Rh5CG111400
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
9162675 .. 9162962
288 bp
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UTR
Exon/CDS
Intron
Rh5CG111400.1

Sequence Viewer

Length: 288 bp
ATGGAAGAGAATGGGCTGCCAATGAGCTTGCACCAACTAGTGGAGGAAGCCCTTGCAAACGGATCAGATTCGCTTCTTGAAGTTCTGGACCCATTGCTAACTTCAAATATCTCCAAGGAACAGGAGGCAAGTGCAGAAGAGCTGCTCAAGCTAGCCTTGTTTTGCACCAACCAAAATCCCGAGGAGCGACCTATCGTGAATGAGGTGTTGTCTGCTCTTTTGAAGCTGAAAAAGGCAATATGGTTCAAGAACCATGGTCATAGTATTTCTCAGAACTATGAATCTTGA

Protein Analysis

95

Amino Acids

10.6

Weight (kDa)

4.69

Isoelectric Point (pI)

36.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 40
AclWI GGATC 1 cut(s) 70
AfiI CCNNNNNNNGG 1 cut(s) 40
AgsI TTSAA 4 cut(s) 80, 105, 223, 247
AhlI ACTAGT 1 cut(s) 37
AluBI AGCT 4 cut(s) 27, 142, 151, 226
AluI AGCT 4 cut(s) 27, 142, 151, 226
AlwI GGATC 1 cut(s) 70
Ama87I CYCGRG 1 cut(s) 179
ApeKI GCWGC 2 cut(s) 16, 142
AspS9I GGNCC 1 cut(s) 88
AsuNHI GCTAGC 1 cut(s) 151
AvaI CYCGRG 1 cut(s) 179
AvaII GGWCC 1 cut(s) 88
BbvI GCAGC 2 cut(s) 3, 129
BcuI ACTAGT 1 cut(s) 37
BfaI CTAG 2 cut(s) 38, 152
BisI GCNGC 2 cut(s) 17, 143
BlsI GCNGC 2 cut(s) 18, 144
Bme18I GGWCC 1 cut(s) 88
BmeT110I CYCGRG 1 cut(s) 179
BmgT120I GGNCC 1 cut(s) 88
BmiI GGNNCC 1 cut(s) 90
BmtI GCTAGC 1 cut(s) 155
BpuEI CTTGAG 1 cut(s) 131
BsaJI CCNNGG 3 cut(s) 114, 180, 253
Bsc4I CCNNNNNNNGG 1 cut(s) 40
Bse3DI GCAATG 1 cut(s) 92
BseDI CCNNGG 3 cut(s) 114, 180, 253
BseLI CCNNNNNNNGG 1 cut(s) 40
BseMI GCAATG 1 cut(s) 92
BseMII CTCAG 1 cut(s) 284
BseRI GAGGAG 1 cut(s) 197
BseXI GCAGC 2 cut(s) 3, 129
BsgI GTGCAG 1 cut(s) 153
BsiHKCI CYCGRG 1 cut(s) 179
BslI CCNNNNNNNGG 1 cut(s) 40
BsoBI CYCGRG 1 cut(s) 179
Bsp143I GATC 1 cut(s) 62
Bsp19I CCATGG 1 cut(s) 253
BspCNI CTCAG 1 cut(s) 283
BspLI GGNNCC 1 cut(s) 90
BspOI GCTAGC 1 cut(s) 155
BspPI GGATC 1 cut(s) 70
BspQI GCTCTTC 1 cut(s) 132
BsrDI GCAATG 1 cut(s) 92
BssECI CCNNGG 3 cut(s) 114, 180, 253
BssMI GATC 1 cut(s) 62
BssT1I CCWWGG 2 cut(s) 114, 253
Bst6I CTCTTC 1 cut(s) 132
BstC8I GCNNGC 2 cut(s) 29, 153
BstDEI CTNAG 1 cut(s) 270
BstDSI CCRYGG 1 cut(s) 253
BstKTI GATC 1 cut(s) 65
BstMBI GATC 1 cut(s) 62
BstMWI GCNNNNNNNGC 1 cut(s) 148
BstV1I GCAGC 2 cut(s) 3, 129
BtgI CCRYGG 1 cut(s) 253
Cac8I GCNNGC 2 cut(s) 29, 153
Cfr13I GGNCC 1 cut(s) 88
CviAII CATG 1 cut(s) 254
CviJI RGCY 7 cut(s) 16, 27, 50, 142, 151, 155, 226
CviKI_1 RGCY 7 cut(s) 16, 27, 50, 142, 151, 155, 226
DdeI CTNAG 1 cut(s) 270
DpnI GATC 1 cut(s) 64
DpnII GATC 1 cut(s) 62
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
Eco130I CCWWGG 2 cut(s) 114, 253
Eco47I GGWCC 1 cut(s) 88
Eco88I CYCGRG 1 cut(s) 179
EcoT14I CCWWGG 2 cut(s) 114, 253
ErhI CCWWGG 2 cut(s) 114, 253
FaeI CATG 1 cut(s) 257
FaiI YATR 4 cut(s) 241, 255, 261, 279
FalI AAGNNNNNCTT 2 cut(s) 140, 172
FatI CATG 1 cut(s) 253
Fnu4HI GCNGC 2 cut(s) 17, 143
Fsp4HI GCNGC 2 cut(s) 17, 143
FspBI CTAG 2 cut(s) 38, 152
GluI GCNGC 2 cut(s) 17, 143
Hin1II CATG 1 cut(s) 257
HinfI GANTC 2 cut(s) 68, 281
Hpy188I TCNGA 2 cut(s) 67, 273
Hpy188III TCNNGA 6 cut(s) 77, 86, 179, 196, 247, 285
HpyCH4V TGCA 4 cut(s) 31, 56, 134, 165
HpyF10VI GCNNNNNNNGC 1 cut(s) 148
HpyF3I CTNAG 1 cut(s) 270
Hsp92II CATG 1 cut(s) 257
Kzo9I GATC 1 cut(s) 62
LguI GCTCTTC 1 cut(s) 132
LmnI GCTCC 1 cut(s) 184
LpnPI CCDG 2 cut(s) 71, 107
Lsp1109I GCAGC 2 cut(s) 3, 129
MaeI CTAG 2 cut(s) 38, 152
MalI GATC 1 cut(s) 64
MboI GATC 1 cut(s) 62
MboII GAAGA 2 cut(s) 17, 149
MnlI CCTC 4 cut(s) 37, 118, 175, 196
MwoI GCNNNNNNNGC 1 cut(s) 148
NcoI CCATGG 1 cut(s) 253
NdeII GATC 1 cut(s) 62
NheI GCTAGC 1 cut(s) 151
NlaIII CATG 1 cut(s) 257
NlaIV GGNNCC 1 cut(s) 90
PciSI GCTCTTC 1 cut(s) 132
PfeI GAWTC 2 cut(s) 68, 281
PflMI CCANNNNNTGG 1 cut(s) 40
PkrI GCNGC 2 cut(s) 18, 144
PspN4I GGNNCC 1 cut(s) 90
PspPI GGNCC 1 cut(s) 88
SapI GCTCTTC 1 cut(s) 132
SatI GCNGC 2 cut(s) 17, 143
Sau3AI GATC 1 cut(s) 62
Sau96I GGNCC 1 cut(s) 88
SetI ASST 6 cut(s) 29, 144, 153, 193, 207, 228
SinI GGWCC 1 cut(s) 88
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
SpeI ACTAGT 1 cut(s) 37
SspMI CTAG 2 cut(s) 38, 152
StyI CCWWGG 2 cut(s) 114, 253
TfiI GAWTC 2 cut(s) 68, 281
TseI GCWGC 2 cut(s) 16, 142
TspGWI ACGGA 1 cut(s) 75
Van91I CCANNNNNTGG 1 cut(s) 40
VpaK11BI GGWCC 1 cut(s) 88
XspI CTAG 2 cut(s) 38, 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.