Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0008065

Physical Location & Seq

Genomic Coordinates Reverse (-)

9522156 .. 9522506

Gene Structure 351 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG103400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGTCTGCCGAGTTTGCATACATGAGGAAAATCACAACCAAGGTAGACGTCTTCAGCTTTGGTGTAATAGTGATGGAGTTACTGACAAGACAAAGGCCAACAGGACTCATGGAAGGAAATGGGCTGCCAATGAGCTTGCACCAAGTAGTGGAGAAAGCCCTTGCAGATGGATCAGATTCGCTTCTTGAAGTTCTGGACCCGATGCTAACTTTAAATATCTCCGAGGAACAGGTGGCAAATGCAGAAGAGCTGCTCAAGCTAGCCTTGTTTTGCACCAACCAAAATCCCGAGCAGCGACCTATCATGAATGAGGTGTTGTCTGCTCTTTTGAAGCTGAAAAAGGCAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0006898 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009595 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010359 GO:0012505 GO:0016020 GO:0016043 GO:0016045 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022898 GO:0023052 GO:0031410 GO:0031982 GO:0032409 GO:0032412 GO:0032879 GO:0033036 GO:0033037 GO:0033554 GO:0034762 GO:0034765 GO:0036211 GO:0038023 GO:0042545 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043269 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051606 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0060089 GO:0065007 GO:0065009 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098542 GO:0098543 GO:0098581 GO:0098657 GO:0140096 GO:1901564 GO:1903959

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

116

Amino Acids

12.89

Weight (kDa)

4.96

Isoelectric Point (pI)

32.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	1 - 109	1.7e-06	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	7 - 107	9.6e-07	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46330 AT5G46330
fragaria_vesca	FvH4_3g06100
malus_domestica	MD05G1289000.v1.1
prunus_persica	Prupe.4G076500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0013311
rosa_laevigata	RLG00000032007 RLG00000032011
rosa_multiflora	Rmu_co8051088.1_g000001 Rmu_sc0003458.1_g000007 Rmu_sc0003458.1_g000011 Rmu_sc0004521.1_g000021 Rmu_sc0007948.1_g000008
rosa_roxburghii	Rroxscaffold_1G00063230
rosa_rugosa	Rorug05G0008800
rosa_samantha	Rh5AG103400 Rh5AG103500 Rh5AG104200 Rh5BG100200 Rh5CG111400 Rh5CG111800 Rh5DG099000
rosa_wichuraiana	Rw5G009030 Rw5G009070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	51
AccB7I	CCANNNNNTGG	1 cut(s)	148
AccI	GTMKAC	1 cut(s)	45
AclWI	GGATC	1 cut(s)	178
AcuI	CTGAAG	1 cut(s)	37
AcyI	GRCGYC	1 cut(s)	48
AfiI	CCNNNNNNNGG	1 cut(s)	148
AgsI	TTSAA	2 cut(s)	188, 331
AluBI	AGCT	5 cut(s)	57, 135, 250, 259, 334
AluI	AGCT	5 cut(s)	57, 135, 250, 259, 334
AlwI	GGATC	1 cut(s)	178
Ama87I	CYCGRG	1 cut(s)	287
AoxI	GGCC	1 cut(s)	95
ApeKI	GCWGC	3 cut(s)	124, 250, 292
AspS9I	GGNCC	1 cut(s)	196
AsuNHI	GCTAGC	1 cut(s)	259
AvaI	CYCGRG	1 cut(s)	287
AvaII	GGWCC	1 cut(s)	196
BbsI	GAAGAC	1 cut(s)	43
BbvI	GCAGC	3 cut(s)	111, 237, 304
BccI	CCATC	2 cut(s)	67, 161
BfaI	CTAG	1 cut(s)	260
BisI	GCNGC	3 cut(s)	125, 251, 293
BlsI	GCNGC	3 cut(s)	126, 252, 294
Bme18I	GGWCC	1 cut(s)	196
BmeT110I	CYCGRG	1 cut(s)	287
BmgT120I	GGNCC	1 cut(s)	196
BmiI	GGNNCC	1 cut(s)	198
BmsI	GCATC	1 cut(s)	192
BmtI	GCTAGC	1 cut(s)	263
BpiI	GAAGAC	1 cut(s)	43
BpuEI	CTTGAG	1 cut(s)	239
BsaHI	GRCGYC	1 cut(s)	48
BsaJI	CCNNGG	2 cut(s)	39, 222
Bsc4I	CCNNNNNNNGG	1 cut(s)	148
BseDI	CCNNGG	2 cut(s)	39, 222
BseLI	CCNNNNNNNGG	1 cut(s)	148
BseXI	GCAGC	3 cut(s)	111, 237, 304
BshFI	GGCC	1 cut(s)	97
BsiHKCI	CYCGRG	1 cut(s)	287
BslI	CCNNNNNNNGG	1 cut(s)	148
BsnI	GGCC	1 cut(s)	97
BsoBI	CYCGRG	1 cut(s)	287
Bsp143I	GATC	1 cut(s)	170
BspANI	GGCC	1 cut(s)	97
BspHI	TCATGA	1 cut(s)	303
BspLI	GGNNCC	1 cut(s)	198
BspOI	GCTAGC	1 cut(s)	263
BspPI	GGATC	1 cut(s)	178
BspQI	GCTCTTC	1 cut(s)	240
BssECI	CCNNGG	2 cut(s)	39, 222
BssMI	GATC	1 cut(s)	170
BssNI	GRCGYC	1 cut(s)	48
BssT1I	CCWWGG	1 cut(s)	39
Bst6I	CTCTTC	1 cut(s)	240
BstACI	GRCGYC	1 cut(s)	48
BstC8I	GCNNGC	2 cut(s)	137, 261
BstKTI	GATC	1 cut(s)	173
BstMBI	GATC	1 cut(s)	170
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 256
BstV1I	GCAGC	3 cut(s)	111, 237, 304
BstV2I	GAAGAC	1 cut(s)	43
BsuRI	GGCC	1 cut(s)	97
Cac8I	GCNNGC	2 cut(s)	137, 261
CciI	TCATGA	1 cut(s)	303
Cfr13I	GGNCC	1 cut(s)	196
CviAII	CATG	3 cut(s)	22, 109, 304
CviJI	RGCY	9 cut(s)	57, 97, 124, 135, 158, 250, 259, 263, 334
CviKI_1	RGCY	9 cut(s)	57, 97, 124, 135, 158, 250, 259, 263, 334
DpnI	GATC	1 cut(s)	172
DpnII	GATC	1 cut(s)	170
DraI	TTTAAA	1 cut(s)	213
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
Eco130I	CCWWGG	1 cut(s)	39
Eco47I	GGWCC	1 cut(s)	196
Eco57I	CTGAAG	1 cut(s)	37
Eco88I	CYCGRG	1 cut(s)	287
EcoT14I	CCWWGG	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	3 cut(s)	25, 112, 307
FaiI	YATR	5 cut(s)	19, 23, 110, 305, 349
FalI	AAGNNNNNCTT	2 cut(s)	248, 280
FatI	CATG	3 cut(s)	21, 108, 303
FblI	GTMKAC	1 cut(s)	45
Fnu4HI	GCNGC	3 cut(s)	125, 251, 293
Fsp4HI	GCNGC	3 cut(s)	125, 251, 293
FspBI	CTAG	1 cut(s)	260
GluI	GCNGC	3 cut(s)	125, 251, 293
HaeIII	GGCC	1 cut(s)	97
Hin1I	GRCGYC	1 cut(s)	48
Hin1II	CATG	3 cut(s)	25, 112, 307
HinfI	GANTC	2 cut(s)	105, 176
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	2 cut(s)	175, 223
Hpy188III	TCNNGA	4 cut(s)	185, 194, 287, 304
Hpy8I	GTNNAC	1 cut(s)	46
HpyAV	CCTTC	1 cut(s)	107
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	5 cut(s)	17, 139, 164, 242, 273
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 256
HpySE526I	ACGT	1 cut(s)	48
Hsp92I	GRCGYC	1 cut(s)	48
Hsp92II	CATG	3 cut(s)	25, 112, 307
Kzo9I	GATC	1 cut(s)	170
LguI	GCTCTTC	1 cut(s)	240
LpnPI	CCDG	3 cut(s)	87, 179, 215
Lsp1109I	GCAGC	3 cut(s)	111, 237, 304
LweI	GCATC	1 cut(s)	192
MaeI	CTAG	1 cut(s)	260
MaeII	ACGT	1 cut(s)	48
MaeIII	GTNAC	1 cut(s)	78
MalI	GATC	1 cut(s)	172
MboI	GATC	1 cut(s)	170
MboII	GAAGA	2 cut(s)	43, 257
MlyI	GAGTC	1 cut(s)	99
MnlI	CCTC	3 cut(s)	18, 217, 304
MseI	TTAA	1 cut(s)	212
MwoI	GCNNNNNNNGC	2 cut(s)	14, 256
NdeII	GATC	1 cut(s)	170
NheI	GCTAGC	1 cut(s)	259
NlaIII	CATG	3 cut(s)	25, 112, 307
NlaIV	GGNNCC	1 cut(s)	198
NmeAIII	GCCGAG	1 cut(s)	34
PagI	TCATGA	1 cut(s)	303
PciSI	GCTCTTC	1 cut(s)	240
PfeI	GAWTC	1 cut(s)	176
PflMI	CCANNNNNTGG	1 cut(s)	148
PkrI	GCNGC	3 cut(s)	126, 252, 294
PleI	GAGTC	1 cut(s)	99
PpsI	GAGTC	1 cut(s)	99
PspN4I	GGNNCC	1 cut(s)	198
PspPI	GGNCC	1 cut(s)	196
SapI	GCTCTTC	1 cut(s)	240
SaqAI	TTAA	1 cut(s)	212
SatI	GCNGC	3 cut(s)	125, 251, 293
Sau3AI	GATC	1 cut(s)	170
Sau96I	GGNCC	1 cut(s)	196
SchI	GAGTC	1 cut(s)	99
SfaNI	GCATC	1 cut(s)	192
SinI	GGWCC	1 cut(s)	196
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
SspMI	CTAG	1 cut(s)	260
StyI	CCWWGG	1 cut(s)	39
TaiI	ACGT	1 cut(s)	51
TfiI	GAWTC	1 cut(s)	176
Tru1I	TTAA	1 cut(s)	212
Tru9I	TTAA	1 cut(s)	212
TseI	GCWGC	3 cut(s)	124, 250, 292
TspDTI	ATGAA	1 cut(s)	320
Van91I	CCANNNNNTGG	1 cut(s)	148
VpaK11BI	GGWCC	1 cut(s)	196
XmiI	GTMKAC	1 cut(s)	45
XspI	CTAG	1 cut(s)	260
ZraI	GACGTC	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.