RLG00000036421

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0013779
Physical Location & Seq
Reverse (-)
80406042 .. 80406462
421 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036421

Sequence Viewer

Length: 321 bp
ATGGCTGAAGCCAAAACGCCTCTTCTTGTTGTGCTGTTCGACGTGCTTTATGGTGAGTTATGTCGCAAGATGGCCACCAGTTGCTGGACCCGATCTAGCGCTTTTTTCATTATTTGTGATGGGGCTCTTCCTTGGGGATTCTACGTGGTTGATGGTGATACCAAGTGGGCAGAAATTGGGGGTTTAAAGATGGTGTCGTTCTATCCTGCTGCGAGATCGAGGTGCTCTGGCTTCCGGGTGTTGGTGGCACAGATTGCATTGGCGACGGCTAGTCTTTGGCTGTGGAAGATGACAAAGAGGAAGGCTAGCCTAGGTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.7

Weight (kDa)

9.42

Isoelectric Point (pI)

55.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 84
AcoI YGGCCR 1 cut(s) 72
AcuI CTGAAG 1 cut(s) 27
AfeI AGCGCT 1 cut(s) 100
AfiI CCNNNNNNNGG 2 cut(s) 84, 241
AhdI GACNNNNNGTC 1 cut(s) 270
AjiI CACGTC 1 cut(s) 43
Alw21I GWGCWC 1 cut(s) 227
AlwNI CAGNNNCTG 1 cut(s) 84
Aor51HI AGCGCT 1 cut(s) 100
AoxI GGCC 1 cut(s) 72
ApeKI GCWGC 1 cut(s) 209
AspA2I CCTAGG 1 cut(s) 310
AspLEI GCGC 1 cut(s) 101
AspS9I GGNCC 1 cut(s) 87
AsuC2I CCSGG 1 cut(s) 236
AsuHPI GGTGA 2 cut(s) 65, 167
AsuNHI GCTAGC 1 cut(s) 305
AvaII GGWCC 1 cut(s) 87
AvrII CCTAGG 1 cut(s) 310
BalI TGGCCA 1 cut(s) 74
BanII GRGCYC 1 cut(s) 127
Bbv12I GWGCWC 1 cut(s) 227
BbvI GCAGC 1 cut(s) 196
BccI CCATC 4 cut(s) 64, 113, 146, 184
BceAI ACGGC 1 cut(s) 282
BcnI CCSGG 1 cut(s) 236
BfaI CTAG 4 cut(s) 96, 270, 306, 311
BfoI RGCGCY 1 cut(s) 102
BisI GCNGC 1 cut(s) 210
BlnI CCTAGG 1 cut(s) 310
BlsI GCNGC 1 cut(s) 211
Bme1390I CCNGG 1 cut(s) 236
Bme18I GGWCC 1 cut(s) 87
BmeRI GACNNNNNGTC 1 cut(s) 270
BmgBI CACGTC 1 cut(s) 43
BmgT120I GGNCC 1 cut(s) 87
BmiI GGNNCC 1 cut(s) 89
BmrFI CCNGG 1 cut(s) 236
BmtI GCTAGC 1 cut(s) 309
BpuMI CCSGG 1 cut(s) 236
BsaAI YACGTR 1 cut(s) 145
BsaJI CCNNGG 2 cut(s) 131, 310
Bsc4I CCNNNNNNNGG 2 cut(s) 84, 241
Bse1I ACTGG 1 cut(s) 78
BseDI CCNNGG 2 cut(s) 131, 310
BseLI CCNNNNNNNGG 2 cut(s) 84, 241
BseNI ACTGG 1 cut(s) 78
BseXI GCAGC 1 cut(s) 196
BshFI GGCC 1 cut(s) 74
BsiHKAI GWGCWC 1 cut(s) 227
BsiSI CCGG 1 cut(s) 235
BslI CCNNNNNNNGG 2 cut(s) 84, 241
BsnI GGCC 1 cut(s) 74
Bsp1286I GDGCHC 2 cut(s) 127, 227
Bsp143I GATC 2 cut(s) 92, 215
BspANI GGCC 1 cut(s) 74
BspLI GGNNCC 1 cut(s) 89
BspOI GCTAGC 1 cut(s) 309
BspQI GCTCTTC 1 cut(s) 132
BsrI ACTGG 1 cut(s) 78
BssECI CCNNGG 2 cut(s) 131, 310
BssMI GATC 2 cut(s) 92, 215
BssT1I CCWWGG 2 cut(s) 131, 310
Bst6I CTCTTC 2 cut(s) 27, 132
BstAPI GCANNNNNTGC 1 cut(s) 254
BstBAI YACGTR 1 cut(s) 145
BstC8I GCNNGC 1 cut(s) 307
BstH2I RGCGCY 1 cut(s) 102
BstHHI GCGC 1 cut(s) 101
BstKTI GATC 2 cut(s) 95, 218
BstMBI GATC 2 cut(s) 92, 215
BstMWI GCNNNNNNNGC 1 cut(s) 254
BstSCI CCNGG 1 cut(s) 234
BstV1I GCAGC 1 cut(s) 196
BsuRI GGCC 1 cut(s) 74
BtrI CACGTC 1 cut(s) 43
Cac8I GCNNGC 1 cut(s) 307
CaiI CAGNNNCTG 1 cut(s) 84
CfoI GCGC 1 cut(s) 101
Cfr13I GGNCC 1 cut(s) 87
CviJI RGCY 9 cut(s) 5, 11, 74, 125, 231, 269, 280, 305, 309
CviKI_1 RGCY 9 cut(s) 5, 11, 74, 125, 231, 269, 280, 305, 309
DpnI GATC 2 cut(s) 94, 217
DpnII GATC 2 cut(s) 92, 215
DraI TTTAAA 1 cut(s) 186
DriI GACNNNNNGTC 1 cut(s) 270
EaeI YGGCCR 1 cut(s) 72
Eam1104I CTCTTC 2 cut(s) 27, 132
Eam1105I GACNNNNNGTC 1 cut(s) 270
EarI CTCTTC 2 cut(s) 27, 132
Eco130I CCWWGG 2 cut(s) 131, 310
Eco24I GRGCYC 1 cut(s) 127
Eco47I GGWCC 1 cut(s) 87
Eco47III AGCGCT 1 cut(s) 100
Eco57I CTGAAG 1 cut(s) 27
EcoT14I CCWWGG 2 cut(s) 131, 310
EcoT38I GRGCYC 1 cut(s) 127
ErhI CCWWGG 2 cut(s) 131, 310
FaiI YATR 2 cut(s) 51, 61
Fnu4HI GCNGC 1 cut(s) 210
FriOI GRGCYC 1 cut(s) 127
Fsp4HI GCNGC 1 cut(s) 210
FspBI CTAG 4 cut(s) 96, 270, 306, 311
GlaI GCGC 1 cut(s) 100
GluI GCNGC 1 cut(s) 210
HaeII RGCGCY 1 cut(s) 102
HaeIII GGCC 1 cut(s) 74
HapII CCGG 1 cut(s) 235
HhaI GCGC 1 cut(s) 101
Hin6I GCGC 1 cut(s) 99
HinP1I GCGC 1 cut(s) 99
HinfI GANTC 1 cut(s) 138
HpaII CCGG 1 cut(s) 235
HphI GGTGA 2 cut(s) 65, 167
Hpy99I CGWCG 2 cut(s) 44, 268
HpyAV CCTTC 1 cut(s) 295
HpyCH4IV ACGT 2 cut(s) 42, 144
HpyCH4V TGCA 1 cut(s) 257
HpyF10VI GCNNNNNNNGC 1 cut(s) 254
HpySE526I ACGT 2 cut(s) 42, 144
HspAI GCGC 1 cut(s) 99
Kzo9I GATC 2 cut(s) 92, 215
LguI GCTCTTC 1 cut(s) 132
LpnPI CCDG 5 cut(s) 70, 91, 213, 219, 248
Lsp1109I GCAGC 1 cut(s) 196
MaeI CTAG 4 cut(s) 96, 270, 306, 311
MaeII ACGT 2 cut(s) 42, 144
MalI GATC 2 cut(s) 94, 217
MboI GATC 2 cut(s) 92, 215
MboII GAAGA 3 cut(s) 14, 119, 298
MhlI GDGCHC 2 cut(s) 127, 227
MlsI TGGCCA 1 cut(s) 74
MluCI AATT 1 cut(s) 174
MluNI TGGCCA 1 cut(s) 74
MnlI CCTC 3 cut(s) 30, 213, 291
Mox20I TGGCCA 1 cut(s) 74
MscI TGGCCA 1 cut(s) 74
MseI TTAA 1 cut(s) 185
Msp20I TGGCCA 1 cut(s) 74
MspI CCGG 1 cut(s) 235
MspR9I CCNGG 1 cut(s) 236
MwoI GCNNNNNNNGC 1 cut(s) 254
NciI CCSGG 1 cut(s) 236
NdeII GATC 2 cut(s) 92, 215
NheI GCTAGC 1 cut(s) 305
NlaIV GGNNCC 1 cut(s) 89
PciSI GCTCTTC 1 cut(s) 132
PfeI GAWTC 1 cut(s) 138
PflMI CCANNNNNTGG 1 cut(s) 84
PkrI GCNGC 1 cut(s) 211
Ppu21I YACGTR 1 cut(s) 145
PspN4I GGNNCC 1 cut(s) 89
PspPI GGNCC 1 cut(s) 87
PstNI CAGNNNCTG 1 cut(s) 84
SapI GCTCTTC 1 cut(s) 132
SaqAI TTAA 1 cut(s) 185
SatI GCNGC 1 cut(s) 210
Sau3AI GATC 2 cut(s) 92, 215
Sau96I GGNCC 1 cut(s) 87
ScrFI CCNGG 1 cut(s) 236
SduI GDGCHC 2 cut(s) 127, 227
SetI ASST 4 cut(s) 45, 147, 224, 316
SinI GGWCC 1 cut(s) 87
Sse9I AATT 1 cut(s) 174
SspMI CTAG 4 cut(s) 96, 270, 306, 311
StyD4I CCNGG 1 cut(s) 234
StyI CCWWGG 2 cut(s) 131, 310
TaiI ACGT 2 cut(s) 45, 147
TaqI TCGA 2 cut(s) 39, 218
TasI AATT 1 cut(s) 174
TfiI GAWTC 1 cut(s) 138
Tru1I TTAA 1 cut(s) 185
Tru9I TTAA 1 cut(s) 185
TseI GCWGC 1 cut(s) 209
TspDTI ATGAA 1 cut(s) 97
Van91I CCANNNNNTGG 1 cut(s) 84
VpaK11BI GGWCC 1 cut(s) 87
XmaJI CCTAGG 1 cut(s) 310
XspI CTAG 4 cut(s) 96, 270, 306, 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.