Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002306

Physical Location & Seq

Genomic Coordinates Reverse (-)

6915398 .. 6917033

Gene Structure 1636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0079900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGCACAAACTTGTAATTTGCCTGCAATTCCTTTCCCCACATTTGGGTGTACCAATTCCCTTCTTTCTTGCGCCGAACAATTTTCGTTCCCCCAGGAACCCCGGCCTCTGAAAGTTCAGAAAGATGAACCTCTTAGAGTCAATGATCTCTTTAAGCACATTCAGGATATTGTCAGGCCGGACACTGCCATAATTGCTGAAACTGGAGACTCCATGGTTCAATTGTCAGAAGCTCCGCCTCCCTGCTATATATCGAGCACAACTGTTTTGGGTGCTACTCTTGGCTGCACTCAGGGTGCGAAAGATAAACGTGTAATTGCTTGCATTGGTGATGTGAATTTCCTGGTACGTACTGAGGACTTAACTGAAGCAATTGCAAAAGCAACGGGGGAGCAGAAGTATAGTTTATGCTTCATCGAAGTTTTTGTGCTGAAAGATGACACTAGCAAAGAGCTTCTGGAATGGGGATCCCGAGTTTCAGCTGCTAACAGCCGACCTCCAAATCCTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0071944 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

170

Amino Acids

18.58

Weight (kDa)

4.91

Isoelectric Point (pI)

46.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12750
fragaria_vesca	FvH4_3g12900 FvH4_3g14490 FvH4_3g14490
malus_domestica	MD05G1236500.v1.1 MD05G1236600.v1.1 MD05G1247200.v1.1 MD10G1227800.v1.1
prunus_persica	Prupe.4G117200_v2.0.a1 Prupe.4G129600_v2.0.a1 Prupe.4G129700_v2.0.a1
pyrus_communis	pycom05g21350 pycom05g22310 pycom10g19130
rosa_chinensis	RchiOBHm_Chr5g0021001 RchiOBHm_Chr5g0023861 RchiOBHm_Chr5g0023871
rosa_laevigata	RLG00000032576 RLG00000032741 RLG00000032742
rosa_multiflora	Rmu_sc0001372.1_g000002 Rmu_sc0001372.1_g000005 Rmu_ssc0000027.1_g000003 Rmu_ssc0000244.1_g000011
rosa_roxburghii	Rroxscaffold_1G00055380 Rroxscaffold_1G00057480
rosa_rugosa	Rorug05G0063700 Rorug05G0079800 Rorug05G0079900
rosa_samantha	Rh5AG153300 Rh5AG169900 Rh5AG170000 Rh5BG153000 Rh5BG167200 Rh5BG167300 Rh5CG165600 Rh5CG182800 Rh5DG152400 Rh5DG169300
rosa_wichuraiana	Rw5G013620 Rw5G015360 Rw5G015370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	236
AclWI	GGATC	2 cut(s)	462, 475
AcsI	RAATTY	1 cut(s)	337
AcuI	CTGAAG	1 cut(s)	387
AfaI	GTAC	3 cut(s)	52, 348, 352
AfiI	CCNNNNNNNGG	2 cut(s)	44, 45
AflIII	ACRYGT	1 cut(s)	310
AgsI	TTSAA	1 cut(s)	221
AjnI	CCWGG	2 cut(s)	93, 342
AluBI	AGCT	3 cut(s)	233, 454, 482
AluI	AGCT	3 cut(s)	233, 454, 482
Alw21I	GWGCWC	1 cut(s)	260
Alw26I	GTCTC	1 cut(s)	201
AlwI	GGATC	2 cut(s)	462, 475
Ama87I	CYCGRG	1 cut(s)	471
AoxI	GGCC	2 cut(s)	104, 176
ApeKI	GCWGC	2 cut(s)	285, 482
ApoI	RAATTY	1 cut(s)	337
AspLEI	GCGC	1 cut(s)	74
AsuC2I	CCSGG	1 cut(s)	103
AsuHPI	GGTGA	1 cut(s)	341
AvaI	CYCGRG	1 cut(s)	471
BamHI	GGATCC	1 cut(s)	467
Bbv12I	GWGCWC	1 cut(s)	260
BbvI	GCAGC	2 cut(s)	272, 469
BciT130I	CCWGG	2 cut(s)	95, 344
BcnI	CCSGG	1 cut(s)	103
BcoDI	GTCTC	1 cut(s)	201
BfaI	CTAG	1 cut(s)	444
BisI	GCNGC	2 cut(s)	286, 483
BlsI	GCNGC	2 cut(s)	287, 484
Bme1390I	CCNGG	3 cut(s)	95, 103, 344
BmeT110I	CYCGRG	1 cut(s)	471
BmiI	GGNNCC	2 cut(s)	99, 469
BmrFI	CCNGG	3 cut(s)	95, 103, 344
BpmI	CTGGAG	1 cut(s)	225
BpuMI	CCSGG	1 cut(s)	103
BsaAI	YACGTR	1 cut(s)	350
BsaJI	CCNNGG	3 cut(s)	93, 101, 213
BsaXI	ACNNNNNCTCC	2 cut(s)	383, 413
Bsc4I	CCNNNNNNNGG	2 cut(s)	44, 45
Bse1I	ACTGG	1 cut(s)	208
BseBI	CCWGG	2 cut(s)	95, 344
BseDI	CCNNGG	3 cut(s)	93, 101, 213
BseLI	CCNNNNNNNGG	2 cut(s)	44, 45
BseMII	CTCAG	2 cut(s)	305, 345
BseNI	ACTGG	1 cut(s)	208
BseXI	GCAGC	2 cut(s)	272, 469
BsgI	GTGCAG	1 cut(s)	271
BshFI	GGCC	2 cut(s)	106, 178
BsiHKAI	GWGCWC	1 cut(s)	260
BsiHKCI	CYCGRG	1 cut(s)	471
BsiSI	CCGG	2 cut(s)	103, 179
BslI	CCNNNNNNNGG	2 cut(s)	44, 45
BsmAI	GTCTC	1 cut(s)	201
BsnI	GGCC	2 cut(s)	106, 178
BsoBI	CYCGRG	1 cut(s)	471
Bsp1286I	GDGCHC	1 cut(s)	260
Bsp143I	GATC	2 cut(s)	145, 467
Bsp19I	CCATGG	1 cut(s)	213
BspACI	CCGC	1 cut(s)	236
BspANI	GGCC	2 cut(s)	106, 178
BspCNI	CTCAG	2 cut(s)	304, 346
BspLI	GGNNCC	2 cut(s)	99, 469
BspPI	GGATC	2 cut(s)	462, 475
BsrI	ACTGG	1 cut(s)	208
BssECI	CCNNGG	3 cut(s)	93, 101, 213
BssMI	GATC	2 cut(s)	145, 467
BssT1I	CCWWGG	1 cut(s)	213
Bst2UI	CCWGG	2 cut(s)	95, 344
Bst4CI	ACNGT	1 cut(s)	265
BstBAI	YACGTR	1 cut(s)	350
BstC8I	GCNNGC	2 cut(s)	24, 322
BstDEI	CTNAG	4 cut(s)	134, 291, 354, 507
BstDSI	CCRYGG	1 cut(s)	213
BstHHI	GCGC	1 cut(s)	74
BstKTI	GATC	2 cut(s)	148, 470
BstMAI	GTCTC	1 cut(s)	201
BstMBI	GATC	2 cut(s)	145, 467
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstNI	CCWGG	2 cut(s)	95, 344
BstSCI	CCNGG	3 cut(s)	93, 101, 342
BstSNI	TACGTA	1 cut(s)	350
BstV1I	GCAGC	2 cut(s)	272, 469
BstX2I	RGATCY	1 cut(s)	467
BstYI	RGATCY	1 cut(s)	467
BsuRI	GGCC	2 cut(s)	106, 178
BtgI	CCRYGG	1 cut(s)	213
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	1 cut(s)	183
Cac8I	GCNNGC	2 cut(s)	24, 322
CfoI	GCGC	1 cut(s)	74
Csp6I	GTAC	3 cut(s)	51, 347, 351
CviAII	CATG	1 cut(s)	214
CviJI	RGCY	7 cut(s)	106, 178, 233, 285, 454, 482, 492
CviKI_1	RGCY	7 cut(s)	106, 178, 233, 285, 454, 482, 492
CviQI	GTAC	3 cut(s)	51, 347, 351
DdeI	CTNAG	4 cut(s)	134, 291, 354, 507
DpnI	GATC	2 cut(s)	147, 469
DpnII	GATC	2 cut(s)	145, 467
EciI	GGCGGA	1 cut(s)	225
Eco105I	TACGTA	1 cut(s)	350
Eco130I	CCWWGG	1 cut(s)	213
Eco57I	CTGAAG	1 cut(s)	387
Eco88I	CYCGRG	1 cut(s)	471
EcoRII	CCWGG	2 cut(s)	93, 342
EcoT14I	CCWWGG	1 cut(s)	213
ErhI	CCWWGG	1 cut(s)	213
FaeI	CATG	1 cut(s)	217
FaiI	YATR	6 cut(s)	191, 215, 249, 251, 402, 409
FatI	CATG	1 cut(s)	213
Fnu4HI	GCNGC	2 cut(s)	286, 483
Fsp4HI	GCNGC	2 cut(s)	286, 483
FspBI	CTAG	1 cut(s)	444
GlaI	GCGC	1 cut(s)	73
GluI	GCNGC	2 cut(s)	286, 483
GsuI	CTGGAG	1 cut(s)	225
HaeIII	GGCC	2 cut(s)	106, 178
HapII	CCGG	2 cut(s)	103, 179
HhaI	GCGC	1 cut(s)	74
Hin1II	CATG	1 cut(s)	217
Hin6I	GCGC	1 cut(s)	72
HinP1I	GCGC	1 cut(s)	72
HinfI	GANTC	2 cut(s)	138, 209
HpaII	CCGG	2 cut(s)	103, 179
HphI	GGTGA	1 cut(s)	341
Hpy166II	GTNNAC	1 cut(s)	51
Hpy188I	TCNGA	3 cut(s)	111, 120, 229
Hpy188III	TCNNGA	3 cut(s)	164, 458, 471
Hpy8I	GTNNAC	1 cut(s)	51
HpyAV	CCTTC	1 cut(s)	71
HpyCH4III	ACNGT	1 cut(s)	265
HpyCH4IV	ACGT	2 cut(s)	310, 349
HpyCH4V	TGCA	4 cut(s)	26, 288, 324, 377
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
HpyF3I	CTNAG	4 cut(s)	134, 291, 354, 507
HpySE526I	ACGT	2 cut(s)	310, 349
Hsp92II	CATG	1 cut(s)	217
HspAI	GCGC	1 cut(s)	72
Kzo9I	GATC	2 cut(s)	145, 467
LmnI	GCTCC	2 cut(s)	238, 391
Lsp1109I	GCAGC	2 cut(s)	272, 469
MaeI	CTAG	1 cut(s)	444
MaeII	ACGT	2 cut(s)	310, 349
MalI	GATC	2 cut(s)	147, 469
MboI	GATC	2 cut(s)	145, 467
MfeI	CAATTG	2 cut(s)	221, 372
MflI	RGATCY	1 cut(s)	467
MhlI	GDGCHC	1 cut(s)	260
MluCI	AATT	9 cut(s)	16, 27, 55, 80, 192, 221, 315, 337, 372
MlyI	GAGTC	2 cut(s)	147, 203
MnlI	CCTC	5 cut(s)	117, 141, 249, 349, 507
MseI	TTAA	2 cut(s)	153, 362
MslI	CAYNNNNRTG	1 cut(s)	46
MspA1I	CMGCKG	1 cut(s)	482
MspI	CCGG	2 cut(s)	103, 179
MspR9I	CCNGG	3 cut(s)	95, 103, 344
MunI	CAATTG	2 cut(s)	221, 372
MvaI	CCWGG	2 cut(s)	95, 344
MwoI	GCNNNNNNNGC	1 cut(s)	194
NciI	CCSGG	1 cut(s)	103
NcoI	CCATGG	1 cut(s)	213
NdeII	GATC	2 cut(s)	145, 467
NlaIII	CATG	1 cut(s)	217
NlaIV	GGNNCC	2 cut(s)	99, 469
PkrI	GCNGC	2 cut(s)	287, 484
PleI	GAGTC	2 cut(s)	146, 203
PpsI	GAGTC	2 cut(s)	146, 203
Ppu21I	YACGTR	1 cut(s)	350
Psp6I	CCWGG	2 cut(s)	93, 342
PspGI	CCWGG	2 cut(s)	93, 342
PspN4I	GGNNCC	2 cut(s)	99, 469
PsuI	RGATCY	1 cut(s)	467
PvuII	CAGCTG	1 cut(s)	482
RsaI	GTAC	3 cut(s)	52, 348, 352
RsaNI	GTAC	3 cut(s)	51, 347, 351
RseI	CAYNNNNRTG	1 cut(s)	46
SaqAI	TTAA	2 cut(s)	153, 362
SatI	GCNGC	2 cut(s)	286, 483
Sau3AI	GATC	2 cut(s)	145, 467
SchI	GAGTC	2 cut(s)	147, 203
ScrFI	CCNGG	3 cut(s)	95, 103, 344
SduI	GDGCHC	1 cut(s)	260
SetI	ASST	7 cut(s)	133, 235, 313, 352, 456, 484, 499
SmiMI	CAYNNNNRTG	1 cut(s)	46
SnaBI	TACGTA	1 cut(s)	350
Sse9I	AATT	9 cut(s)	16, 27, 55, 80, 192, 221, 315, 337, 372
SsiI	CCGC	1 cut(s)	236
SspMI	CTAG	1 cut(s)	444
StyD4I	CCNGG	3 cut(s)	93, 101, 342
StyI	CCWWGG	1 cut(s)	213
TaaI	ACNGT	1 cut(s)	265
TaiI	ACGT	2 cut(s)	313, 352
TaqI	TCGA	2 cut(s)	254, 417
TasI	AATT	9 cut(s)	16, 27, 55, 80, 192, 221, 315, 337, 372
Tru1I	TTAA	2 cut(s)	153, 362
Tru9I	TTAA	2 cut(s)	153, 362
TscAI	CASTG	1 cut(s)	190
TseI	GCWGC	2 cut(s)	285, 482
TspDTI	ATGAA	2 cut(s)	141, 403
TspRI	CASTG	1 cut(s)	190
XapI	RAATTY	1 cut(s)	337
XspI	CTAG	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.