Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8051088.1

Orthogroup ID

OG0008065

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 543

Gene Structure 542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8051088.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 542 bp

atgctcaatggttccattccgaaaagcatggctcaccttaatcggctaacgactctggatctctctcacaatcatctctcaggacccattccagggtctgtgatctcagggatgaaaagcatgcagatatatttgaatttctcatacaatttcttggatggcagcattccagacgagcttggcatgttggaaatggtgcaggccattgacatttccaacaataatctttcagggatgattcctgtagcactagaaggctgcaggaatttgtactctcttgatctgtcaggtaacaaactttcagggccaattcaagctgaagtttttgctaagatggacaccttcacaagcttgaacctttcaaggaatcacttagatggtgaactcccagaaaagttgacaaatctgaagcatcttagctcccttgatctttcccagaattttctgacgggagttatccgtgagagctttaccaattttaccagcttgaaacacttgaacctctctttcaatcaacttgaaggccctgttccagacaccgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0006898 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009595 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010359 GO:0012505 GO:0016020 GO:0016043 GO:0016045 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022898 GO:0023052 GO:0031410 GO:0031982 GO:0032409 GO:0032412 GO:0032879 GO:0033036 GO:0033037 GO:0033554 GO:0034762 GO:0034765 GO:0036211 GO:0038023 GO:0042545 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043269 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051606 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0060089 GO:0065007 GO:0065009 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098542 GO:0098543 GO:0098581 GO:0098657 GO:0140096 GO:1901564 GO:1903959

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

181

Amino Acids

19.81

Weight (kDa)

5.39

Isoelectric Point (pI)

12.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46330 AT5G46330
fragaria_vesca	FvH4_3g06100
malus_domestica	MD05G1289000.v1.1
prunus_persica	Prupe.4G076500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0013311
rosa_laevigata	RLG00000032007 RLG00000032011
rosa_multiflora	Rmu_co8051088.1_g000001 Rmu_sc0003458.1_g000007 Rmu_sc0003458.1_g000011 Rmu_sc0004521.1_g000021 Rmu_sc0007948.1_g000008
rosa_roxburghii	Rroxscaffold_1G00063230
rosa_rugosa	Rorug05G0008800
rosa_samantha	Rh5AG103400 Rh5AG103500 Rh5AG104200 Rh5BG100200 Rh5CG111400 Rh5CG111800 Rh5DG099000
rosa_wichuraiana	Rw5G009030 Rw5G009070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	66
AcsI	RAATTY	3 cut(s)	136, 265, 439
AcuI	CTGAAG	2 cut(s)	339, 428
AfaI	GTAC	1 cut(s)	272
AfiI	CCNNNNNNNGG	3 cut(s)	92, 93, 539
AgsI	TTSAA	8 cut(s)	136, 314, 355, 363, 490, 499, 511, 521
AjnI	CCWGG	1 cut(s)	91
AluBI	AGCT	6 cut(s)	178, 317, 351, 420, 468, 486
AluI	AGCT	6 cut(s)	178, 317, 351, 420, 468, 486
AlwI	GGATC	1 cut(s)	66
AlwNI	CAGNNNCTG	1 cut(s)	98
AoxI	GGCC	3 cut(s)	201, 305, 523
ApeKI	GCWGC	2 cut(s)	162, 258
ApoI	RAATTY	3 cut(s)	136, 265, 439
AspS9I	GGNCC	3 cut(s)	83, 305, 524
AsuHPI	GGTGA	2 cut(s)	26, 392
AvaII	GGWCC	1 cut(s)	83
BbvI	GCAGC	2 cut(s)	174, 245
BccI	CCATC	3 cut(s)	152, 328, 371
BciT130I	CCWGG	1 cut(s)	93
BfaI	CTAG	1 cut(s)	251
BfmI	CTRYAG	2 cut(s)	243, 259
BisI	GCNGC	2 cut(s)	163, 259
BlsI	GCNGC	2 cut(s)	164, 260
Bme1390I	CCNGG	1 cut(s)	93
Bme18I	GGWCC	1 cut(s)	83
BmgT120I	GGNCC	3 cut(s)	83, 305, 524
BmiI	GGNNCC	2 cut(s)	13, 85
BmrFI	CCNGG	1 cut(s)	93
BmsI	GCATC	1 cut(s)	421
BsaJI	CCNNGG	1 cut(s)	92
Bsc4I	CCNNNNNNNGG	3 cut(s)	92, 93, 539
BseBI	CCWGG	1 cut(s)	93
BseDI	CCNNGG	1 cut(s)	92
BseGI	GGATG	3 cut(s)	117, 163, 240
BseLI	CCNNNNNNNGG	3 cut(s)	92, 93, 539
BseMII	CTCAG	2 cut(s)	93, 120
BseXI	GCAGC	2 cut(s)	174, 245
BsgI	GTGCAG	1 cut(s)	218
BshFI	GGCC	3 cut(s)	203, 307, 525
BsiSI	CCGG	1 cut(s)	540
BslI	CCNNNNNNNGG	3 cut(s)	92, 93, 539
BsmI	GAATGC	1 cut(s)	165
BsnI	GGCC	3 cut(s)	203, 307, 525
Bsp143I	GATC	4 cut(s)	58, 102, 280, 427
BspANI	GGCC	3 cut(s)	203, 307, 525
BspCNI	CTCAG	2 cut(s)	92, 119
BspLI	GGNNCC	2 cut(s)	13, 85
BspMAI	CTGCAG	1 cut(s)	263
BspPI	GGATC	1 cut(s)	66
BssECI	CCNNGG	1 cut(s)	92
BssMI	GATC	4 cut(s)	58, 102, 280, 427
Bst2UI	CCWGG	1 cut(s)	93
BstC8I	GCNNGC	2 cut(s)	122, 201
BstDEI	CTNAG	5 cut(s)	79, 106, 330, 373, 416
BstF5I	GGATG	3 cut(s)	117, 163, 240
BstKTI	GATC	4 cut(s)	61, 105, 283, 430
BstMBI	GATC	4 cut(s)	58, 102, 280, 427
BstNI	CCWGG	1 cut(s)	93
BstNSI	RCATGY	2 cut(s)	124, 187
BstSCI	CCNGG	1 cut(s)	91
BstSFI	CTRYAG	2 cut(s)	243, 259
BstV1I	GCAGC	2 cut(s)	174, 245
BstX2I	RGATCY	1 cut(s)	58
BstYI	RGATCY	1 cut(s)	58
BsuRI	GGCC	3 cut(s)	203, 307, 525
BtsCI	GGATG	3 cut(s)	117, 163, 240
Cac8I	GCNNGC	2 cut(s)	122, 201
CaiI	CAGNNNCTG	1 cut(s)	98
Cfr13I	GGNCC	3 cut(s)	83, 305, 524
Csp6I	GTAC	1 cut(s)	271
CviAII	CATG	3 cut(s)	28, 121, 184
CviQI	GTAC	1 cut(s)	271
DdeI	CTNAG	5 cut(s)	79, 106, 330, 373, 416
DpnI	GATC	4 cut(s)	60, 104, 282, 429
DpnII	GATC	4 cut(s)	58, 102, 280, 427
Eco47I	GGWCC	1 cut(s)	83
Eco57I	CTGAAG	2 cut(s)	339, 428
EcoO109I	RGGNCCY	2 cut(s)	83, 524
EcoRII	CCWGG	1 cut(s)	91
FaeI	CATG	3 cut(s)	31, 124, 187
FaiI	YATR	5 cut(s)	29, 122, 130, 145, 185
FatI	CATG	3 cut(s)	27, 120, 183
Fnu4HI	GCNGC	2 cut(s)	163, 259
FokI	GGATG	3 cut(s)	124, 170, 247
Fsp4HI	GCNGC	2 cut(s)	163, 259
FspBI	CTAG	1 cut(s)	251
GluI	GCNGC	2 cut(s)	163, 259
HaeIII	GGCC	3 cut(s)	203, 307, 525
HapII	CCGG	1 cut(s)	540
Hin1II	CATG	3 cut(s)	31, 124, 187
HincII	GTYRAC	1 cut(s)	399
HindII	GTYRAC	1 cut(s)	399
HindIII	AAGCTT	1 cut(s)	349
HinfI	GANTC	3 cut(s)	52, 238, 367
HpaII	CCGG	1 cut(s)	540
HphI	GGTGA	2 cut(s)	26, 392
Hpy166II	GTNNAC	2 cut(s)	383, 399
Hpy188I	TCNGA	3 cut(s)	21, 408, 447
Hpy188III	TCNNGA	5 cut(s)	56, 81, 170, 278, 533
Hpy8I	GTNNAC	2 cut(s)	383, 399
HpyAV	CCTTC	3 cut(s)	248, 352, 515
HpyCH4V	TGCA	3 cut(s)	124, 199, 261
HpyF3I	CTNAG	5 cut(s)	79, 106, 330, 373, 416
Hsp92II	CATG	3 cut(s)	31, 124, 187
Kzo9I	GATC	4 cut(s)	58, 102, 280, 427
LmnI	GCTCC	1 cut(s)	425
Lsp1109I	GCAGC	2 cut(s)	174, 245
LweI	GCATC	1 cut(s)	421
MaeI	CTAG	1 cut(s)	251
MaeIII	GTNAC	1 cut(s)	290
MalI	GATC	4 cut(s)	60, 104, 282, 429
MboI	GATC	4 cut(s)	58, 102, 280, 427
MflI	RGATCY	1 cut(s)	58
MluCI	AATT	6 cut(s)	136, 148, 265, 309, 439, 475
MlyI	GAGTC	1 cut(s)	46
MmeI	TCCRAC	2 cut(s)	168, 240
MnlI	CCTC	1 cut(s)	512
MseI	TTAA	1 cut(s)	39
MslI	CAYNNNNRTG	1 cut(s)	375
MspI	CCGG	1 cut(s)	540
MspR9I	CCNGG	1 cut(s)	93
Mva1269I	GAATGC	1 cut(s)	165
MvaI	CCWGG	1 cut(s)	93
NdeII	GATC	4 cut(s)	58, 102, 280, 427
NlaIII	CATG	3 cut(s)	31, 124, 187
NlaIV	GGNNCC	2 cut(s)	13, 85
NspI	RCATGY	2 cut(s)	124, 187
PaeI	GCATGC	1 cut(s)	124
PctI	GAATGC	1 cut(s)	165
PfeI	GAWTC	2 cut(s)	238, 367
PkrI	GCNGC	2 cut(s)	164, 260
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
PpuMI	RGGWCCY	1 cut(s)	83
Psp5II	RGGWCCY	1 cut(s)	83
Psp6I	CCWGG	1 cut(s)	91
PspGI	CCWGG	1 cut(s)	91
PspN4I	GGNNCC	2 cut(s)	13, 85
PspPI	GGNCC	3 cut(s)	83, 305, 524
PspPPI	RGGWCCY	1 cut(s)	83
PstI	CTGCAG	1 cut(s)	263
PstNI	CAGNNNCTG	1 cut(s)	98
PsuI	RGATCY	1 cut(s)	58
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
RseI	CAYNNNNRTG	1 cut(s)	375
SaqAI	TTAA	1 cut(s)	39
SatI	GCNGC	2 cut(s)	163, 259
Sau3AI	GATC	4 cut(s)	58, 102, 280, 427
Sau96I	GGNCC	3 cut(s)	83, 305, 524
SchI	GAGTC	1 cut(s)	46
ScrFI	CCNGG	1 cut(s)	93
SfaNI	GCATC	1 cut(s)	421
SfcI	CTRYAG	2 cut(s)	243, 259
SinI	GGWCC	1 cut(s)	83
SmiMI	CAYNNNNRTG	1 cut(s)	375
SphI	GCATGC	1 cut(s)	124
Sse9I	AATT	6 cut(s)	136, 148, 265, 309, 439, 475
SspMI	CTAG	1 cut(s)	251
StyD4I	CCNGG	1 cut(s)	91
TasI	AATT	6 cut(s)	136, 148, 265, 309, 439, 475
TatI	WGTACW	1 cut(s)	270
TfiI	GAWTC	2 cut(s)	238, 367
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TseI	GCWGC	2 cut(s)	162, 258
TspDTI	ATGAA	1 cut(s)	128
TspGWI	ACGGA	1 cut(s)	449
VpaK11BI	GGWCC	1 cut(s)	83
XapI	RAATTY	3 cut(s)	136, 265, 439
XceI	RCATGY	2 cut(s)	124, 187
XspI	CTAG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.