Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0008065

Physical Location & Seq

Genomic Coordinates Reverse (-)

9687423 .. 9690910

Gene Structure 3488 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G009030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3288 bp

ATGGAGTCTCATAGAGTCAGTTTGGTCATAGTCATAGTCTGTTCTGTTCTACTTGCTGGTCTGTCTGCTCAGCCAAGCTTGGAGGTTGAAGTCGAGGCCTTGAAGGCGTTCAAGAAATCCATCACCAGCGACCCGAATGGAACACTTGCAGATTGGACGTCAGACGCAAGCCATCACTGCAATTGGTCTGGCGAAAAGCAGCTCACAGGCGTGATCTCACCCTTCCTCGGAAACATTTCAGGCCTCCAGGTTCTTGATCTAACTTCAAACTCATTCACTGGACATATTCCAGCTGAGCTGGGACTTTGCTCCCAACTTTCTCTACTTGCTCTGTATCAAAATTCTCTTTCGGGTTCAATTCCACCAGAACTAGGAAACCTTAGTAATCTGCAGTTATTAGATTTGGGTGATAACCTTTTGAGTGGAAGAATGCCGGAGAGCATTTGCAACTGTAGCAACTTGTCTTTGTTTGGTGCGGAATTTAATAACCTCACTGGCAAACTCCCATCAAACATAGGAAATCTTGTTAATCTTGAGCTTCTTATAGCAAGTGGCAACAACTTTGTAGGCTCATTACCTGCTTCCATGGGTAAGTTGGCAGCTTTCAAAGAGGTTGATTTAAGTAAAAACCAGTTGTCCGGTGCAATACCTAGGGAGCTAGGGAATCTGTCAAATTTAGAACAACTGGTAGTGTTTGATAATTCCTTTGTTGGGGAAATCCCTTCTGAACTAAGTCGGTGTAAGAAGCTTGTTAACCTTGAACTTTACGAGAATCATTTCACCAGAAGCATTCCCTCTGAGCTTGGAAGTTTGGTTCATCTAGAAACATTGAGATTGTACAAGAATAGGCTAAACTCTACAATTCCACTCTCCATTTTTCAGCTGAAATCATTAACCCATTTAGGACTTTCAGAAAATGAGTTAACTGGGACAATACCATCCGAGCTTGGATCTTTAAGATCATTGCAAGTATTGACCCTGCACTCCAATAAGTTTACCGGAGAGATCCCCTCATCCTTGACAAGCTTGACAAATCTAACATATCTGTCAATGAGCTTAAATTCTCTAACAGGGGAACTTCCATCAAACATAGGGTTGCTTTATAATCTTAAAAACCTCTCCATGAATGGCAACCTTCTTGAGGGATCCATACCATCTAGTATCACCAACTGTACCAATCTTCAAGTTATAAGCTTGGCTTATAATAGAATAACTGGAAAAATACCTCAGGGTCTGGGGCAGTTGCCGAAGCTTAATTTCCTTTCTGTTGGATCCAATAAATTGTTCGGAGAAATCCCAGATGACCTCTTCAATTGCACTAGTCTTATCACTCTAGATTTGGGCCTGAACAACTTTAGTGGTTATCTGAAACCCGGATTTGGAAAACTTTCCAATCTCAGGGTTTTGAGAGCCACCTCCAATTCATTTGTCGGACAAATTCCACCAGAGAGTGGCCAACTAAACCAACTTATCATCCTCACACTTGCTGAGAATAGATTCTCAGGTCCAGTTCCACCACAGCTGTCTAATCTCTCTCACCTACAAGGGCTATCCCTACACGATAATGCTTTAGAAGGAGCCATCCCTGAGAAACTTTTTGAGCTAAAAGAGTTAACTGTTCTAGAGTTGCTGCAAAACAAACTGACCGGTCCAATTCCAGATACTGTCTCAAAACTTGAGTTGCTTTCATACTTAAACCTCCAAGGTAATATGCTCAATGGTTCCATTCCGAAAAGCATGGCTCACCTTAATCGGCTAACAACTCTGGATCTCTCTCACAATCATCTCTCAGGACCCATTCCAGGGTCTGTGATCTCAGGGATGAAAAGCATGCAGATATATTTGAATTTCTCATACAATTTCTTGGATGGCAGCATTCCAGACGAGCTTGGCATGTTGGAAATGGTGCAGGCCATTGACATTTCCAACAATAATCTTTCAGGGATGATTCCTGTAGCAGTAGAAGGCTGCAGGAATTTGTACTCTCTTGATCTGTCAGGTAACAAACTTTCTGGGCCAATTCAAGCTGAAGTTTTTGCTAAGATGGACACCTTCACAAGCTTGAACCTTTCAAGGAATCACTTAGATGGTGAACTCCCAGAAAAGTTGACAAATCTGAAGCATCTTAGCTCCCTTGATCTTTCCCAGAATTGTCTGAGGGGAGTTATCCGTGAGAGCTTTACCAATTTTACCAGCTTGAAACACTTGAACCTCTCTTTCAATCAACTTGAAGGCCCTGTTCCAGACACCGGATTATTCAGAAGTATAAATGCATCCAGCTTGGTAGGAAACCCGGATCTCTGTGGAAACAAACTGCTCAAGACATGCAAGAAAAGTTCACACCGGATATCCAAGACAACCATGTATGTTCTCGCGGCGCTTGGAATAATTTCTCTATTGCTTATTTTAGTGATCATTTTCCTAATCCGCAGCCGGTTCACCAAAATGTGTAAGCCAGAAAAGATTGAAAATCCAGAACCAGAGTGTGCTGCAGCTTTGGCACTCAAGAGGTTTGATCAAAAGGATTTAGAAAATGCCACTAGTTTCTTTAGCAAAGAGAACATTTTAGGCACAAGCAGGTTGAGTACTGTGTACAAGGGTCAACTGGAAGATGAGCAGATAGTAGCCATAAAGAGATTGAATCTCCAGGAATTCTCAGTTGAGTCAGATAAATGCTTCAATAGAGAAATCAAGACACTGAGTCAACTAAGGCACAGGAATTTGGTGAAGGTACTTGGCTATGCATGGGAGAGCGGGAAATTAAAGGCCTTGGTTCTGGAATACATGGAGAATGGAAACCTGGAGAACATTATACATGAAGATGGGATGAATCAGTGGAGATTGACATTCTCTCAGAGAATCAATATTTTAATCTCTATAGCAAGTGGACTGGATTACCTGCATTCAGGATATGATTTTCCCATCGTTCATTGCGACTTGAAGCCTTCTAACATCTTGTTGGATGAGGATTGGGAGGCCCATGTGAGTGATTTTGGAACAGCTAGAATGTTGGGTGTTCATCTCCAGGATGGGAGTAGCCTTTCCACGGCATCAGCTTTCCAAGGCACAATTGGCTACTTAGCACCAGAGTTTGCATACATGAGGAAAATCACAACCAAGGTAGACGTCTTCAGCTTTGGTGTAATAGTGATGGAGTTACTGACAAGACAAAGGCCAACAGGACTCATGGAAGGAAATGGGCTGCCAATGAGCTTGCACCAAGTAGTGGAGAAAGCCCTTGCAGATGGATCAGATTCGCTTCTTTTGAAGCTGAAAAAGGCAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0006898 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009595 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010359 GO:0012505 GO:0016020 GO:0016043 GO:0016045 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022898 GO:0023052 GO:0031410 GO:0031982 GO:0032409 GO:0032412 GO:0032879 GO:0033036 GO:0033037 GO:0033554 GO:0034762 GO:0034765 GO:0036211 GO:0038023 GO:0042545 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043269 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051606 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0060089 GO:0065007 GO:0065009 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098542 GO:0098543 GO:0098581 GO:0098657 GO:0140096 GO:1901564 GO:1903959

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

1095

Amino Acids

119.7

Weight (kDa)

5.99

Isoelectric Point (pI)

28.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	30 - 64	2e-08	Leucine rich repeat N-terminal domain
LRR_14	PF23598	166 - 256	9.6e-07	Leucine-rich repeat region
LRR_14	PF23598	251 - 355	7.2e-11	Leucine-rich repeat region
LRR_8	PF13855	273 - 332	5.3e-07	Leucine rich repeat
LRR_14	PF23598	301 - 375	4.4e-07	Leucine-rich repeat region
LRR_14	PF23598	363 - 472	1.5e-07	Leucine-rich repeat region
LRR_8	PF13855	369 - 428	2.9e-07	Leucine rich repeat
LRR_14	PF23598	456 - 544	7.1e-06	Leucine-rich repeat region
LRR_8	PF13855	512 - 572	3.9e-06	Leucine rich repeat
LRR_8	PF13855	537 - 596	7.3e-08	Leucine rich repeat
LRR_8	PF13855	637 - 695	8.4e-08	Leucine rich repeat
LRR_8	PF13855	686 - 743	5.7e-09	Leucine rich repeat
Pkinase	PF00069	851 - 1063	6.4e-42	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	853 - 1059	8.6e-36	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0008065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46330 AT5G46330
fragaria_vesca	FvH4_3g06100
malus_domestica	MD05G1289000.v1.1
prunus_persica	Prupe.4G076500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0013311
rosa_laevigata	RLG00000032007 RLG00000032011
rosa_multiflora	Rmu_co8051088.1_g000001 Rmu_sc0003458.1_g000007 Rmu_sc0003458.1_g000011 Rmu_sc0004521.1_g000021 Rmu_sc0007948.1_g000008
rosa_roxburghii	Rroxscaffold_1G00063230
rosa_rugosa	Rorug05G0008800
rosa_samantha	Rh5AG103400 Rh5AG103500 Rh5AG104200 Rh5BG100200 Rh5CG111400 Rh5CG111800 Rh5DG099000
rosa_wichuraiana	Rw5G009030 Rw5G009070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1104, 1190, 1203
AatII	GACGTC	2 cut(s)	161, 3129
Acc36I	ACCTGC	3 cut(s)	586, 2568, 2907
AccB7I	CCANNNNNTGG	2 cut(s)	1451, 3226
AccBSI	CCGCTC	1 cut(s)	2754
AccI	GTMKAC	1 cut(s)	3123
AccII	CGCG	1 cut(s)	2375
AciI	CCGC	4 cut(s)	476, 2375, 2428, 2754
AclWI	GGATC	9 cut(s)	958, 1000, 1140, 1153, 1266, 1279, 1776, 2304, 3256
AcoI	YGGCCR	1 cut(s)	1453
AcsI	RAATTY	9 cut(s)	340, 479, 673, 1060, 1437, 1846, 1975, 2651, 2719
AcuI	CTGAAG	3 cut(s)	2049, 2138, 3115
AcyI	GRCGYC	2 cut(s)	158, 3126
AfaI	GTAC	6 cut(s)	839, 1174, 1982, 2587, 2594, 2733
AgeI	ACCGGT	1 cut(s)	1646
AhdI	GACNNNNNGTC	1 cut(s)	2700
AhlI	ACTAGT	2 cut(s)	1319, 2540
AjnI	CCWGG	5 cut(s)	246, 1801, 2646, 2799, 3024
AjuI	GAANNNNNNNTTGG	2 cut(s)	1268, 1300
AleI	CACNNNNGTG	1 cut(s)	209
AloI	GAACNNNNNNTCC	2 cut(s)	798, 830
Alw26I	GTCTC	2 cut(s)	12, 1672
AlwI	GGATC	9 cut(s)	958, 1000, 1140, 1153, 1266, 1279, 1776, 2304, 3256
AlwNI	CAGNNNCTG	3 cut(s)	1234, 1664, 1808
ApeKI	GCWGC	9 cut(s)	199, 599, 1630, 1872, 1968, 2430, 2489, 2492, 3202
ApoI	RAATTY	9 cut(s)	340, 479, 673, 1060, 1437, 1846, 1975, 2651, 2719
AsiGI	ACCGGT	1 cut(s)	1646
Asp700I	GAANNNNTTC	6 cut(s)	107, 235, 776, 1387, 1496, 2389
AspA2I	CCTAGG	1 cut(s)	650
AspLEI	GCGC	1 cut(s)	2380
AspS9I	GGNCC	7 cut(s)	1342, 1505, 1649, 1793, 2015, 2234, 2977
AsuC2I	CCSGG	2 cut(s)	1374, 2294
AvaII	GGWCC	3 cut(s)	1505, 1649, 1793
AvrII	CCTAGG	1 cut(s)	650
AxyI	CCTNAGG	1 cut(s)	1227
BalI	TGGCCA	1 cut(s)	1455
BamHI	GGATCC	2 cut(s)	1145, 1271
BbsI	GAAGAC	1 cut(s)	3121
BbvI	GCAGC	9 cut(s)	211, 611, 1617, 1884, 1955, 2442, 2476, 2504, 3189
BceAI	ACGGC	1 cut(s)	3063
BciT130I	CCWGG	5 cut(s)	248, 1803, 2648, 2801, 3026
BclI	TGATCA	2 cut(s)	2412, 2515
BcnI	CCSGG	2 cut(s)	1374, 2294
BcoDI	GTCTC	2 cut(s)	12, 1672
BcuI	ACTAGT	2 cut(s)	1319, 2540
BfmI	CTRYAG	6 cut(s)	389, 451, 1953, 1969, 2490, 2877
BfoI	RGCGCY	1 cut(s)	2381
BfuAI	ACCTGC	3 cut(s)	586, 2568, 2907
BglI	GCCNNNNNGGC	1 cut(s)	104
BlnI	CCTAGG	1 cut(s)	650
BlpI	GCTNAGC	2 cut(s)	69, 294
BmcAI	AGTACT	1 cut(s)	2587
Bme1390I	CCNGG	7 cut(s)	248, 1374, 1803, 2294, 2648, 2801, 3026
Bme18I	GGWCC	3 cut(s)	1505, 1649, 1793
BmeRI	GACNNNNNGTC	1 cut(s)	2700
BmgT120I	GGNCC	7 cut(s)	1342, 1505, 1649, 1793, 2015, 2234, 2977
BmiI	GGNNCC	5 cut(s)	1147, 1273, 1579, 1723, 1795
BmrFI	CCNGG	7 cut(s)	248, 1374, 1803, 2294, 2648, 2801, 3026
BmrI	ACTGGG	1 cut(s)	936
BmsI	GCATC	3 cut(s)	2131, 2282, 3059
BmuI	ACTGGG	1 cut(s)	936
BpiI	GAAGAC	1 cut(s)	3121
BplI	GAGNNNNNCTC	2 cut(s)	995, 1027
BpmI	CTGGAG	4 cut(s)	230, 2630, 2822, 3008
Bpu1102I	GCTNAGC	2 cut(s)	69, 294
BpuEI	CTTGAG	5 cut(s)	554, 1160, 1697, 2303, 2489
BpuMI	CCSGG	2 cut(s)	1374, 2294
BsaHI	GRCGYC	2 cut(s)	158, 3126
BsaJI	CCNNGG	9 cut(s)	226, 585, 650, 1702, 1802, 2769, 3045, 3061, 3117
BsaWI	WCCGGW	5 cut(s)	638, 998, 1646, 2249, 2343
Bse118I	RCCGGY	2 cut(s)	1646, 2433
Bse1I	ACTGG	9 cut(s)	283, 499, 631, 690, 931, 1219, 1508, 2610, 2895
Bse21I	CCTNAGG	1 cut(s)	1227
Bse3DI	GCAATG	2 cut(s)	962, 2929
BseBI	CCWGG	5 cut(s)	248, 1803, 2648, 2801, 3026
BseDI	CCNNGG	9 cut(s)	226, 585, 650, 1702, 1802, 2769, 3045, 3061, 3117
BseMI	GCAATG	2 cut(s)	962, 2929
BseNI	ACTGG	9 cut(s)	283, 499, 631, 690, 931, 1219, 1508, 2610, 2895
BseXI	GCAGC	9 cut(s)	211, 611, 1617, 1884, 1955, 2442, 2476, 2504, 3189
BseYI	CCCAGC	1 cut(s)	298
BsgI	GTGCAG	2 cut(s)	965, 1928
Bsh1236I	CGCG	1 cut(s)	2375
BshTI	ACCGGT	1 cut(s)	1646
BsiSI	CCGG	9 cut(s)	434, 639, 999, 1374, 1647, 2250, 2294, 2344, 2434
BslFI	GGGAC	2 cut(s)	315, 943
BsmAI	GTCTC	2 cut(s)	12, 1672
BsmFI	GGGAC	2 cut(s)	315, 943
BsmI	GAATGC	4 cut(s)	435, 789, 1875, 2902
Bsp1407I	TGTACA	2 cut(s)	837, 2592
Bsp1720I	GCTNAGC	2 cut(s)	69, 294
Bsp19I	CCATGG	1 cut(s)	585
BspACI	CCGC	4 cut(s)	476, 2375, 2428, 2754
BspFNI	CGCG	1 cut(s)	2375
BspLI	GGNNCC	5 cut(s)	1147, 1273, 1579, 1723, 1795
BspMAI	CTGCAG	3 cut(s)	393, 1973, 2494
BspMI	ACCTGC	3 cut(s)	586, 2568, 2907
BspPI	GGATC	9 cut(s)	958, 1000, 1140, 1153, 1266, 1279, 1776, 2304, 3256
BsrBI	CCGCTC	1 cut(s)	2754
BsrDI	GCAATG	2 cut(s)	962, 2929
BsrFI	RCCGGY	2 cut(s)	1646, 2433
BsrGI	TGTACA	2 cut(s)	837, 2592
BsrI	ACTGG	9 cut(s)	283, 499, 631, 690, 931, 1219, 1508, 2610, 2895
BssAI	RCCGGY	2 cut(s)	1646, 2433
BssECI	CCNNGG	9 cut(s)	226, 585, 650, 1702, 1802, 2769, 3045, 3061, 3117
BssNI	GRCGYC	2 cut(s)	158, 3126
BssT1I	CCWWGG	6 cut(s)	585, 650, 1702, 2769, 3061, 3117
Bst2UI	CCWGG	5 cut(s)	248, 1803, 2648, 2801, 3026
Bst4CI	ACNGT	5 cut(s)	452, 1172, 1618, 1666, 2590
Bst6I	CTCTTC	1 cut(s)	1313
BstACI	GRCGYC	2 cut(s)	158, 3126
BstAUI	TGTACA	2 cut(s)	837, 2592
BstC8I	GCNNGC	4 cut(s)	169, 1832, 1911, 3215
BstDSI	CCRYGG	2 cut(s)	585, 3045
BstENI	CCTNNNNNAGG	1 cut(s)	1139
BstFNI	CGCG	1 cut(s)	2375
BstH2I	RGCGCY	1 cut(s)	2381
BstHHI	GCGC	1 cut(s)	2380
BstMAI	GTCTC	2 cut(s)	12, 1672
BstMWI	GCNNNNNNNGC	5 cut(s)	104, 177, 453, 2498, 3072
BstNI	CCWGG	5 cut(s)	248, 1803, 2648, 2801, 3026
BstNSI	RCATGY	3 cut(s)	1834, 1897, 2328
BstSCI	CCNGG	7 cut(s)	246, 1372, 1801, 2292, 2646, 2799, 3024
BstSFI	CTRYAG	6 cut(s)	389, 451, 1953, 1969, 2490, 2877
BstUI	CGCG	1 cut(s)	2375
BstV1I	GCAGC	9 cut(s)	211, 611, 1617, 1884, 1955, 2442, 2476, 2504, 3189
BstV2I	GAAGAC	1 cut(s)	3121
BstX2I	RGATCY	6 cut(s)	950, 1005, 1145, 1271, 1768, 2296
BstYI	RGATCY	6 cut(s)	950, 1005, 1145, 1271, 1768, 2296
Bsu36I	CCTNAGG	1 cut(s)	1227
BtgI	CCRYGG	2 cut(s)	585, 3045
BtsI	GCAGTG	1 cut(s)	175
BtsIMutI	CAGTG	5 cut(s)	175, 276, 492, 2696, 2840
BveI	ACCTGC	3 cut(s)	586, 2568, 2907
Cac8I	GCNNGC	4 cut(s)	169, 1832, 1911, 3215
CaiI	CAGNNNCTG	3 cut(s)	1234, 1664, 1808
CfoI	GCGC	1 cut(s)	2380
Cfr10I	RCCGGY	2 cut(s)	1646, 2433
Cfr13I	GGNCC	7 cut(s)	1342, 1505, 1649, 1793, 2015, 2234, 2977
CseI	GACGC	1 cut(s)	173
Csp6I	GTAC	6 cut(s)	838, 1173, 1981, 2586, 2593, 2732
CspAI	ACCGGT	1 cut(s)	1646
CspCI	CAANNNNNGTGG	2 cut(s)	1339, 1374
CviQI	GTAC	6 cut(s)	838, 1173, 1981, 2586, 2593, 2732
DriI	GACNNNNNGTC	1 cut(s)	2700
EaeI	YGGCCR	1 cut(s)	1453
Eam1104I	CTCTTC	1 cut(s)	1313
Eam1105I	GACNNNNNGTC	1 cut(s)	2700
EarI	CTCTTC	1 cut(s)	1313
Eco130I	CCWWGG	6 cut(s)	585, 650, 1702, 2769, 3061, 3117
Eco147I	AGGCCT	3 cut(s)	98, 243, 2768
Eco32I	GATATC	1 cut(s)	2349
Eco47I	GGWCC	3 cut(s)	1505, 1649, 1793
Eco57I	CTGAAG	3 cut(s)	2049, 2138, 3115
Eco81I	CCTNAGG	1 cut(s)	1227
EcoNI	CCTNNNNNAGG	1 cut(s)	1139
EcoO109I	RGGNCCY	2 cut(s)	1793, 2234
EcoRI	GAATTC	1 cut(s)	2651
EcoRII	CCWGG	5 cut(s)	246, 1801, 2646, 2799, 3024
EcoRV	GATATC	1 cut(s)	2349
EcoT14I	CCWWGG	6 cut(s)	585, 650, 1702, 2769, 3061, 3117
EcoT22I	ATGCAT	2 cut(s)	2275, 2746
ErhI	CCWWGG	6 cut(s)	585, 650, 1702, 2769, 3061, 3117
FalI	AAGNNNNNCTT	2 cut(s)	1183, 1215
FaqI	GGGAC	2 cut(s)	315, 943
FauI	CCCGC	1 cut(s)	2747
FbaI	TGATCA	2 cut(s)	2412, 2515
FblI	GTMKAC	1 cut(s)	3123
GlaI	GCGC	1 cut(s)	2379
GsaI	CCCAGC	1 cut(s)	302
GsuI	CTGGAG	4 cut(s)	230, 2630, 2822, 3008
HaeII	RGCGCY	1 cut(s)	2381
HapII	CCGG	9 cut(s)	434, 639, 999, 1374, 1647, 2250, 2294, 2344, 2434
HgaI	GACGC	1 cut(s)	173
HhaI	GCGC	1 cut(s)	2380
Hin1I	GRCGYC	2 cut(s)	158, 3126
Hin6I	GCGC	1 cut(s)	2378
HinP1I	GCGC	1 cut(s)	2378
HincII	GTYRAC	6 cut(s)	754, 924, 1614, 2109, 2603, 2705
HindII	GTYRAC	6 cut(s)	754, 924, 1614, 2109, 2603, 2705
HindIII	AAGCTT	6 cut(s)	76, 746, 1024, 1192, 1250, 2059
HpaI	GTTAAC	3 cut(s)	754, 924, 1614
HpaII	CCGG	9 cut(s)	434, 639, 999, 1374, 1647, 2250, 2294, 2344, 2434
HpyCH4III	ACNGT	5 cut(s)	452, 1172, 1618, 1666, 2590
HpyCH4IV	ACGT	2 cut(s)	158, 3126
HpyF10VI	GCNNNNNNNGC	5 cut(s)	104, 177, 453, 2498, 3072
HpySE526I	ACGT	2 cut(s)	158, 3126
Hsp92I	GRCGYC	2 cut(s)	158, 3126
HspAI	GCGC	1 cut(s)	2378
Ksp22I	TGATCA	2 cut(s)	2412, 2515
KspAI	GTTAAC	3 cut(s)	754, 924, 1614
LmnI	GCTCC	4 cut(s)	314, 655, 1577, 2135
Lsp1109I	GCAGC	9 cut(s)	211, 611, 1617, 1884, 1955, 2442, 2476, 2504, 3189
LweI	GCATC	3 cut(s)	2131, 2282, 3059
MaeII	ACGT	2 cut(s)	158, 3126
MaeIII	GTNAC	2 cut(s)	2000, 3156
MbiI	CCGCTC	1 cut(s)	2754
MboII	GAAGA	6 cut(s)	438, 1172, 1300, 2621, 2831, 3121
MfeI	CAATTG	3 cut(s)	181, 1312, 3069
MflI	RGATCY	6 cut(s)	950, 1005, 1145, 1271, 1768, 2296
MlsI	TGGCCA	1 cut(s)	1455
MluNI	TGGCCA	1 cut(s)	1455
MlyI	GAGTC	5 cut(s)	14, 24, 2672, 2710, 3177
MmeI	TCCRAC	5 cut(s)	1249, 1411, 1878, 1950, 2940
Mox20I	TGGCCA	1 cut(s)	1455
Mph1103I	ATGCAT	2 cut(s)	2275, 2746
MroXI	GAANNNNTTC	6 cut(s)	107, 235, 776, 1387, 1496, 2389
MscI	TGGCCA	1 cut(s)	1455
MslI	CAYNNNNRTG	6 cut(s)	209, 1563, 2085, 2444, 2820, 2985
Msp20I	TGGCCA	1 cut(s)	1455
MspA1I	CMGCKG	3 cut(s)	293, 883, 1522
MspI	CCGG	9 cut(s)	434, 639, 999, 1374, 1647, 2250, 2294, 2344, 2434
MspR9I	CCNGG	7 cut(s)	248, 1374, 1803, 2294, 2648, 2801, 3026
MunI	CAATTG	3 cut(s)	181, 1312, 3069
Mva1269I	GAATGC	4 cut(s)	435, 789, 1875, 2902
MvaI	CCWGG	5 cut(s)	248, 1803, 2648, 2801, 3026
MvnI	CGCG	1 cut(s)	2375
MwoI	GCNNNNNNNGC	5 cut(s)	104, 177, 453, 2498, 3072
NciI	CCSGG	2 cut(s)	1374, 2294
NcoI	CCATGG	1 cut(s)	585
NlaIV	GGNNCC	5 cut(s)	1147, 1273, 1579, 1723, 1795
NsiI	ATGCAT	2 cut(s)	2275, 2746
NspI	RCATGY	3 cut(s)	1834, 1897, 2328
OliI	CACNNNNGTG	1 cut(s)	209
PaeI	GCATGC	1 cut(s)	1834
PceI	AGGCCT	3 cut(s)	98, 243, 2768
PcsI	WCGNNNNNNNCGW	1 cut(s)	2931
PctI	GAATGC	4 cut(s)	435, 789, 1875, 2902
PdmI	GAANNNNTTC	6 cut(s)	107, 235, 776, 1387, 1496, 2389
PfeI	GAWTC	9 cut(s)	664, 772, 1497, 1948, 2077, 2641, 2830, 2859, 3254
PflMI	CCANNNNNTGG	2 cut(s)	1451, 3226
PfoI	TCCNGGA	2 cut(s)	2646, 3024
PinAI	ACCGGT	1 cut(s)	1646
PleI	GAGTC	5 cut(s)	13, 23, 2671, 2709, 3177
PpsI	GAGTC	5 cut(s)	13, 23, 2671, 2709, 3177
PpuMI	RGGWCCY	1 cut(s)	1793
PsiI	TTATAA	3 cut(s)	1104, 1190, 1203
Psp5II	RGGWCCY	1 cut(s)	1793
Psp6I	CCWGG	5 cut(s)	246, 1801, 2646, 2799, 3024
PspFI	CCCAGC	1 cut(s)	298
PspGI	CCWGG	5 cut(s)	246, 1801, 2646, 2799, 3024
PspN4I	GGNNCC	5 cut(s)	1147, 1273, 1579, 1723, 1795
PspPI	GGNCC	7 cut(s)	1342, 1505, 1649, 1793, 2015, 2234, 2977
PspPPI	RGGWCCY	1 cut(s)	1793
PstI	CTGCAG	3 cut(s)	393, 1973, 2494
PstNI	CAGNNNCTG	3 cut(s)	1234, 1664, 1808
PsuI	RGATCY	6 cut(s)	950, 1005, 1145, 1271, 1768, 2296
PvuII	CAGCTG	3 cut(s)	293, 883, 1522
RsaI	GTAC	6 cut(s)	839, 1174, 1982, 2587, 2594, 2733
RsaNI	GTAC	6 cut(s)	838, 1173, 1981, 2586, 2593, 2732
RseI	CAYNNNNRTG	6 cut(s)	209, 1563, 2085, 2444, 2820, 2985
Sau96I	GGNCC	7 cut(s)	1342, 1505, 1649, 1793, 2015, 2234, 2977
ScaI	AGTACT	1 cut(s)	2587
SchI	GAGTC	5 cut(s)	14, 24, 2672, 2710, 3177
ScrFI	CCNGG	7 cut(s)	248, 1374, 1803, 2294, 2648, 2801, 3026
SfaNI	GCATC	3 cut(s)	2131, 2282, 3059
SfcI	CTRYAG	6 cut(s)	389, 451, 1953, 1969, 2490, 2877
SinI	GGWCC	3 cut(s)	1505, 1649, 1793
SmiMI	CAYNNNNRTG	6 cut(s)	209, 1563, 2085, 2444, 2820, 2985
SmlI	CTYRAG	5 cut(s)	533, 1139, 1676, 2318, 2504
SmoI	CTYRAG	5 cut(s)	533, 1139, 1676, 2318, 2504
SpeI	ACTAGT	2 cut(s)	1319, 2540
SphI	GCATGC	1 cut(s)	1834
SseBI	AGGCCT	3 cut(s)	98, 243, 2768
SsiI	CCGC	4 cut(s)	476, 2375, 2428, 2754
SspI	AATATT	1 cut(s)	2866
StuI	AGGCCT	3 cut(s)	98, 243, 2768
StyD4I	CCNGG	7 cut(s)	246, 1372, 1801, 2292, 2646, 2799, 3024
StyI	CCWWGG	6 cut(s)	585, 650, 1702, 2769, 3061, 3117
TaaI	ACNGT	5 cut(s)	452, 1172, 1618, 1666, 2590
TaiI	ACGT	2 cut(s)	161, 3129
TaqI	TCGA	1 cut(s)	93
TatI	WGTACW	4 cut(s)	837, 1980, 2585, 2592
TauI	GCSGC	1 cut(s)	2378
TfiI	GAWTC	9 cut(s)	664, 772, 1497, 1948, 2077, 2641, 2830, 2859, 3254
TscAI	CASTG	5 cut(s)	182, 283, 499, 2703, 2840
TseI	GCWGC	9 cut(s)	199, 599, 1630, 1872, 1968, 2430, 2489, 2492, 3202
TspDTI	ATGAA	9 cut(s)	806, 1139, 1413, 1677, 1838, 2832, 2843, 2918, 3008
TspGWI	ACGGA	1 cut(s)	2159
TspRI	CASTG	5 cut(s)	182, 283, 499, 2703, 2840
Van91I	CCANNNNNTGG	2 cut(s)	1451, 3226
VpaK11BI	GGWCC	3 cut(s)	1505, 1649, 1793
XagI	CCTNNNNNAGG	1 cut(s)	1139
XapI	RAATTY	9 cut(s)	340, 479, 673, 1060, 1437, 1846, 1975, 2651, 2719
XbaI	TCTAGA	3 cut(s)	820, 1333, 1621
XceI	RCATGY	3 cut(s)	1834, 1897, 2328
XcmI	CCANNNNNNNNNTGG	2 cut(s)	592, 3068
XmaJI	CCTAGG	1 cut(s)	650
XmiI	GTMKAC	1 cut(s)	3123
XmnI	GAANNNNTTC	6 cut(s)	107, 235, 776, 1387, 1496, 2389
ZraI	GACGTC	2 cut(s)	159, 3127
ZrmI	AGTACT	1 cut(s)	2587
Zsp2I	ATGCAT	2 cut(s)	2275, 2746

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.