflI	RGATCY	3 cut(s)	434, 921, 996
MlsI	TGGCCA	1 cut(s)	1055
MluCI	AATT	8 cut(s)	85, 201, 627, 722, 767, 822, 828, 885
MluNI	TGGCCA	1 cut(s)	1055
MlyI	GAGTC	2 cut(s)	685, 906
MmeI	TCCRAC	1 cut(s)	817
Mox20I	TGGCCA	1 cut(s)	1055
Mph1103I	ATGCAT	1 cut(s)	1043
MroXI	GAANNNNTTC	1 cut(s)	8
MscI	TGGCCA	1 cut(s)	1055
MslI	CAYNNNNRTG	6 cut(s)	287, 374, 504, 516, 531, 537
Msp20I	TGGCCA	1 cut(s)	1055
MspA1I	CMGCKG	2 cut(s)	71, 917
MspI	CCGG	5 cut(s)	206, 258, 296, 363, 546
MunI	CAATTG	1 cut(s)	822
Mva1269I	GAATGC	2 cut(s)	86, 984
MvnI	CGCG	1 cut(s)	71
MwoI	GCNNNNNNNGC	5 cut(s)	254, 318, 592, 1038, 1061
NdeII	GATC	5 cut(s)	240, 402, 434, 921, 996
NheI	GCTAGC	1 cut(s)	952
NlaIV	GGNNCC	4 cut(s)	544, 667, 923, 998
NsiI	ATGCAT	1 cut(s)	1043
NspI	RCATGY	2 cut(s)	509, 1045
NspV	TTCGAA	1 cut(s)	729
PagI	TCATGA	1 cut(s)	237
PceI	AGGCCT	1 cut(s)	248
PctI	GAATGC	2 cut(s)	86, 984
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	2 cut(s)	265, 566
PkrI	GCNGC	5 cut(s)	256, 294, 559, 706, 958
PleI	GAGTC	2 cut(s)	684, 905
PmaCI	CACGTG	1 cut(s)	289
PmlI	CACGTG	1 cut(s)	289
PpsI	GAGTC	2 cut(s)	684, 905
Ppu21I	YACGTR	1 cut(s)	289
PspCI	CACGTG	1 cut(s)	289
PspFI	CCCAGC	2 cut(s)	622, 917
PspN4I	GGNNCC	4 cut(s)	544, 667, 923, 998
PspPI	GGNCC	4 cut(s)	208, 739, 780, 1062
PstNI	CAGNNNCTG	1 cut(s)	616
PsuI	RGATCY	3 cut(s)	434, 921, 996
PvuII	CAGCTG	1 cut(s)	917
RsaI	GTAC	1 cut(s)	776
RsaNI	GTAC	1 cut(s)	775
RseI	CAYNNNNRTG	6 cut(s)	287, 374, 504, 516, 531, 537
SacII	CCGCGG	1 cut(s)	72
SatI	GCNGC	5 cut(s)	255, 293, 558, 705, 957
Sau3AI	GATC	5 cut(s)	240, 402, 434, 921, 996
Sau96I	GGNCC	4 cut(s)	208, 739, 780, 1062
SchI	GAGTC	2 cut(s)	685, 906
SfaNI	GCATC	4 cut(s)	65, 604, 920, 1028
SfiI	GGCCNNNNNGGCC	1 cut(s)	1061
Sfr303I	CCGCGG	1 cut(s)	72
SfuI	TTCGAA	1 cut(s)	729
SgrBI	CCGCGG	1 cut(s)	72
SmiMI	CAYNNNNRTG	6 cut(s)	287, 374, 504, 516, 531, 537
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	8 cut(s)	85, 201, 627, 722, 767, 822, 828, 885
SseBI	AGGCCT	1 cut(s)	248
SsiI	CCGC	5 cut(s)	18, 69, 71, 557, 560
SspMI	CTAG	4 cut(s)	134, 269, 953, 975
StuI	AGGCCT	1 cut(s)	248
StyI	CCWWGG	2 cut(s)	169, 742
TaaI	ACNGT	2 cut(s)	97, 456
TaiI	ACGT	1 cut(s)	291
TaqI	TCGA	4 cut(s)	405, 569, 598, 729
TasI	AATT	8 cut(s)	85, 201, 627, 722, 767, 822, 828, 885
TatI	WGTACW	1 cut(s)	774
TauI	GCSGC	1 cut(s)	560
TfiI	GAWTC	2 cut(s)	265, 566
TscAI	CASTG	2 cut(s)	459, 648
TseI	GCWGC	4 cut(s)	254, 292, 704, 956
TspDTI	ATGAA	8 cut(s)	17, 226, 271, 358, 486, 494, 626, 983
TspGWI	ACGGA	1 cut(s)	1009
TspRI	CASTG	2 cut(s)	459, 648
XapI	RAATTY	3 cut(s)	201, 627, 767
XceI	RCATGY	2 cut(s)	509, 1045
XcmI	CCANNNNNNNNNTGG	1 cut(s)	790
XmiI	GTMKAC	1 cut(s)	99
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	4 cut(s)	134, 269, 953, 975
Zsp2I	ATGCAT	1 cut(s)	1043

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.