Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0008065

Physical Location & Seq

Genomic Coordinates Reverse (-)

9156965 .. 9161100

Gene Structure 4136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG100200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3474 bp

ATGGAGTCTCATAGAGTCAGTTTGGTCATAGTCATAGTCTGTTCTGTTCTACTTGCTGGTCTGTCTGCTCAGCCAAGCTTGGAGGTTGAAGTCGAGGCCTTGAAGGCGTTCAAGAAATCCATCACCAGCGACCCGAATGGAACACTTGCAGATTGGACGTCAGACGCAAGCCATCACTGCAATTGGTCTGGCATTGCCTGTGACCCCTCAACAAATCAAGTCATTTCAATTTCTCTGGCGGAAAAGCAGCTCACAGGCGTGGTCTCACCCTTCCTCGGAAACATTTCAGGCCTCCAGGTTCTTGATCTAACTTCAAACTCATTCACTGGACATATTCCAGCTGAGCTGGGACTTTGCTCCCAACTTTCTCTACTTGCTCTGTATCAAAATTCTCTTTCGGGTTCAATTCCACCAGAACTAGGAAACCTTAGTAATCTGCAGTTATTAGATTTGGGTGATAACCTTTTGAGTGGAAGCATGCCGGAGAGCATTTGCAACTGCAGAAACTTGTCTTTGTTTGGTGCGGAATTTAATAACCTCACTGGCAAACTCCCATCAAACATAGGAAATCTTGTTAATCTTGAGCTTCTTATAGCAAGTGGCAACAACTTTGTAGGCTCATTACCTGGTTCCATGGGTAAGTTGGCAGCTTTCAAAGAGGTTGATTTAAGTAAAAACCAGTTGTCCGGTGCAATACCTAGGGAGCTAGGGAATCTGTCAAATTTAGAACAACTGGTAGTGTTTGATAATTCCTTTGTTGGGGAAATCCCTTCTGAACTAAGTCGGTGTAAGAAGCTTGTTAACCTTGAACTTTACGAGAATCATTTCACCGGAAGCATTCCCTCTGAGCTTGGAAGTTTGGTTCATTTAGAAACATTGAGATTGTACAAGAATAGGCTAAACTCTACAATTCCACTCTCCATTTTTCAGCTGAAATCATTAACCCATTTAGGACTTTCAGAAAATGAGTTAACTGGGACAATACCATCCGAGCTTGGATCTTTAAGATCATTGCAAGTATTGACCCTGCACTCCAATAAGTTTACTGGAGAGATCCCCTCATCCTTGACAAGCTTGACAAATCTAACATATCTGTCAATGAGCTTAAATTTTCTAACAGGGGAACTTCCATCAAACATAGGGTTGCTTTATAATCTTAAAAACCTCTCCATGAATGGCAACCTTCTTGAGGGATCCATACCATCTAGTATCGCCAACTGTACCAATCTTCAAGTTATAAGCTTGGCTTATAATAGAATAACTGGAAAAATACCTCAGGGTCTGGGGCAGTTGCCGAAGCTTAATTTCCTTTCTGTTGGATCAAATAAATTGTTCGGAGAAATCCCAGATGACCTCTTCAATTGCACTAGTCTTCTCACTCTAGATTTGGGCCTGAACAACTTTAGTGGTTATCTGAAACCCGGATTTGGAAAACTTTCCAATCTCAGGGTTTTGAGAGCCACCTCCAATTCATTTGTCGGACAAATTCCACCAGAGATTGGCCAACTAAACCAACTTATCATCCTCACACTTGCTGAGAATAGATTCTCAGGTCCAGTTCCACCACAGCTGTCTAATCTCTCTCACCTACAAGGGCTATCCCTGCATGACAATGCTTTAGAAGGAGCCATCCCTGAGAAACTTTTTGAGCTAAAAGAGCTAACTGTTCTAGAGTTGCAGCAAAACAAACTGACCGGTCCAATTCCAGATACTGTCTCAAAACTTGAGTTGCTTTCATACTTAAACCTCCAAGGTAATATGCTCAATGGTTCCATTCCGAAAAGCATGGGTCACCTTAATCGGCTAACGACTCTGGATCTCTCTCACAATCATCTCTCAGGACCCATTCCAGGGTCTGTGATCTCAGGGATGAAAAGCATGCAGATATATTTGAATTTCTCATACAATTTCTTGGATGGCAGCATTCCAGACGAGCTTGGCATGTTGGAAATGGTGCAGGCCATTGACATTTCCAACAATAATCTTTCAGGGATGATTCCTGTAGCACTAGAAGGCTGCAGGAATTTGTACTCTCTTGATCTGTCAGGTAACAAACTTTCTGGGCCAATTCAAGCTGAAGTTTTTGCTAAGATGGACACCTTCACAAGCTTGAACCTTTCAAGGAATCACTTAGATGGTGAACTCCCAGAAAAGTTGACAAATCTGAAGCATCTTAGCTCCCTTGATCTTTCCCAGAATTTTCTGAGGGGAGTTATCCGTGAGAGCTTTACCAATTTTACCAGCTTGAAACACTTGAACCTTTCTTTCAATCAACTTGAAGGCCCTGTTCCAGACACCGGACTATTCAGAAATATAAATGCATCCAGCTTGGTAGGAAACCCGGATCTCTGTGGAAACAAACTGCTCAAGACATGCAAGAAAAGTTCACACCGGATATCCAAGATCATGTACGTTCTCGTGGCACTTGGAATAATTTCCGTACTGCTTATTCTAGTGATCATTTTCCTAAACCTCAGCCGGTTCACCAAAATGTGTAAGCCAGAAAAGATTGAAAATCCAGAACCAGAGTGTGCTGCAGCTTTGACACTCAAGAGGTTTGATCAAAAGGATTTAGAAAATGCCACTAGTTTCTTTAGCCAAGAGAACATTTTAGGCGCAAGCAGTTTGAGTACTGTGTACAAGGGTCAACTGGAAGATGAGCAGATAGTAGCCATAAAGAGATTGAATCTCCAGGAATTCTCAGTTGAGTCAGATAAATGCTTCAATAGAGAAATCAAGACACTGAGTCAACTAAGGCACAGGAATTTGGTGAAGGTACTTGGCTATGCATGGGAGAGCGGGAAATTAAAGGCCTTGGTTCTGGAATACATGAAGAATGGAAACCTGGAGAACATTATACATGAAGATGGGATGAATCAGTGGAGATTGACATTCTCTCAGAGAATCAATATTTTAATCTCTATAGCAAGTGGACTGGATTACCTGCATTCAGGCTATGATTTTCCCATCGTTCATTGCGACTTGAAGCCTTCTAACATCTTGTTGGATGAGGATTGGGAGGCCCATGTGAGTGATTTTGGAACAGCTAGAATGTTGGGTGTTCATCTCCAGGATGGGAGTAGCCTTTCCACGGCATCAGCTTTCCAAGGCACAATTGGCTACTTAGCGCCAGAGTTTGCATACATGAGGAAAATCACAACCAAGGTAGACGTCTTCAGCTTTGGTGTAATAGTGATGGAGTTGCTGACAAGACAAAGGCCAACAGGACTCATGGAAGAGAATGGGCTGCCAATGAGCTTGCACCAAGTAGTGGAGAAAGCCCTCGCAAATGGATCAGATTCGATTCTTGAAGTTCTGGACCCGATGCTAACTTCAAATATCTCCGAGGAACAGGTGGCAAGTGCAGAAGAGCTGCTCAAGCTAGCCTTGTTTTGCACCAACCAAAATCCCGAGCAGCGACCTATCATGAATGAGGTGTTGTCTGCTCTTTTGAAGCTGAAAAAGGCAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0006898 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009595 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010359 GO:0012505 GO:0016020 GO:0016043 GO:0016045 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022898 GO:0023052 GO:0031410 GO:0031982 GO:0032409 GO:0032412 GO:0032879 GO:0033036 GO:0033037 GO:0033554 GO:0034762 GO:0034765 GO:0036211 GO:0038023 GO:0042545 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043269 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051606 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0060089 GO:0065007 GO:0065009 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098542 GO:0098543 GO:0098581 GO:0098657 GO:0140096 GO:1901564 GO:1903959

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

1157

Amino Acids

126.42

Weight (kDa)

5.59

Isoelectric Point (pI)

29.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	30 - 68	1.9e-11	Leucine rich repeat N-terminal domain
LRR_14	PF23598	182 - 272	3.9e-06	Leucine-rich repeat region
LRR_14	PF23598	271 - 369	1e-10	Leucine-rich repeat region
LRR_8	PF13855	289 - 348	6.4e-07	Leucine rich repeat
LRR_14	PF23598	317 - 391	4e-07	Leucine-rich repeat region
LRR_14	PF23598	379 - 488	1.3e-07	Leucine-rich repeat region
LRR_8	PF13855	385 - 444	3.6e-07	Leucine rich repeat
LRR_14	PF23598	472 - 561	3.3e-07	Leucine-rich repeat region
LRR_8	PF13855	553 - 612	1.5e-08	Leucine rich repeat
LRR_8	PF13855	653 - 711	1e-07	Leucine rich repeat
LRR_8	PF13855	702 - 759	9.2e-08	Leucine rich repeat
Pkinase	PF00069	866 - 1148	8.6e-45	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	868 - 1150	3.9e-38	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0008065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46330 AT5G46330
fragaria_vesca	FvH4_3g06100
malus_domestica	MD05G1289000.v1.1
prunus_persica	Prupe.4G076500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0013311
rosa_laevigata	RLG00000032007 RLG00000032011
rosa_multiflora	Rmu_co8051088.1_g000001 Rmu_sc0003458.1_g000007 Rmu_sc0003458.1_g000011 Rmu_sc0004521.1_g000021 Rmu_sc0007948.1_g000008
rosa_roxburghii	Rroxscaffold_1G00063230
rosa_rugosa	Rorug05G0008800
rosa_samantha	Rh5AG103400 Rh5AG103500 Rh5AG104200 Rh5BG100200 Rh5CG111400 Rh5CG111800 Rh5DG099000
rosa_wichuraiana	Rw5G009030 Rw5G009070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1152, 1238, 1251
AatII	GACGTC	2 cut(s)	161, 3174
Acc36I	ACCTGC	1 cut(s)	2952
AccB7I	CCANNNNNTGG	2 cut(s)	1499, 3271
AccBSI	CCGCTC	1 cut(s)	2799
AccI	GTMKAC	1 cut(s)	3168
AciI	CCGC	3 cut(s)	239, 524, 2799
AclWI	GGATC	8 cut(s)	1006, 1048, 1188, 1201, 1327, 1824, 2352, 3301
AcoI	YGGCCR	1 cut(s)	1501
AcuI	CTGAAG	3 cut(s)	2097, 2186, 3160
AcyI	GRCGYC	2 cut(s)	158, 3171
AfaI	GTAC	8 cut(s)	887, 1222, 2030, 2411, 2442, 2632, 2639, 2778
AgeI	ACCGGT	1 cut(s)	1694
AhdI	GACNNNNNGTC	1 cut(s)	2745
AhlI	ACTAGT	2 cut(s)	1367, 2585
AjnI	CCWGG	6 cut(s)	294, 625, 1849, 2691, 2844, 3069
AleI	CACNNNNGTG	1 cut(s)	257
AloI	GAACNNNNNNTCC	2 cut(s)	846, 878
Alw26I	GTCTC	3 cut(s)	12, 268, 1720
AlwI	GGATC	8 cut(s)	1006, 1048, 1188, 1201, 1327, 1824, 2352, 3301
AlwNI	CAGNNNCTG	3 cut(s)	1282, 1712, 1856
Ama87I	CYCGRG	1 cut(s)	3410
AsiGI	ACCGGT	1 cut(s)	1694
Asp700I	GAANNNNTTC	6 cut(s)	107, 283, 824, 1435, 1544, 2434
AspA2I	CCTAGG	1 cut(s)	698
AspLEI	GCGC	2 cut(s)	2618, 3130
AspS9I	GGNCC	8 cut(s)	1390, 1553, 1697, 1841, 2063, 2282, 3022, 3319
AsuC2I	CCSGG	2 cut(s)	1422, 2342
AsuHPI	GGTGA	9 cut(s)	115, 258, 467, 820, 1577, 1784, 2150, 2476, 2782
AsuNHI	GCTAGC	1 cut(s)	3382
AvaI	CYCGRG	1 cut(s)	3410
AvaII	GGWCC	4 cut(s)	1553, 1697, 1841, 3319
AvrII	CCTAGG	1 cut(s)	698
AxyI	CCTNAGG	1 cut(s)	1275
BalI	TGGCCA	1 cut(s)	1503
BamHI	GGATCC	1 cut(s)	1193
BauI	CACGAG	1 cut(s)	2417
BbsI	GAAGAC	2 cut(s)	1364, 3166
BbvCI	CCTCAGC	1 cut(s)	2474
BceAI	ACGGC	1 cut(s)	3108
BciT130I	CCWGG	6 cut(s)	296, 627, 1851, 2693, 2846, 3071
BclI	TGATCA	2 cut(s)	2457, 2560
BcnI	CCSGG	2 cut(s)	1422, 2342
BcoDI	GTCTC	3 cut(s)	12, 268, 1720
BcuI	ACTAGT	2 cut(s)	1367, 2585
BfmI	CTRYAG	6 cut(s)	437, 499, 2001, 2017, 2535, 2922
BfoI	RGCGCY	1 cut(s)	3131
BfuAI	ACCTGC	1 cut(s)	2952
BglI	GCCNNNNNGGC	1 cut(s)	104
BlnI	CCTAGG	1 cut(s)	698
BlpI	GCTNAGC	2 cut(s)	69, 342
BmcAI	AGTACT	1 cut(s)	2632
Bme1390I	CCNGG	8 cut(s)	296, 627, 1422, 1851, 2342, 2693, 2846, 3071
Bme18I	GGWCC	4 cut(s)	1553, 1697, 1841, 3319
BmeRI	GACNNNNNGTC	1 cut(s)	2745
BmeT110I	CYCGRG	1 cut(s)	3410
BmgT120I	GGNCC	8 cut(s)	1390, 1553, 1697, 1841, 2063, 2282, 3022, 3319
BmiI	GGNNCC	6 cut(s)	631, 1195, 1627, 1771, 1843, 3321
BmrFI	CCNGG	8 cut(s)	296, 627, 1422, 1851, 2342, 2693, 2846, 3071
BmrI	ACTGGG	1 cut(s)	984
BmsI	GCATC	4 cut(s)	2179, 2330, 3104, 3315
BmtI	GCTAGC	1 cut(s)	3386
BmuI	ACTGGG	1 cut(s)	984
BpiI	GAAGAC	2 cut(s)	1364, 3166
BplI	GAGNNNNNCTC	2 cut(s)	1043, 1075
BpmI	CTGGAG	5 cut(s)	278, 1068, 2675, 2867, 3053
Bpu10I	CCTNAGC	1 cut(s)	2474
Bpu1102I	GCTNAGC	2 cut(s)	69, 342
BpuEI	CTTGAG	6 cut(s)	602, 1208, 1745, 2351, 2534, 3362
BpuMI	CCSGG	2 cut(s)	1422, 2342
BsaHI	GRCGYC	2 cut(s)	158, 3171
BsaI	GGTCTC	1 cut(s)	268
BsaWI	WCCGGW	5 cut(s)	686, 830, 1694, 2297, 2391
Bse118I	RCCGGY	2 cut(s)	1694, 2478
Bse21I	CCTNAGG	1 cut(s)	1275
Bse3DI	GCAATG	3 cut(s)	192, 1010, 2974
BseBI	CCWGG	6 cut(s)	296, 627, 1851, 2693, 2846, 3071
BseMI	GCAATG	3 cut(s)	192, 1010, 2974
BseYI	CCCAGC	1 cut(s)	346
BsgI	GTGCAG	3 cut(s)	1013, 1976, 3384
BshTI	ACCGGT	1 cut(s)	1694
BsiHKCI	CYCGRG	1 cut(s)	3410
BsiSI	CCGG	9 cut(s)	482, 687, 831, 1422, 1695, 2298, 2342, 2392, 2479
BslFI	GGGAC	2 cut(s)	363, 991
BsmAI	GTCTC	3 cut(s)	12, 268, 1720
BsmFI	GGGAC	2 cut(s)	363, 991
BsmI	GAATGC	3 cut(s)	837, 1923, 2947
Bso31I	GGTCTC	1 cut(s)	268
BsoBI	CYCGRG	1 cut(s)	3410
Bsp1407I	TGTACA	2 cut(s)	885, 2637
Bsp1720I	GCTNAGC	2 cut(s)	69, 342
Bsp19I	CCATGG	1 cut(s)	633
BspACI	CCGC	3 cut(s)	239, 524, 2799
BspHI	TCATGA	1 cut(s)	3426
BspLI	GGNNCC	6 cut(s)	631, 1195, 1627, 1771, 1843, 3321
BspMAI	CTGCAG	4 cut(s)	441, 503, 2021, 2539
BspMI	ACCTGC	1 cut(s)	2952
BspOI	GCTAGC	1 cut(s)	3386
BspPI	GGATC	8 cut(s)	1006, 1048, 1188, 1201, 1327, 1824, 2352, 3301
BspQI	GCTCTTC	1 cut(s)	3363
BspTNI	GGTCTC	1 cut(s)	268
BsrBI	CCGCTC	1 cut(s)	2799
BsrDI	GCAATG	3 cut(s)	192, 1010, 2974
BsrFI	RCCGGY	2 cut(s)	1694, 2478
BsrGI	TGTACA	2 cut(s)	885, 2637
BssAI	RCCGGY	2 cut(s)	1694, 2478
BssNI	GRCGYC	2 cut(s)	158, 3171
BssSI	CACGAG	1 cut(s)	2417
BssT1I	CCWWGG	6 cut(s)	633, 698, 1750, 2814, 3106, 3162
Bst2BI	CACGAG	1 cut(s)	2417
Bst2UI	CCWGG	6 cut(s)	296, 627, 1851, 2693, 2846, 3071
Bst4CI	ACNGT	4 cut(s)	1220, 1666, 1714, 2635
Bst6I	CTCTTC	3 cut(s)	1361, 3231, 3363
BstACI	GRCGYC	2 cut(s)	158, 3171
BstAUI	TGTACA	2 cut(s)	885, 2637
BstC8I	GCNNGC	7 cut(s)	169, 479, 1880, 1959, 2620, 3260, 3384
BstDSI	CCRYGG	2 cut(s)	633, 3090
BstEII	GGTNACC	1 cut(s)	1790
BstENI	CCTNNNNNAGG	1 cut(s)	1187
BstH2I	RGCGCY	1 cut(s)	3131
BstHHI	GCGC	2 cut(s)	2618, 3130
BstMAI	GTCTC	3 cut(s)	12, 268, 1720
BstMWI	GCNNNNNNNGC	6 cut(s)	104, 177, 1603, 1657, 3117, 3379
BstNI	CCWGG	6 cut(s)	296, 627, 1851, 2693, 2846, 3071
BstNSI	RCATGY	4 cut(s)	481, 1882, 1945, 2376
BstPI	GGTNACC	1 cut(s)	1790
BstSCI	CCNGG	8 cut(s)	294, 625, 1420, 1849, 2340, 2691, 2844, 3069
BstSFI	CTRYAG	6 cut(s)	437, 499, 2001, 2017, 2535, 2922
BstV2I	GAAGAC	2 cut(s)	1364, 3166
BstX2I	RGATCY	5 cut(s)	998, 1053, 1193, 1816, 2344
BstYI	RGATCY	5 cut(s)	998, 1053, 1193, 1816, 2344
Bsu36I	CCTNAGG	1 cut(s)	1275
BtgI	CCRYGG	2 cut(s)	633, 3090
BtsI	GCAGTG	1 cut(s)	175
BtsIMutI	CAGTG	5 cut(s)	175, 324, 540, 2741, 2885
BveI	ACCTGC	1 cut(s)	2952
Cac8I	GCNNGC	7 cut(s)	169, 479, 1880, 1959, 2620, 3260, 3384
CaiI	CAGNNNCTG	3 cut(s)	1282, 1712, 1856
CciI	TCATGA	1 cut(s)	3426
CfoI	GCGC	2 cut(s)	2618, 3130
Cfr10I	RCCGGY	2 cut(s)	1694, 2478
Cfr13I	GGNCC	8 cut(s)	1390, 1553, 1697, 1841, 2063, 2282, 3022, 3319
CseI	GACGC	1 cut(s)	173
CsiI	ACCWGGT	1 cut(s)	625
Csp6I	GTAC	8 cut(s)	886, 1221, 2029, 2410, 2441, 2631, 2638, 2777
CspAI	ACCGGT	1 cut(s)	1694
CspCI	CAANNNNNGTGG	2 cut(s)	1387, 1422
CviQI	GTAC	8 cut(s)	886, 1221, 2029, 2410, 2441, 2631, 2638, 2777
DriI	GACNNNNNGTC	1 cut(s)	2745
EaeI	YGGCCR	1 cut(s)	1501
Eam1104I	CTCTTC	3 cut(s)	1361, 3231, 3363
Eam1105I	GACNNNNNGTC	1 cut(s)	2745
EarI	CTCTTC	3 cut(s)	1361, 3231, 3363
EciI	GGCGGA	1 cut(s)	254
Eco130I	CCWWGG	6 cut(s)	633, 698, 1750, 2814, 3106, 3162
Eco147I	AGGCCT	3 cut(s)	98, 291, 2813
Eco31I	GGTCTC	1 cut(s)	268
Eco32I	GATATC	1 cut(s)	2397
Eco47I	GGWCC	4 cut(s)	1553, 1697, 1841, 3319
Eco57I	CTGAAG	3 cut(s)	2097, 2186, 3160
Eco81I	CCTNAGG	1 cut(s)	1275
Eco88I	CYCGRG	1 cut(s)	3410
Eco91I	GGTNACC	1 cut(s)	1790
EcoNI	CCTNNNNNAGG	1 cut(s)	1187
EcoO109I	RGGNCCY	2 cut(s)	1841, 2282
EcoO65I	GGTNACC	1 cut(s)	1790
EcoRI	GAATTC	1 cut(s)	2696
EcoRII	CCWGG	6 cut(s)	294, 625, 1849, 2691, 2844, 3069
EcoRV	GATATC	1 cut(s)	2397
EcoT14I	CCWWGG	6 cut(s)	633, 698, 1750, 2814, 3106, 3162
EcoT22I	ATGCAT	2 cut(s)	2323, 2791
ErhI	CCWWGG	6 cut(s)	633, 698, 1750, 2814, 3106, 3162
FalI	AAGNNNNNCTT	4 cut(s)	1231, 1263, 3371, 3403
FaqI	GGGAC	2 cut(s)	363, 991
FauI	CCCGC	1 cut(s)	2792
FbaI	TGATCA	2 cut(s)	2457, 2560
FblI	GTMKAC	1 cut(s)	3168
GlaI	GCGC	2 cut(s)	2617, 3129
GsaI	CCCAGC	1 cut(s)	350
GsuI	CTGGAG	5 cut(s)	278, 1068, 2675, 2867, 3053
HaeII	RGCGCY	1 cut(s)	3131
HapII	CCGG	9 cut(s)	482, 687, 831, 1422, 1695, 2298, 2342, 2392, 2479
HgaI	GACGC	1 cut(s)	173
HhaI	GCGC	2 cut(s)	2618, 3130
Hin1I	GRCGYC	2 cut(s)	158, 3171
Hin6I	GCGC	2 cut(s)	2616, 3128
HinP1I	GCGC	2 cut(s)	2616, 3128
HincII	GTYRAC	5 cut(s)	802, 972, 2157, 2648, 2750
HindII	GTYRAC	5 cut(s)	802, 972, 2157, 2648, 2750
HindIII	AAGCTT	6 cut(s)	76, 794, 1072, 1240, 1298, 2107
HpaI	GTTAAC	2 cut(s)	802, 972
HpaII	CCGG	9 cut(s)	482, 687, 831, 1422, 1695, 2298, 2342, 2392, 2479
HphI	GGTGA	9 cut(s)	115, 258, 467, 820, 1577, 1784, 2150, 2476, 2782
HpyCH4III	ACNGT	4 cut(s)	1220, 1666, 1714, 2635
HpyCH4IV	ACGT	3 cut(s)	158, 2412, 3171
HpyF10VI	GCNNNNNNNGC	6 cut(s)	104, 177, 1603, 1657, 3117, 3379
HpySE526I	ACGT	3 cut(s)	158, 2412, 3171
Hsp92I	GRCGYC	2 cut(s)	158, 3171
HspAI	GCGC	2 cut(s)	2616, 3128
Ksp22I	TGATCA	2 cut(s)	2457, 2560
KspAI	GTTAAC	2 cut(s)	802, 972
LguI	GCTCTTC	1 cut(s)	3363
LmnI	GCTCC	4 cut(s)	362, 703, 1625, 2183
LweI	GCATC	4 cut(s)	2179, 2330, 3104, 3315
MabI	ACCWGGT	1 cut(s)	625
MaeII	ACGT	3 cut(s)	158, 2412, 3171
MaeIII	GTNAC	3 cut(s)	200, 1790, 2048
MbiI	CCGCTC	1 cut(s)	2799
MboII	GAAGA	9 cut(s)	1220, 1348, 1364, 2666, 2845, 2876, 3166, 3248, 3380
MfeI	CAATTG	3 cut(s)	181, 1360, 3114
MflI	RGATCY	5 cut(s)	998, 1053, 1193, 1816, 2344
MlsI	TGGCCA	1 cut(s)	1503
MluNI	TGGCCA	1 cut(s)	1503
MlyI	GAGTC	6 cut(s)	14, 24, 1804, 2717, 2755, 3222
MmeI	TCCRAC	5 cut(s)	1297, 1459, 1926, 1998, 2985
Mox20I	TGGCCA	1 cut(s)	1503
Mph1103I	ATGCAT	2 cut(s)	2323, 2791
MroXI	GAANNNNTTC	6 cut(s)	107, 283, 824, 1435, 1544, 2434
MscI	TGGCCA	1 cut(s)	1503
MslI	CAYNNNNRTG	6 cut(s)	257, 1611, 2133, 2489, 2865, 3030
Msp20I	TGGCCA	1 cut(s)	1503
MspA1I	CMGCKG	3 cut(s)	341, 931, 1570
MspI	CCGG	9 cut(s)	482, 687, 831, 1422, 1695, 2298, 2342, 2392, 2479
MspR9I	CCNGG	8 cut(s)	296, 627, 1422, 1851, 2342, 2693, 2846, 3071
MunI	CAATTG	3 cut(s)	181, 1360, 3114
Mva1269I	GAATGC	3 cut(s)	837, 1923, 2947
MvaI	CCWGG	6 cut(s)	296, 627, 1851, 2693, 2846, 3071
MwoI	GCNNNNNNNGC	6 cut(s)	104, 177, 1603, 1657, 3117, 3379
NciI	CCSGG	2 cut(s)	1422, 2342
NcoI	CCATGG	1 cut(s)	633
NheI	GCTAGC	1 cut(s)	3382
NlaIV	GGNNCC	6 cut(s)	631, 1195, 1627, 1771, 1843, 3321
NmuCI	GTSAC	2 cut(s)	200, 1790
NsiI	ATGCAT	2 cut(s)	2323, 2791
NspI	RCATGY	4 cut(s)	481, 1882, 1945, 2376
OliI	CACNNNNGTG	1 cut(s)	257
PaeI	GCATGC	2 cut(s)	481, 1882
PagI	TCATGA	1 cut(s)	3426
PceI	AGGCCT	3 cut(s)	98, 291, 2813
PciSI	GCTCTTC	1 cut(s)	3363
PcsI	WCGNNNNNNNCGW	1 cut(s)	2976
PctI	GAATGC	3 cut(s)	837, 1923, 2947
PdmI	GAANNNNTTC	6 cut(s)	107, 283, 824, 1435, 1544, 2434
PflMI	CCANNNNNTGG	2 cut(s)	1499, 3271
PfoI	TCCNGGA	2 cut(s)	2691, 3069
PinAI	ACCGGT	1 cut(s)	1694
PleI	GAGTC	6 cut(s)	13, 23, 1804, 2716, 2754, 3222
PpsI	GAGTC	6 cut(s)	13, 23, 1804, 2716, 2754, 3222
PpuMI	RGGWCCY	1 cut(s)	1841
PsiI	TTATAA	3 cut(s)	1152, 1238, 1251
Psp5II	RGGWCCY	1 cut(s)	1841
Psp6I	CCWGG	6 cut(s)	294, 625, 1849, 2691, 2844, 3069
PspEI	GGTNACC	1 cut(s)	1790
PspFI	CCCAGC	1 cut(s)	346
PspGI	CCWGG	6 cut(s)	294, 625, 1849, 2691, 2844, 3069
PspN4I	GGNNCC	6 cut(s)	631, 1195, 1627, 1771, 1843, 3321
PspPI	GGNCC	8 cut(s)	1390, 1553, 1697, 1841, 2063, 2282, 3022, 3319
PspPPI	RGGWCCY	1 cut(s)	1841
PstI	CTGCAG	4 cut(s)	441, 503, 2021, 2539
PstNI	CAGNNNCTG	3 cut(s)	1282, 1712, 1856
PsuI	RGATCY	5 cut(s)	998, 1053, 1193, 1816, 2344
PvuII	CAGCTG	3 cut(s)	341, 931, 1570
RsaI	GTAC	8 cut(s)	887, 1222, 2030, 2411, 2442, 2632, 2639, 2778
RsaNI	GTAC	8 cut(s)	886, 1221, 2029, 2410, 2441, 2631, 2638, 2777
RseI	CAYNNNNRTG	6 cut(s)	257, 1611, 2133, 2489, 2865, 3030
SapI	GCTCTTC	1 cut(s)	3363
Sau96I	GGNCC	8 cut(s)	1390, 1553, 1697, 1841, 2063, 2282, 3022, 3319
ScaI	AGTACT	1 cut(s)	2632
SchI	GAGTC	6 cut(s)	14, 24, 1804, 2717, 2755, 3222
ScrFI	CCNGG	8 cut(s)	296, 627, 1422, 1851, 2342, 2693, 2846, 3071
SexAI	ACCWGGT	1 cut(s)	625
SfaNI	GCATC	4 cut(s)	2179, 2330, 3104, 3315
SfcI	CTRYAG	6 cut(s)	437, 499, 2001, 2017, 2535, 2922
SinI	GGWCC	4 cut(s)	1553, 1697, 1841, 3319
SmiMI	CAYNNNNRTG	6 cut(s)	257, 1611, 2133, 2489, 2865, 3030
SmlI	CTYRAG	6 cut(s)	581, 1187, 1724, 2366, 2549, 3377
SmoI	CTYRAG	6 cut(s)	581, 1187, 1724, 2366, 2549, 3377
SpeI	ACTAGT	2 cut(s)	1367, 2585
SphI	GCATGC	2 cut(s)	481, 1882
SseBI	AGGCCT	3 cut(s)	98, 291, 2813
SsiI	CCGC	3 cut(s)	239, 524, 2799
SspI	AATATT	1 cut(s)	2911
StuI	AGGCCT	3 cut(s)	98, 291, 2813
StyD4I	CCNGG	8 cut(s)	294, 625, 1420, 1849, 2340, 2691, 2844, 3069
StyI	CCWWGG	6 cut(s)	633, 698, 1750, 2814, 3106, 3162
TaaI	ACNGT	4 cut(s)	1220, 1666, 1714, 2635
TaiI	ACGT	3 cut(s)	161, 2415, 3174
TaqI	TCGA	2 cut(s)	93, 3302
TatI	WGTACW	4 cut(s)	885, 2028, 2630, 2637
TscAI	CASTG	5 cut(s)	182, 331, 547, 2748, 2885
TseFI	GTSAC	2 cut(s)	200, 1790
Tsp45I	GTSAC	2 cut(s)	200, 1790
TspGWI	ACGGA	2 cut(s)	2207, 2428
TspRI	CASTG	5 cut(s)	182, 331, 547, 2748, 2885
Van91I	CCANNNNNTGG	2 cut(s)	1499, 3271
VpaK11BI	GGWCC	4 cut(s)	1553, 1697, 1841, 3319
XagI	CCTNNNNNAGG	1 cut(s)	1187
XbaI	TCTAGA	2 cut(s)	1381, 1669
XceI	RCATGY	4 cut(s)	481, 1882, 1945, 2376
XcmI	CCANNNNNNNNNTGG	2 cut(s)	640, 3113
XmaJI	CCTAGG	1 cut(s)	698
XmiI	GTMKAC	1 cut(s)	3168
XmnI	GAANNNNTTC	6 cut(s)	107, 283, 824, 1435, 1544, 2434
ZraI	GACGTC	2 cut(s)	159, 3172
ZrmI	AGTACT	1 cut(s)	2632
Zsp2I	ATGCAT	2 cut(s)	2323, 2791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.