Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0010622

Physical Location & Seq

Genomic Coordinates Reverse (-)

29562155 .. 29563536

Gene Structure 1382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G012570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGATTGCCAGTGTCTCGAGACAAGGAAGATATGCAGAAATCAGATTCTCTGGATAGCTTATTTGGCGACAAAGATGCAAGTAGTGCTCTGGAAGTTTATGGAACCTGATTTACCTGATGGACCTGACGATGGAAAAAAGGCGTCCTTACTTATGATGAATTTTTCTAGAGATGAAGTTGAGTTTGCAATGAATATGCTTGGTAGGTTGAAATTTCTGGATATTCATTTCACAGCAAGAGGCTTTGCTGATTGTCAGATTTGTGTTTGTCAAACCTCTAATAACGTGGATCTTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_methylase

Protein Analysis

99

Amino Acids

11.46

Weight (kDa)

5.22

Isoelectric Point (pI)

13.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010622)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0490961
rosa_laevigata	RLG00000003376 RLG00000009552 RLG00000030034 RLG00000030420
rosa_roxburghii	Rroxscaffold_3G00221510 Rroxscaffold_5G00337500
rosa_rugosa	Rorug01G0065900 Rorug04G0009000 Rorug05G0079800
rosa_samantha	Rh2DG569000 Rh3AG337800 Rh3DG302200 Rh5CG578600 Rh6AG091900 Rh6CG079600 Rh6CG206700 Rh6DG075100 Rh7BG186300 Rh7BG186400
rosa_wichuraiana	Rw4G012570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	297
AcsI	RAATTY	2 cut(s)	160, 212
AcyI	GRCGYC	1 cut(s)	143
AfiI	CCNNNNNNNGG	1 cut(s)	131
AgsI	TTSAA	1 cut(s)	211
AluBI	AGCT	1 cut(s)	59
AluI	AGCT	1 cut(s)	59
Alw21I	GWGCWC	1 cut(s)	90
Alw26I	GTCTC	2 cut(s)	14, 20
AlwI	GGATC	1 cut(s)	297
Ama87I	CYCGRG	1 cut(s)	17
ApoI	RAATTY	2 cut(s)	160, 212
AspS9I	GGNCC	1 cut(s)	122
AvaI	CYCGRG	1 cut(s)	17
AvaII	GGWCC	1 cut(s)	122
Bbv12I	GWGCWC	1 cut(s)	90
BccI	CCATC	2 cut(s)	113, 125
BcgI	CGANNNNNNTGC	2 cut(s)	58, 92
BcoDI	GTCTC	2 cut(s)	14, 20
BfaI	CTAG	1 cut(s)	168
Bme18I	GGWCC	1 cut(s)	122
BmeT110I	CYCGRG	1 cut(s)	17
BmgT120I	GGNCC	1 cut(s)	122
BmiI	GGNNCC	1 cut(s)	105
BmsI	GCATC	1 cut(s)	66
BsaHI	GRCGYC	1 cut(s)	143
Bsc4I	CCNNNNNNNGG	1 cut(s)	131
Bse1I	ACTGG	1 cut(s)	10
Bse3DI	GCAATG	1 cut(s)	195
BseLI	CCNNNNNNNGG	1 cut(s)	131
BseMI	GCAATG	1 cut(s)	195
BseNI	ACTGG	1 cut(s)	10
BsiHKAI	GWGCWC	1 cut(s)	90
BsiHKCI	CYCGRG	1 cut(s)	17
BslI	CCNNNNNNNGG	1 cut(s)	131
BsmAI	GTCTC	2 cut(s)	14, 20
BsoBI	CYCGRG	1 cut(s)	17
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp143I	GATC	1 cut(s)	289
BspLI	GGNNCC	1 cut(s)	105
BspPI	GGATC	1 cut(s)	297
BsrDI	GCAATG	1 cut(s)	195
BsrI	ACTGG	1 cut(s)	10
BssMI	GATC	1 cut(s)	289
BssNI	GRCGYC	1 cut(s)	143
BstACI	GRCGYC	1 cut(s)	143
BstAPI	GCANNNNNTGC	1 cut(s)	85
BstKTI	GATC	1 cut(s)	292
BstMAI	GTCTC	2 cut(s)	14, 20
BstMBI	GATC	1 cut(s)	289
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 85
BstX2I	RGATCY	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	289
BtsIMutI	CAGTG	1 cut(s)	17
Cfr13I	GGNCC	1 cut(s)	122
CseI	GACGC	1 cut(s)	132
CviJI	RGCY	2 cut(s)	59, 243
CviKI_1	RGCY	2 cut(s)	59, 243
DpnI	GATC	1 cut(s)	291
DpnII	GATC	1 cut(s)	289
Eco47I	GGWCC	1 cut(s)	122
Eco88I	CYCGRG	1 cut(s)	17
FaiI	YATR	5 cut(s)	34, 101, 155, 197, 298
FalI	AAGNNNNNCTT	2 cut(s)	131, 163
FspBI	CTAG	1 cut(s)	168
HgaI	GACGC	1 cut(s)	132
Hin1I	GRCGYC	1 cut(s)	143
HinfI	GANTC	1 cut(s)	46
Hpy188I	TCNGA	2 cut(s)	45, 258
Hpy188III	TCNNGA	6 cut(s)	17, 19, 52, 91, 168, 218
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	3 cut(s)	36, 79, 188
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 85
HpySE526I	ACGT	1 cut(s)	285
Hsp92I	GRCGYC	1 cut(s)	143
Kzo9I	GATC	1 cut(s)	289
LpnPI	CCDG	7 cut(s)	23, 37, 76, 120, 129, 138, 203
LweI	GCATC	1 cut(s)	66
MaeI	CTAG	1 cut(s)	168
MaeII	ACGT	1 cut(s)	285
MalI	GATC	1 cut(s)	291
MboI	GATC	1 cut(s)	289
MboII	GAAGA	2 cut(s)	40, 284
MflI	RGATCY	1 cut(s)	289
MhlI	GDGCHC	1 cut(s)	90
MluCI	AATT	2 cut(s)	160, 212
MnlI	CCTC	2 cut(s)	233, 286
MwoI	GCNNNNNNNGC	2 cut(s)	65, 85
NdeII	GATC	1 cut(s)	289
NlaIV	GGNNCC	1 cut(s)	105
PaeR7I	CTCGAG	1 cut(s)	17
PfeI	GAWTC	1 cut(s)	46
PspN4I	GGNNCC	1 cut(s)	105
PspPI	GGNCC	1 cut(s)	122
PsrI	GAACNNNNNNTAC	2 cut(s)	96, 128
PsuI	RGATCY	1 cut(s)	289
Sau3AI	GATC	1 cut(s)	289
Sau96I	GGNCC	1 cut(s)	122
SduI	GDGCHC	1 cut(s)	90
SetI	ASST	7 cut(s)	61, 109, 118, 127, 209, 278, 288
SfaNI	GCATC	1 cut(s)	66
Sfr274I	CTCGAG	1 cut(s)	17
SinI	GGWCC	1 cut(s)	122
SlaI	CTCGAG	1 cut(s)	17
SmlI	CTYRAG	1 cut(s)	17
SmoI	CTYRAG	1 cut(s)	17
Sse9I	AATT	2 cut(s)	160, 212
SspMI	CTAG	1 cut(s)	168
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	1 cut(s)	18
TasI	AATT	2 cut(s)	160, 212
TfiI	GAWTC	1 cut(s)	46
TscAI	CASTG	1 cut(s)	17
TspDTI	ATGAA	4 cut(s)	173, 189, 206, 215
TspRI	CASTG	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	122
XapI	RAATTY	2 cut(s)	160, 212
XbaI	TCTAGA	1 cut(s)	167
XhoI	CTCGAG	1 cut(s)	17
XspI	CTAG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.