Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0010622

Physical Location & Seq

Genomic Coordinates Forward (+)

5657077 .. 5670136

Gene Structure 13060 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00337500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGCATGCTAGTGGCTTACCTCTTGATTCATTCAGTTACATGAAGATCCGAATCATGCATGATATGCAGAAATCAGATTCTCTGGATAGCTTATTTGGCGACAAAGATGCAAGTAGTGCTCTGGAAGTTTCTGGTATGATTCAACCAAAAGAGAGACACCTTATACAAGCTGCTCCTTCCAGTGGTGACTTTTTCCAAAGCTCTTCGATGCAAAAGAGCTCTACAGGACCTCTGCATTGCACATTAATCCAATCCATGCCACTACTGACCTCTGGAAAAATAGAGGAATCATCACATGAATCTGGTATTACAGCTACAGAATATTTCCAAATCCCAAAAACGAAACCCGACGACAAACCCAAGGCTATTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

124

Amino Acids

13.52

Weight (kDa)

5.9

Isoelectric Point (pI)

59.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010622)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0490961
rosa_laevigata	RLG00000003376 RLG00000009552 RLG00000030034 RLG00000030420
rosa_roxburghii	Rroxscaffold_3G00221510 Rroxscaffold_5G00337500
rosa_rugosa	Rorug01G0065900 Rorug04G0009000 Rorug05G0079800
rosa_samantha	Rh2DG569000 Rh3AG337800 Rh3DG302200 Rh5CG578600 Rh6AG091900 Rh6CG079600 Rh6CG206700 Rh6DG075100 Rh7BG186300 Rh7BG186400
rosa_wichuraiana	Rw4G012570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	40
AfiI	CCNNNNNNNGG	1 cut(s)	182
AgsI	TTSAA	1 cut(s)	143
AluBI	AGCT	5 cut(s)	90, 170, 201, 219, 314
AluI	AGCT	5 cut(s)	90, 170, 201, 219, 314
Alw21I	GWGCWC	2 cut(s)	121, 221
Alw26I	GTCTC	1 cut(s)	148
AlwI	GGATC	1 cut(s)	40
ApeKI	GCWGC	1 cut(s)	170
AseI	ATTAAT	1 cut(s)	245
AspS9I	GGNCC	1 cut(s)	227
AsuHPI	GGTGA	1 cut(s)	197
AvaII	GGWCC	1 cut(s)	227
BanII	GRGCYC	1 cut(s)	221
Bbv12I	GWGCWC	2 cut(s)	121, 221
BbvI	GCAGC	1 cut(s)	157
BcgI	CGANNNNNNTGC	2 cut(s)	89, 123
BcoDI	GTCTC	1 cut(s)	148
BfaI	CTAG	1 cut(s)	9
BfmI	CTRYAG	2 cut(s)	222, 315
BisI	GCNGC	1 cut(s)	171
BlsI	GCNGC	1 cut(s)	172
Bme18I	GGWCC	1 cut(s)	227
BmgT120I	GGNCC	1 cut(s)	227
BmsI	GCATC	2 cut(s)	97, 198
BsaBI	GATNNNNATC	1 cut(s)	50
BsaJI	CCNNGG	1 cut(s)	360
Bsc4I	CCNNNNNNNGG	1 cut(s)	182
Bse1I	ACTGG	1 cut(s)	180
Bse3DI	GCAATG	1 cut(s)	235
Bse8I	GATNNNNATC	1 cut(s)	50
BseDI	CCNNGG	1 cut(s)	360
BseJI	GATNNNNATC	1 cut(s)	50
BseLI	CCNNNNNNNGG	1 cut(s)	182
BseMI	GCAATG	1 cut(s)	235
BseNI	ACTGG	1 cut(s)	180
BseXI	GCAGC	1 cut(s)	157
BsiHKAI	GWGCWC	2 cut(s)	121, 221
BslI	CCNNNNNNNGG	1 cut(s)	182
BsmAI	GTCTC	1 cut(s)	148
Bsp1286I	GDGCHC	2 cut(s)	121, 221
Bsp143I	GATC	1 cut(s)	45
BspPI	GGATC	1 cut(s)	40
BspQI	GCTCTTC	1 cut(s)	208
BsrDI	GCAATG	1 cut(s)	235
BsrI	ACTGG	1 cut(s)	180
BssECI	CCNNGG	1 cut(s)	360
BssMI	GATC	1 cut(s)	45
BssT1I	CCWWGG	1 cut(s)	360
Bst6I	CTCTTC	1 cut(s)	208
BstAPI	GCANNNNNTGC	2 cut(s)	64, 116
BstC8I	GCNNGC	1 cut(s)	6
BstKTI	GATC	1 cut(s)	48
BstMAI	GTCTC	1 cut(s)	148
BstMBI	GATC	1 cut(s)	45
BstMWI	GCNNNNNNNGC	3 cut(s)	64, 96, 116
BstNSI	RCATGY	1 cut(s)	8
BstSFI	CTRYAG	2 cut(s)	222, 315
BstV1I	GCAGC	1 cut(s)	157
BstX2I	RGATCY	1 cut(s)	45
BstYI	RGATCY	1 cut(s)	45
BtsIMutI	CAGTG	1 cut(s)	187
Cac8I	GCNNGC	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	227
CviAII	CATG	6 cut(s)	5, 40, 55, 59, 256, 296
CviJI	RGCY	7 cut(s)	15, 90, 170, 201, 219, 314, 365
CviKI_1	RGCY	7 cut(s)	15, 90, 170, 201, 219, 314, 365
DpnI	GATC	1 cut(s)	47
DpnII	GATC	1 cut(s)	45
Eam1104I	CTCTTC	1 cut(s)	208
EarI	CTCTTC	1 cut(s)	208
Ecl136II	GAGCTC	1 cut(s)	219
Eco130I	CCWWGG	1 cut(s)	360
Eco24I	GRGCYC	1 cut(s)	221
Eco47I	GGWCC	1 cut(s)	227
Eco53kI	GAGCTC	1 cut(s)	219
EcoICRI	GAGCTC	1 cut(s)	219
EcoO109I	RGGNCCY	1 cut(s)	227
EcoT14I	CCWWGG	1 cut(s)	360
EcoT22I	ATGCAT	2 cut(s)	6, 60
EcoT38I	GRGCYC	1 cut(s)	221
ErhI	CCWWGG	1 cut(s)	360
FaeI	CATG	6 cut(s)	8, 43, 58, 62, 259, 299
FatI	CATG	6 cut(s)	4, 39, 54, 58, 255, 295
Fnu4HI	GCNGC	1 cut(s)	171
FriOI	GRGCYC	1 cut(s)	221
Fsp4HI	GCNGC	1 cut(s)	171
FspBI	CTAG	1 cut(s)	9
GluI	GCNGC	1 cut(s)	171
Hin1II	CATG	6 cut(s)	8, 43, 58, 62, 259, 299
HinfI	GANTC	6 cut(s)	26, 51, 77, 139, 287, 299
HphI	GGTGA	1 cut(s)	197
Hpy188I	TCNGA	2 cut(s)	50, 76
Hpy188III	TCNNGA	4 cut(s)	23, 83, 122, 273
Hpy99I	CGWCG	1 cut(s)	353
HpyAV	CCTTC	1 cut(s)	186
HpyCH4V	TGCA	8 cut(s)	4, 58, 67, 110, 211, 235, 240, 371
HpyF10VI	GCNNNNNNNGC	3 cut(s)	64, 96, 116
Hsp92II	CATG	6 cut(s)	8, 43, 58, 62, 259, 299
Kzo9I	GATC	1 cut(s)	45
LguI	GCTCTTC	1 cut(s)	208
LmnI	GCTCC	1 cut(s)	178
LpnPI	CCDG	7 cut(s)	68, 107, 117, 193, 210, 258, 288
Lsp1109I	GCAGC	1 cut(s)	157
LweI	GCATC	2 cut(s)	97, 198
MaeI	CTAG	1 cut(s)	9
MaeIII	GTNAC	2 cut(s)	35, 185
MalI	GATC	1 cut(s)	47
MboI	GATC	1 cut(s)	45
MboII	GAAGA	2 cut(s)	55, 195
MflI	RGATCY	1 cut(s)	45
MhlI	GDGCHC	2 cut(s)	121, 221
MnlI	CCTC	4 cut(s)	30, 240, 277, 280
Mph1103I	ATGCAT	2 cut(s)	6, 60
MseI	TTAA	1 cut(s)	245
MslI	CAYNNNNRTG	1 cut(s)	9
MwoI	GCNNNNNNNGC	3 cut(s)	64, 96, 116
NdeII	GATC	1 cut(s)	45
NlaIII	CATG	6 cut(s)	8, 43, 58, 62, 259, 299
NmuCI	GTSAC	1 cut(s)	185
NsiI	ATGCAT	2 cut(s)	6, 60
NspI	RCATGY	1 cut(s)	8
PaeI	GCATGC	1 cut(s)	8
PciSI	GCTCTTC	1 cut(s)	208
PfeI	GAWTC	6 cut(s)	26, 51, 77, 139, 287, 299
PkrI	GCNGC	1 cut(s)	172
PpuMI	RGGWCCY	1 cut(s)	227
PshBI	ATTAAT	1 cut(s)	245
Psp124BI	GAGCTC	1 cut(s)	221
Psp5II	RGGWCCY	1 cut(s)	227
PspPI	GGNCC	1 cut(s)	227
PspPPI	RGGWCCY	1 cut(s)	227
PsuI	RGATCY	1 cut(s)	45
RseI	CAYNNNNRTG	1 cut(s)	9
SacI	GAGCTC	1 cut(s)	221
SapI	GCTCTTC	1 cut(s)	208
SaqAI	TTAA	1 cut(s)	245
SatI	GCNGC	1 cut(s)	171
Sau3AI	GATC	1 cut(s)	45
Sau96I	GGNCC	1 cut(s)	227
SduI	GDGCHC	2 cut(s)	121, 221
SetI	ASST	9 cut(s)	22, 92, 162, 172, 203, 221, 232, 272, 316
SfaNI	GCATC	2 cut(s)	97, 198
SfcI	CTRYAG	2 cut(s)	222, 315
SinI	GGWCC	1 cut(s)	227
SmiMI	CAYNNNNRTG	1 cut(s)	9
SphI	GCATGC	1 cut(s)	8
SspI	AATATT	1 cut(s)	323
SspMI	CTAG	1 cut(s)	9
SstI	GAGCTC	1 cut(s)	221
StyI	CCWWGG	1 cut(s)	360
TaqI	TCGA	1 cut(s)	206
TfiI	GAWTC	6 cut(s)	26, 51, 77, 139, 287, 299
Tru1I	TTAA	1 cut(s)	245
Tru9I	TTAA	1 cut(s)	245
TscAI	CASTG	1 cut(s)	187
TseFI	GTSAC	1 cut(s)	185
TseI	GCWGC	1 cut(s)	170
Tsp45I	GTSAC	1 cut(s)	185
TspDTI	ATGAA	3 cut(s)	18, 56, 312
TspRI	CASTG	1 cut(s)	187
VpaK11BI	GGWCC	1 cut(s)	227
VspI	ATTAAT	1 cut(s)	245
XceI	RCATGY	1 cut(s)	8
XspI	CTAG	1 cut(s)	9
Zsp2I	ATGCAT	2 cut(s)	6, 60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.