Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0008065

Physical Location & Seq

Genomic Coordinates Reverse (-)

10157018 .. 10158685

Gene Structure 1668 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032007

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGTTGGAAATGGTGCAGGCCATTGACATTTCCAACAATAATCTTTCAGGGATGATTCCTGTAGCATTAGAAGGCTGCAGGAATTTGTACTGTCTTGATCTGTCAGGCCCTGTTCCAGACACCGGACTATTCAGAAGTATAAATGCATCCAGCTTGGTAGGAAACCCGGATCTCTGTGGAAACAAACTGCTCAAGACCTGCAAGAAAAGTTCACACCGGATATCCAAGACAACCAAGTACGTTCTCGTGGCGCTTGGCATCATTGCTGTACTGCTTATTCTAGTGATCATTTTCCTAATCCTCAGCCGGTTCACCAAAATGTGTAAGCCAGAAAAGATTGAAAATCCAGAACCAGAGTGTGCTGCGGCTTTGGCACTCAAGAGGTCTGATCAAAGGGATTTAGAAAATGCCACTAGTTCCTTCAGCAAGGAGAACATTTTAGGCGCAAGCAGTTTGAGTACTGTGTACGTGGGCTATGCATGGGAGAGCGGGAAATTAAAGGCCCTGGTTCTGGAATACATGGAGAATGGGAACCTGGAGAACATTCCTTCTAACATCTTGTTGGATGATGATTGGGAGGCCCATGTGAGTGATTTTGGAACAGCTAGAATGTTGGGTGTTCACCTCCAGGATGGGAAGTTTGCATACATGAGGAAAATCACAACCAAGGTAGACGTGTTCAGCTTTGGTGTAATAGTGATGGAGTTACTGACAAGACAAAGGCCAACAGGACTCATGGAAGAGAACGGGCTGCCAATGAGCTTGCACCAACTAGTGGAGAGAGCCCTTGCAAATGGATCAGATTCGCTTCTTGAAGTTCTGGACCCATTGCTAACTTCAAATATCTCCAAGGAACAGGAGGCTAGTGCAGAAGAGCTGCTCAAGCTAGCCTTGTTTTGCACCAACCAACATCCCGGGGAGCGACCTATCATGAATGAGGTGTTGTCTGCTCTTTTGACGCTGAAAAAGGCAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0006898 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009595 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010359 GO:0012505 GO:0016020 GO:0016043 GO:0016045 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022898 GO:0023052 GO:0031410 GO:0031982 GO:0032409 GO:0032412 GO:0032879 GO:0033036 GO:0033037 GO:0033554 GO:0034762 GO:0034765 GO:0036211 GO:0038023 GO:0042545 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043269 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051606 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0060089 GO:0065007 GO:0065009 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098542 GO:0098543 GO:0098581 GO:0098657 GO:0140096 GO:1901564 GO:1903959

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

326

Amino Acids

35.71

Weight (kDa)

5.52

Isoelectric Point (pI)

36.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	183 - 316	1.1e-07	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46330 AT5G46330
fragaria_vesca	FvH4_3g06100
malus_domestica	MD05G1289000.v1.1
prunus_persica	Prupe.4G076500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0013311
rosa_laevigata	RLG00000032007 RLG00000032011
rosa_multiflora	Rmu_co8051088.1_g000001 Rmu_sc0003458.1_g000007 Rmu_sc0003458.1_g000011 Rmu_sc0004521.1_g000021 Rmu_sc0007948.1_g000008
rosa_roxburghii	Rroxscaffold_1G00063230
rosa_rugosa	Rorug05G0008800
rosa_samantha	Rh5AG103400 Rh5AG103500 Rh5AG104200 Rh5BG100200 Rh5CG111400 Rh5CG111800 Rh5DG099000
rosa_wichuraiana	Rw5G009030 Rw5G009070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	206
AccB7I	CCANNNNNTGG	1 cut(s)	775
AccBSI	CCGCTC	1 cut(s)	489
AccI	GTMKAC	1 cut(s)	672
AciI	CCGC	2 cut(s)	365, 489
AclWI	GGATC	2 cut(s)	177, 805
AcsI	RAATTY	1 cut(s)	82
AcuI	CTGAAG	1 cut(s)	406
AfaI	GTAC	5 cut(s)	89, 239, 270, 460, 467
AfiI	CCNNNNNNNGG	3 cut(s)	122, 511, 775
AflIII	ACRYGT	1 cut(s)	675
AgsI	TTSAA	3 cut(s)	341, 815, 840
AhlI	ACTAGT	2 cut(s)	413, 772
AjiI	CACGTC	1 cut(s)	676
AjnI	CCWGG	3 cut(s)	504, 534, 627
AluBI	AGCT	6 cut(s)	153, 605, 684, 762, 877, 886
AluI	AGCT	6 cut(s)	153, 605, 684, 762, 877, 886
AlwI	GGATC	2 cut(s)	177, 805
AlwNI	CAGNNNCTG	1 cut(s)	110
Ama87I	CYCGRG	1 cut(s)	914
AoxI	GGCC	5 cut(s)	18, 106, 501, 579, 722
ApeKI	GCWGC	4 cut(s)	75, 362, 751, 877
ApoI	RAATTY	1 cut(s)	82
AspLEI	GCGC	2 cut(s)	253, 446
AspS9I	GGNCC	4 cut(s)	107, 502, 580, 823
AsuC2I	CCSGG	3 cut(s)	167, 915, 916
AsuHPI	GGTGA	2 cut(s)	304, 614
AsuNHI	GCTAGC	1 cut(s)	886
AvaI	CYCGRG	1 cut(s)	914
AvaII	GGWCC	1 cut(s)	823
BanII	GRGCYC	1 cut(s)	787
BarI	GAAGNNNNNNTAC	2 cut(s)	629, 661
BauI	CACGAG	1 cut(s)	245
BbvCI	CCTCAGC	1 cut(s)	302
BbvI	GCAGC	4 cut(s)	62, 349, 738, 864
BccI	CCATC	2 cut(s)	626, 694
BciT130I	CCWGG	3 cut(s)	506, 536, 629
BclI	TGATCA	2 cut(s)	285, 388
BcnI	CCSGG	3 cut(s)	167, 915, 916
BcuI	ACTAGT	2 cut(s)	413, 772
BfaI	CTAG	6 cut(s)	281, 414, 606, 773, 864, 887
BfmI	CTRYAG	2 cut(s)	60, 76
BfoI	RGCGCY	1 cut(s)	254
BfuAI	ACCTGC	1 cut(s)	206
BisI	GCNGC	5 cut(s)	76, 363, 366, 752, 878
BlsI	GCNGC	5 cut(s)	77, 364, 367, 753, 879
BmcAI	AGTACT	1 cut(s)	460
Bme1390I	CCNGG	6 cut(s)	167, 506, 536, 629, 915, 916
Bme18I	GGWCC	1 cut(s)	823
BmeT110I	CYCGRG	1 cut(s)	914
BmgBI	CACGTC	1 cut(s)	676
BmgT120I	GGNCC	4 cut(s)	107, 502, 580, 823
BmiI	GGNNCC	2 cut(s)	533, 825
BmrFI	CCNGG	6 cut(s)	167, 506, 536, 629, 915, 916
BmsI	GCATC	2 cut(s)	155, 267
BmtI	GCTAGC	1 cut(s)	890
BpmI	CTGGAG	2 cut(s)	557, 611
Bpu10I	CCTNAGC	1 cut(s)	302
BpuEI	CTTGAG	3 cut(s)	176, 362, 866
BpuMI	CCSGG	3 cut(s)	167, 915, 916
BsaAI	YACGTR	1 cut(s)	469
BsaJI	CCNNGG	5 cut(s)	504, 666, 849, 914, 915
BsaWI	WCCGGW	2 cut(s)	122, 216
Bsc4I	CCNNNNNNNGG	3 cut(s)	122, 511, 775
Bse118I	RCCGGY	1 cut(s)	306
Bse3DI	GCAATG	2 cut(s)	261, 827
BseBI	CCWGG	3 cut(s)	506, 536, 629
BseDI	CCNNGG	5 cut(s)	504, 666, 849, 914, 915
BseGI	GGATG	5 cut(s)	57, 146, 571, 637, 910
BseLI	CCNNNNNNNGG	3 cut(s)	122, 511, 775
BseMI	GCAATG	2 cut(s)	261, 827
BseMII	CTCAG	1 cut(s)	316
BseXI	GCAGC	4 cut(s)	62, 349, 738, 864
BsgI	GTGCAG	2 cut(s)	35, 888
BshFI	GGCC	5 cut(s)	20, 108, 503, 581, 724
BsiHKCI	CYCGRG	1 cut(s)	914
BsiSI	CCGG	5 cut(s)	123, 167, 217, 307, 915
BslI	CCNNNNNNNGG	3 cut(s)	122, 511, 775
BsnI	GGCC	5 cut(s)	20, 108, 503, 581, 724
BsoBI	CYCGRG	1 cut(s)	914
Bsp1286I	GDGCHC	1 cut(s)	787
Bsp143I	GATC	5 cut(s)	97, 169, 285, 388, 797
BspACI	CCGC	2 cut(s)	365, 489
BspANI	GGCC	5 cut(s)	20, 108, 503, 581, 724
BspCNI	CTCAG	1 cut(s)	315
BspHI	TCATGA	1 cut(s)	930
BspLI	GGNNCC	2 cut(s)	533, 825
BspMAI	CTGCAG	1 cut(s)	80
BspMI	ACCTGC	1 cut(s)	206
BspOI	GCTAGC	1 cut(s)	890
BspPI	GGATC	2 cut(s)	177, 805
BspQI	GCTCTTC	1 cut(s)	867
BsrBI	CCGCTC	1 cut(s)	489
BsrDI	GCAATG	2 cut(s)	261, 827
BsrFI	RCCGGY	1 cut(s)	306
BssAI	RCCGGY	1 cut(s)	306
BssECI	CCNNGG	5 cut(s)	504, 666, 849, 914, 915
BssMI	GATC	5 cut(s)	97, 169, 285, 388, 797
BssSI	CACGAG	1 cut(s)	245
BssT1I	CCWWGG	2 cut(s)	666, 849
Bst2BI	CACGAG	1 cut(s)	245
Bst2UI	CCWGG	3 cut(s)	506, 536, 629
Bst4CI	ACNGT	2 cut(s)	92, 463
Bst6I	CTCTTC	2 cut(s)	735, 867
BstBAI	YACGTR	1 cut(s)	469
BstC8I	GCNNGC	4 cut(s)	18, 448, 764, 888
BstDEI	CTNAG	1 cut(s)	302
BstF5I	GGATG	5 cut(s)	57, 146, 571, 637, 910
BstH2I	RGCGCY	1 cut(s)	254
BstHHI	GCGC	2 cut(s)	253, 446
BstKTI	GATC	5 cut(s)	100, 172, 288, 391, 800
BstMBI	GATC	5 cut(s)	97, 169, 285, 388, 797
BstMWI	GCNNNNNNNGC	2 cut(s)	371, 883
BstNI	CCWGG	3 cut(s)	506, 536, 629
BstSCI	CCNGG	6 cut(s)	165, 504, 534, 627, 913, 914
BstSFI	CTRYAG	2 cut(s)	60, 76
BstV1I	GCAGC	4 cut(s)	62, 349, 738, 864
BstX2I	RGATCY	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	169
BsuRI	GGCC	5 cut(s)	20, 108, 503, 581, 724
BtrI	CACGTC	1 cut(s)	676
BtsCI	GGATG	5 cut(s)	57, 146, 571, 637, 910
BveI	ACCTGC	1 cut(s)	206
Cac8I	GCNNGC	4 cut(s)	18, 448, 764, 888
CaiI	CAGNNNCTG	1 cut(s)	110
CciI	TCATGA	1 cut(s)	930
CfoI	GCGC	2 cut(s)	253, 446
Cfr10I	RCCGGY	1 cut(s)	306
Cfr13I	GGNCC	4 cut(s)	107, 502, 580, 823
Cfr9I	CCCGGG	1 cut(s)	914
CseI	GACGC	1 cut(s)	967
Csp6I	GTAC	5 cut(s)	88, 238, 269, 459, 466
CviAII	CATG	6 cut(s)	480, 520, 584, 649, 736, 931
CviQI	GTAC	5 cut(s)	88, 238, 269, 459, 466
DdeI	CTNAG	1 cut(s)	302
DpnI	GATC	5 cut(s)	99, 171, 287, 390, 799
DpnII	GATC	5 cut(s)	97, 169, 285, 388, 797
Eam1104I	CTCTTC	2 cut(s)	735, 867
EarI	CTCTTC	2 cut(s)	735, 867
Eco130I	CCWWGG	2 cut(s)	666, 849
Eco24I	GRGCYC	1 cut(s)	787
Eco32I	GATATC	1 cut(s)	222
Eco47I	GGWCC	1 cut(s)	823
Eco57I	CTGAAG	1 cut(s)	406
Eco88I	CYCGRG	1 cut(s)	914
EcoO109I	RGGNCCY	2 cut(s)	107, 502
EcoRII	CCWGG	3 cut(s)	504, 534, 627
EcoRV	GATATC	1 cut(s)	222
EcoT14I	CCWWGG	2 cut(s)	666, 849
EcoT22I	ATGCAT	2 cut(s)	148, 481
EcoT38I	GRGCYC	1 cut(s)	787
ErhI	CCWWGG	2 cut(s)	666, 849
FaeI	CATG	6 cut(s)	483, 523, 587, 652, 739, 934
FalI	AAGNNNNNCTT	2 cut(s)	875, 907
FatI	CATG	6 cut(s)	479, 519, 583, 648, 735, 930
FauI	CCCGC	1 cut(s)	482
FbaI	TGATCA	2 cut(s)	285, 388
FblI	GTMKAC	1 cut(s)	672
Fnu4HI	GCNGC	5 cut(s)	76, 363, 366, 752, 878
FokI	GGATG	5 cut(s)	64, 133, 578, 644, 897
FriOI	GRGCYC	1 cut(s)	787
Fsp4HI	GCNGC	5 cut(s)	76, 363, 366, 752, 878
FspBI	CTAG	6 cut(s)	281, 414, 606, 773, 864, 887
GlaI	GCGC	2 cut(s)	252, 445
GluI	GCNGC	5 cut(s)	76, 363, 366, 752, 878
GsuI	CTGGAG	2 cut(s)	557, 611
HaeII	RGCGCY	1 cut(s)	254
HaeIII	GGCC	5 cut(s)	20, 108, 503, 581, 724
HapII	CCGG	5 cut(s)	123, 167, 217, 307, 915
HgaI	GACGC	1 cut(s)	967
HhaI	GCGC	2 cut(s)	253, 446
Hin1II	CATG	6 cut(s)	483, 523, 587, 652, 739, 934
Hin6I	GCGC	2 cut(s)	251, 444
HinP1I	GCGC	2 cut(s)	251, 444
HinfI	GANTC	3 cut(s)	55, 732, 803
HpaII	CCGG	5 cut(s)	123, 167, 217, 307, 915
HphI	GGTGA	2 cut(s)	304, 614
Hpy166II	GTNNAC	5 cut(s)	212, 312, 466, 622, 673
Hpy188I	TCNGA	3 cut(s)	134, 388, 802
Hpy188III	TCNNGA	9 cut(s)	95, 116, 193, 347, 379, 512, 812, 821, 931
Hpy8I	GTNNAC	5 cut(s)	212, 312, 466, 622, 673
HpyAV	CCTTC	3 cut(s)	65, 430, 558
HpyCH4III	ACNGT	2 cut(s)	92, 463
HpyCH4IV	ACGT	3 cut(s)	240, 468, 675
HpyF10VI	GCNNNNNNNGC	2 cut(s)	371, 883
HpyF3I	CTNAG	1 cut(s)	302
HpySE526I	ACGT	3 cut(s)	240, 468, 675
Hsp92II	CATG	6 cut(s)	483, 523, 587, 652, 739, 934
HspAI	GCGC	2 cut(s)	251, 444
Ksp22I	TGATCA	2 cut(s)	285, 388
Kzo9I	GATC	5 cut(s)	97, 169, 285, 388, 797
LguI	GCTCTTC	1 cut(s)	867
LmnI	GCTCC	1 cut(s)	919
Lsp1109I	GCAGC	4 cut(s)	62, 349, 738, 864
LweI	GCATC	2 cut(s)	155, 267
MaeI	CTAG	6 cut(s)	281, 414, 606, 773, 864, 887
MaeII	ACGT	3 cut(s)	240, 468, 675
MaeIII	GTNAC	1 cut(s)	705
MalI	GATC	5 cut(s)	99, 171, 287, 390, 799
MbiI	CCGCTC	1 cut(s)	489
MboI	GATC	5 cut(s)	97, 169, 285, 388, 797
MboII	GAAGA	2 cut(s)	752, 884
MflI	RGATCY	1 cut(s)	169
MhlI	GDGCHC	1 cut(s)	787
MluCI	AATT	2 cut(s)	82, 494
MlyI	GAGTC	1 cut(s)	726
MmeI	TCCRAC	2 cut(s)	57, 543
MnlI	CCTC	7 cut(s)	311, 375, 571, 635, 645, 853, 931
Mph1103I	ATGCAT	2 cut(s)	148, 481
MseI	TTAA	1 cut(s)	497
MslI	CAYNNNNRTG	2 cut(s)	317, 588
MspI	CCGG	5 cut(s)	123, 167, 217, 307, 915
MspR9I	CCNGG	6 cut(s)	167, 506, 536, 629, 915, 916
MvaI	CCWGG	3 cut(s)	506, 536, 629
MwoI	GCNNNNNNNGC	2 cut(s)	371, 883
NciI	CCSGG	3 cut(s)	167, 915, 916
NdeII	GATC	5 cut(s)	97, 169, 285, 388, 797
NheI	GCTAGC	1 cut(s)	886
NlaIII	CATG	6 cut(s)	483, 523, 587, 652, 739, 934
NlaIV	GGNNCC	2 cut(s)	533, 825
NsiI	ATGCAT	2 cut(s)	148, 481
PagI	TCATGA	1 cut(s)	930
PciSI	GCTCTTC	1 cut(s)	867
PfeI	GAWTC	2 cut(s)	55, 803
PflMI	CCANNNNNTGG	1 cut(s)	775
PfoI	TCCNGGA	1 cut(s)	627
PkrI	GCNGC	5 cut(s)	77, 364, 367, 753, 879
PleI	GAGTC	1 cut(s)	726
PpsI	GAGTC	1 cut(s)	726
Ppu21I	YACGTR	1 cut(s)	469
Psp6I	CCWGG	3 cut(s)	504, 534, 627
PspGI	CCWGG	3 cut(s)	504, 534, 627
PspN4I	GGNNCC	2 cut(s)	533, 825
PspPI	GGNCC	4 cut(s)	107, 502, 580, 823
PstI	CTGCAG	1 cut(s)	80
PstNI	CAGNNNCTG	1 cut(s)	110
PsuI	RGATCY	1 cut(s)	169
RsaI	GTAC	5 cut(s)	89, 239, 270, 460, 467
RsaNI	GTAC	5 cut(s)	88, 238, 269, 459, 466
RseI	CAYNNNNRTG	2 cut(s)	317, 588
SapI	GCTCTTC	1 cut(s)	867
SaqAI	TTAA	1 cut(s)	497
SatI	GCNGC	5 cut(s)	76, 363, 366, 752, 878
Sau3AI	GATC	5 cut(s)	97, 169, 285, 388, 797
Sau96I	GGNCC	4 cut(s)	107, 502, 580, 823
ScaI	AGTACT	1 cut(s)	460
SchI	GAGTC	1 cut(s)	726
ScrFI	CCNGG	6 cut(s)	167, 506, 536, 629, 915, 916
SduI	GDGCHC	1 cut(s)	787
SfaNI	GCATC	2 cut(s)	155, 267
SfcI	CTRYAG	2 cut(s)	60, 76
SinI	GGWCC	1 cut(s)	823
SmaI	CCCGGG	1 cut(s)	916
SmiMI	CAYNNNNRTG	2 cut(s)	317, 588
SmlI	CTYRAG	3 cut(s)	191, 377, 881
SmoI	CTYRAG	3 cut(s)	191, 377, 881
SpeI	ACTAGT	2 cut(s)	413, 772
Sse9I	AATT	2 cut(s)	82, 494
SsiI	CCGC	2 cut(s)	365, 489
SspMI	CTAG	6 cut(s)	281, 414, 606, 773, 864, 887
StyD4I	CCNGG	6 cut(s)	165, 504, 534, 627, 913, 914
StyI	CCWWGG	2 cut(s)	666, 849
TaaI	ACNGT	2 cut(s)	92, 463
TaiI	ACGT	3 cut(s)	243, 471, 678
TasI	AATT	2 cut(s)	82, 494
TatI	WGTACW	3 cut(s)	87, 268, 458
TauI	GCSGC	1 cut(s)	368
TfiI	GAWTC	2 cut(s)	55, 803
Tru1I	TTAA	1 cut(s)	497
Tru9I	TTAA	1 cut(s)	497
TseI	GCWGC	4 cut(s)	75, 362, 751, 877
TspDTI	ATGAA	1 cut(s)	947
TspMI	CCCGGG	1 cut(s)	914
Van91I	CCANNNNNTGG	1 cut(s)	775
VpaK11BI	GGWCC	1 cut(s)	823
XapI	RAATTY	1 cut(s)	82
XmaI	CCCGGG	1 cut(s)	914
XmiI	GTMKAC	1 cut(s)	672
XspI	CTAG	6 cut(s)	281, 414, 606, 773, 864, 887
ZrmI	AGTACT	1 cut(s)	460
Zsp2I	ATGCAT	2 cut(s)	148, 481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.