Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0008065

Physical Location & Seq

Genomic Coordinates Reverse (-)

9092534 .. 9093669

Gene Structure 1136 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG099000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGTGTAAGCCAGAAAAGATTGAAAATCCAGAACCAGAGTGTGCTGCAGCTTTGGCACTCAAGAGGTTTGATCAAAAGGATTTAGAAAATGCCACTAGTTTCTTTAGCAAAGAGAACATTTTAGGCACAAGCAGGTTGAGTACTGTGTACAAGGGTCAACTGGAAGATGAGCAGATAGTAGCCATAAAGAGATTGAATCTCCAGGAATTCTCAGTTGAGTCAGATAAATGCTTCAATAGAGAAATCAAGACACTGAGTCAACTAAGGCACAGGAATTTGGTGAAGGATGGGAGTAGCCTTTCCACGGCATCAGCTTTCCAAGGCACAATTGGCTACTTAGCACCAGAGTTTGCATACATGAGGAAAATCACAACCAAGGTAGACGTCTTCAGCTTTGGTGTAATAGTGATGGAGTTACTGACAAGACAAAGGCCAACAGGACTCATGGAAGGAAATGGGCTGCCAATGAGCTTGCACCAAGTAGTGGAGAAAGCCCTTGCAGATGGATCAGATTCGCTTCTTGAAGTTCTGGACCCGATGCTAACTTTAAATATCTCCGAGGAACAGGTGGCAAATGCAGAAGAGCTGCTCAAGCTAGCCTTGTTTTGCACCAACCAAAATCCCGAGCAGCGACCTATCATGAATGAGGTGTTGTCTGCTCTTTTGAAGCTGAAAAAGGCAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0006898 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009595 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010359 GO:0012505 GO:0016020 GO:0016043 GO:0016045 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022898 GO:0023052 GO:0031410 GO:0031982 GO:0032409 GO:0032412 GO:0032879 GO:0033036 GO:0033037 GO:0033554 GO:0034762 GO:0034765 GO:0036211 GO:0038023 GO:0042545 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043269 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051606 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0060089 GO:0065007 GO:0065009 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098542 GO:0098543 GO:0098581 GO:0098657 GO:0140096 GO:1901564 GO:1903959

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

228

Amino Acids

25.48

Weight (kDa)

5.43

Isoelectric Point (pI)

39.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	36 - 95	1.6e-06	Protein kinase domain
Pkinase	PF00069	102 - 219	3.8e-11	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	105 - 221	5.9e-08	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46330 AT5G46330
fragaria_vesca	FvH4_3g06100
malus_domestica	MD05G1289000.v1.1
prunus_persica	Prupe.4G076500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0013311
rosa_laevigata	RLG00000032007 RLG00000032011
rosa_multiflora	Rmu_co8051088.1_g000001 Rmu_sc0003458.1_g000007 Rmu_sc0003458.1_g000011 Rmu_sc0004521.1_g000021 Rmu_sc0007948.1_g000008
rosa_roxburghii	Rroxscaffold_1G00063230
rosa_rugosa	Rorug05G0008800
rosa_samantha	Rh5AG103400 Rh5AG103500 Rh5AG104200 Rh5BG100200 Rh5CG111400 Rh5CG111800 Rh5DG099000
rosa_wichuraiana	Rw5G009030 Rw5G009070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	387
Acc36I	ACCTGC	1 cut(s)	123
AccB7I	CCANNNNNTGG	1 cut(s)	484
AccI	GTMKAC	1 cut(s)	381
AclWI	GGATC	1 cut(s)	514
AcsI	RAATTY	2 cut(s)	206, 274
AcuI	CTGAAG	1 cut(s)	373
AcyI	GRCGYC	1 cut(s)	384
AfaI	GTAC	2 cut(s)	142, 149
AfiI	CCNNNNNNNGG	2 cut(s)	304, 484
AgsI	TTSAA	5 cut(s)	23, 196, 235, 524, 667
AhdI	GACNNNNNGTC	1 cut(s)	255
AhlI	ACTAGT	1 cut(s)	95
AjnI	CCWGG	1 cut(s)	201
AluBI	AGCT	7 cut(s)	50, 314, 393, 471, 586, 595, 670
AluI	AGCT	7 cut(s)	50, 314, 393, 471, 586, 595, 670
AlwI	GGATC	1 cut(s)	514
Ama87I	CYCGRG	1 cut(s)	623
AoxI	GGCC	1 cut(s)	431
ApeKI	GCWGC	5 cut(s)	44, 47, 460, 586, 628
ApoI	RAATTY	2 cut(s)	206, 274
AspS9I	GGNCC	1 cut(s)	532
AsuHPI	GGTGA	1 cut(s)	292
AsuNHI	GCTAGC	1 cut(s)	595
AvaI	CYCGRG	1 cut(s)	623
AvaII	GGWCC	1 cut(s)	532
BbsI	GAAGAC	1 cut(s)	379
BbvI	GCAGC	5 cut(s)	31, 59, 447, 573, 640
BccI	CCATC	3 cut(s)	281, 403, 497
BceAI	ACGGC	1 cut(s)	321
BciT130I	CCWGG	1 cut(s)	203
BclI	TGATCA	1 cut(s)	70
BcuI	ACTAGT	1 cut(s)	95
BfaI	CTAG	2 cut(s)	96, 596
BfmI	CTRYAG	1 cut(s)	45
BfuAI	ACCTGC	1 cut(s)	123
BisI	GCNGC	5 cut(s)	45, 48, 461, 587, 629
BlsI	GCNGC	5 cut(s)	46, 49, 462, 588, 630
BmcAI	AGTACT	1 cut(s)	142
Bme1390I	CCNGG	1 cut(s)	203
Bme18I	GGWCC	1 cut(s)	532
BmeRI	GACNNNNNGTC	1 cut(s)	255
BmeT110I	CYCGRG	1 cut(s)	623
BmgT120I	GGNCC	1 cut(s)	532
BmiI	GGNNCC	1 cut(s)	534
BmrFI	CCNGG	1 cut(s)	203
BmsI	GCATC	2 cut(s)	317, 528
BmtI	GCTAGC	1 cut(s)	599
BpiI	GAAGAC	1 cut(s)	379
BpmI	CTGGAG	1 cut(s)	185
BpuEI	CTTGAG	2 cut(s)	44, 575
BsaHI	GRCGYC	1 cut(s)	384
BsaJI	CCNNGG	4 cut(s)	303, 319, 375, 558
Bsc4I	CCNNNNNNNGG	2 cut(s)	304, 484
Bse1I	ACTGG	1 cut(s)	165
BseBI	CCWGG	1 cut(s)	203
BseDI	CCNNGG	4 cut(s)	303, 319, 375, 558
BseGI	GGATG	1 cut(s)	292
BseLI	CCNNNNNNNGG	2 cut(s)	304, 484
BseMII	CTCAG	2 cut(s)	225, 245
BseNI	ACTGG	1 cut(s)	165
BseXI	GCAGC	5 cut(s)	31, 59, 447, 573, 640
BshFI	GGCC	1 cut(s)	433
BsiHKCI	CYCGRG	1 cut(s)	623
BslI	CCNNNNNNNGG	2 cut(s)	304, 484
BsnI	GGCC	1 cut(s)	433
BsoBI	CYCGRG	1 cut(s)	623
Bsp1407I	TGTACA	1 cut(s)	147
Bsp143I	GATC	2 cut(s)	70, 506
BspANI	GGCC	1 cut(s)	433
BspCNI	CTCAG	2 cut(s)	224, 246
BspHI	TCATGA	1 cut(s)	639
BspLI	GGNNCC	1 cut(s)	534
BspMAI	CTGCAG	1 cut(s)	49
BspMI	ACCTGC	1 cut(s)	123
BspOI	GCTAGC	1 cut(s)	599
BspPI	GGATC	1 cut(s)	514
BspQI	GCTCTTC	1 cut(s)	576
BsrGI	TGTACA	1 cut(s)	147
BsrI	ACTGG	1 cut(s)	165
BssECI	CCNNGG	4 cut(s)	303, 319, 375, 558
BssMI	GATC	2 cut(s)	70, 506
BssNI	GRCGYC	1 cut(s)	384
BssT1I	CCWWGG	2 cut(s)	319, 375
Bst2UI	CCWGG	1 cut(s)	203
Bst4CI	ACNGT	1 cut(s)	145
Bst6I	CTCTTC	1 cut(s)	576
BstACI	GRCGYC	1 cut(s)	384
BstAUI	TGTACA	1 cut(s)	147
BstC8I	GCNNGC	2 cut(s)	473, 597
BstDEI	CTNAG	4 cut(s)	211, 254, 263, 337
BstDSI	CCRYGG	1 cut(s)	303
BstF5I	GGATG	1 cut(s)	292
BstKTI	GATC	2 cut(s)	73, 509
BstMBI	GATC	2 cut(s)	70, 506
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 330, 592
BstNI	CCWGG	1 cut(s)	203
BstSCI	CCNGG	1 cut(s)	201
BstSFI	CTRYAG	1 cut(s)	45
BstV1I	GCAGC	5 cut(s)	31, 59, 447, 573, 640
BstV2I	GAAGAC	1 cut(s)	379
BsuRI	GGCC	1 cut(s)	433
BtgI	CCRYGG	1 cut(s)	303
BtsCI	GGATG	1 cut(s)	292
BtsIMutI	CAGTG	1 cut(s)	251
BveI	ACCTGC	1 cut(s)	123
Cac8I	GCNNGC	2 cut(s)	473, 597
CciI	TCATGA	1 cut(s)	639
Cfr13I	GGNCC	1 cut(s)	532
Csp6I	GTAC	2 cut(s)	141, 148
CviAII	CATG	3 cut(s)	358, 445, 640
CviQI	GTAC	2 cut(s)	141, 148
DdeI	CTNAG	4 cut(s)	211, 254, 263, 337
DpnI	GATC	2 cut(s)	72, 508
DpnII	GATC	2 cut(s)	70, 506
DraI	TTTAAA	1 cut(s)	549
DriI	GACNNNNNGTC	1 cut(s)	255
Eam1104I	CTCTTC	1 cut(s)	576
Eam1105I	GACNNNNNGTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	576
Eco130I	CCWWGG	2 cut(s)	319, 375
Eco47I	GGWCC	1 cut(s)	532
Eco57I	CTGAAG	1 cut(s)	373
Eco88I	CYCGRG	1 cut(s)	623
EcoRI	GAATTC	1 cut(s)	206
EcoRII	CCWGG	1 cut(s)	201
EcoT14I	CCWWGG	2 cut(s)	319, 375
ErhI	CCWWGG	2 cut(s)	319, 375
FaeI	CATG	3 cut(s)	361, 448, 643
FaiI	YATR	6 cut(s)	185, 355, 359, 446, 641, 685
FalI	AAGNNNNNCTT	2 cut(s)	584, 616
FatI	CATG	3 cut(s)	357, 444, 639
FbaI	TGATCA	1 cut(s)	70
FblI	GTMKAC	1 cut(s)	381
Fnu4HI	GCNGC	5 cut(s)	45, 48, 461, 587, 629
FokI	GGATG	1 cut(s)	299
Fsp4HI	GCNGC	5 cut(s)	45, 48, 461, 587, 629
FspBI	CTAG	2 cut(s)	96, 596
GluI	GCNGC	5 cut(s)	45, 48, 461, 587, 629
GsuI	CTGGAG	1 cut(s)	185
HaeIII	GGCC	1 cut(s)	433
Hin1I	GRCGYC	1 cut(s)	384
Hin1II	CATG	3 cut(s)	361, 448, 643
HincII	GTYRAC	2 cut(s)	158, 260
HindII	GTYRAC	2 cut(s)	158, 260
HinfI	GANTC	5 cut(s)	196, 218, 256, 441, 512
HphI	GGTGA	1 cut(s)	292
Hpy166II	GTNNAC	4 cut(s)	148, 158, 260, 382
Hpy188I	TCNGA	3 cut(s)	223, 511, 559
Hpy188III	TCNNGA	7 cut(s)	29, 61, 247, 521, 530, 623, 640
Hpy8I	GTNNAC	4 cut(s)	148, 158, 260, 382
HpyAV	CCTTC	2 cut(s)	277, 443
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4IV	ACGT	1 cut(s)	384
HpyCH4V	TGCA	6 cut(s)	47, 353, 475, 500, 578, 609
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 330, 592
HpyF3I	CTNAG	4 cut(s)	211, 254, 263, 337
HpySE526I	ACGT	1 cut(s)	384
Hsp92I	GRCGYC	1 cut(s)	384
Hsp92II	CATG	3 cut(s)	361, 448, 643
Ksp22I	TGATCA	1 cut(s)	70
Kzo9I	GATC	2 cut(s)	70, 506
LguI	GCTCTTC	1 cut(s)	576
Lsp1109I	GCAGC	5 cut(s)	31, 59, 447, 573, 640
LweI	GCATC	2 cut(s)	317, 528
MaeI	CTAG	2 cut(s)	96, 596
MaeII	ACGT	1 cut(s)	384
MaeIII	GTNAC	1 cut(s)	414
MalI	GATC	2 cut(s)	72, 508
MboI	GATC	2 cut(s)	70, 506
MboII	GAAGA	3 cut(s)	176, 379, 593
MfeI	CAATTG	1 cut(s)	327
MluCI	AATT	3 cut(s)	206, 274, 327
MlyI	GAGTC	3 cut(s)	227, 265, 435
MnlI	CCTC	4 cut(s)	57, 354, 553, 640
MseI	TTAA	1 cut(s)	548
MspR9I	CCNGG	1 cut(s)	203
MunI	CAATTG	1 cut(s)	327
MvaI	CCWGG	1 cut(s)	203
MwoI	GCNNNNNNNGC	3 cut(s)	53, 330, 592
NdeII	GATC	2 cut(s)	70, 506
NheI	GCTAGC	1 cut(s)	595
NlaIII	CATG	3 cut(s)	361, 448, 643
NlaIV	GGNNCC	1 cut(s)	534
PagI	TCATGA	1 cut(s)	639
PciSI	GCTCTTC	1 cut(s)	576
PfeI	GAWTC	2 cut(s)	196, 512
PflMI	CCANNNNNTGG	1 cut(s)	484
PfoI	TCCNGGA	1 cut(s)	201
PkrI	GCNGC	5 cut(s)	46, 49, 462, 588, 630
PleI	GAGTC	3 cut(s)	226, 264, 435
PpsI	GAGTC	3 cut(s)	226, 264, 435
Psp6I	CCWGG	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	201
PspN4I	GGNNCC	1 cut(s)	534
PspPI	GGNCC	1 cut(s)	532
PstI	CTGCAG	1 cut(s)	49
RsaI	GTAC	2 cut(s)	142, 149
RsaNI	GTAC	2 cut(s)	141, 148
SapI	GCTCTTC	1 cut(s)	576
SaqAI	TTAA	1 cut(s)	548
SatI	GCNGC	5 cut(s)	45, 48, 461, 587, 629
Sau3AI	GATC	2 cut(s)	70, 506
Sau96I	GGNCC	1 cut(s)	532
ScaI	AGTACT	1 cut(s)	142
SchI	GAGTC	3 cut(s)	227, 265, 435
ScrFI	CCNGG	1 cut(s)	203
SfaNI	GCATC	2 cut(s)	317, 528
SfcI	CTRYAG	1 cut(s)	45
SinI	GGWCC	1 cut(s)	532
SmlI	CTYRAG	2 cut(s)	59, 590
SmoI	CTYRAG	2 cut(s)	59, 590
SpeI	ACTAGT	1 cut(s)	95
Sse9I	AATT	3 cut(s)	206, 274, 327
SspMI	CTAG	2 cut(s)	96, 596
StyD4I	CCNGG	1 cut(s)	201
StyI	CCWWGG	2 cut(s)	319, 375
TaaI	ACNGT	1 cut(s)	145
TaiI	ACGT	1 cut(s)	387
TasI	AATT	3 cut(s)	206, 274, 327
TatI	WGTACW	2 cut(s)	140, 147
TfiI	GAWTC	2 cut(s)	196, 512
Tru1I	TTAA	1 cut(s)	548
Tru9I	TTAA	1 cut(s)	548
TscAI	CASTG	1 cut(s)	258
TseI	GCWGC	5 cut(s)	44, 47, 460, 586, 628
TspDTI	ATGAA	1 cut(s)	656
TspRI	CASTG	1 cut(s)	258
Van91I	CCANNNNNTGG	1 cut(s)	484
VpaK11BI	GGWCC	1 cut(s)	532
XapI	RAATTY	2 cut(s)	206, 274
XcmI	CCANNNNNNNNNTGG	1 cut(s)	326
XmiI	GTMKAC	1 cut(s)	381
XspI	CTAG	2 cut(s)	96, 596
ZraI	GACGTC	1 cut(s)	385
ZrmI	AGTACT	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.