Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011178.1

Orthogroup ID

OG0013779

Physical Location & Seq

Genomic Coordinates Reverse (-)

2513 .. 2878

Gene Structure 366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011178.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

atgcttgcaaaacaggcttggcgtgttgtgaataatccaaactgcttggttgctcgaattttcaaggccaaatactttccggatacttctttttggttggctaattctcatgctactccttctttttcatggagaagtttattttccacaagagagtttttaaggcaaggctcttattggcaggtcggtgatggagctaatgtgaatatctggtctgattgttggctgccaggggtgccggattatagactaattgagaataatgtggtggctaatgaggttcaacaggtcagtgaccttattgctcctgcagggttgtggaatgtcaacttggttagacaaatttttcctgtagccgaggcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3 zf-RVT

Protein Analysis

121

Amino Acids

13.8

Weight (kDa)

7.8

Isoelectric Point (pI)

41.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013779)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000036421
rosa_multiflora	Rmu_co8321223.1_g000001 Rmu_sc0000441.1_g000003 Rmu_sc0000470.1_g000009 Rmu_sc0001694.1_g000026 Rmu_sc0006059.1_g000038 Rmu_sc0010720.1_g000005 Rmu_sc0011178.1_g000002 Rmu_sc0012409.1_g000004 Rmu_sc0012535.1_g000007 Rmu_ssc0000467.1_g000043
rosa_rugosa	Rorug02G0074200 Rorug05G0089300 Rorug05G0370300
rosa_samantha	Rh1DG240000 Rh4DG427300 Rh6CG287000 Rh6DG280000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	172
AccB1I	GGYRCC	1 cut(s)	235
AccIII	TCCGGA	1 cut(s)	79
AcsI	RAATTY	2 cut(s)	57, 342
AgsI	TTSAA	2 cut(s)	64, 284
AjnI	CCWGG	1 cut(s)	229
AjuI	GAANNNNNNNTTGG	2 cut(s)	314, 346
AluBI	AGCT	1 cut(s)	197
AluI	AGCT	1 cut(s)	197
Aor13HI	TCCGGA	1 cut(s)	79
AoxI	GGCC	1 cut(s)	66
ApeKI	GCWGC	1 cut(s)	226
ApoI	RAATTY	2 cut(s)	57, 342
AsuHPI	GGTGA	1 cut(s)	200
BanI	GGYRCC	1 cut(s)	235
BbvI	GCAGC	1 cut(s)	213
BccI	CCATC	1 cut(s)	185
BciT130I	CCWGG	1 cut(s)	231
BciVI	GTATCC	1 cut(s)	76
BfmI	CTRYAG	2 cut(s)	309, 351
BfuAI	ACCTGC	1 cut(s)	172
BfuI	GTATCC	1 cut(s)	76
BisI	GCNGC	1 cut(s)	227
BlsI	GCNGC	1 cut(s)	228
Bme1390I	CCNGG	1 cut(s)	231
BmiI	GGNNCC	1 cut(s)	237
BmrFI	CCNGG	1 cut(s)	231
BsaJI	CCNNGG	2 cut(s)	230, 357
BsaWI	WCCGGW	1 cut(s)	79
BsaXI	ACNNNNNCTCC	2 cut(s)	186, 216
BseAI	TCCGGA	1 cut(s)	79
BseBI	CCWGG	1 cut(s)	231
BseDI	CCNNGG	2 cut(s)	230, 357
BseXI	GCAGC	1 cut(s)	213
BshFI	GGCC	1 cut(s)	68
BshNI	GGYRCC	1 cut(s)	235
BsiSI	CCGG	2 cut(s)	80, 239
BsnI	GGCC	1 cut(s)	68
Bsp13I	TCCGGA	1 cut(s)	79
BspANI	GGCC	1 cut(s)	68
BspEI	TCCGGA	1 cut(s)	79
BspLI	GGNNCC	1 cut(s)	237
BspMAI	CTGCAG	1 cut(s)	313
BspMI	ACCTGC	1 cut(s)	172
BspT107I	GGYRCC	1 cut(s)	235
BssECI	CCNNGG	2 cut(s)	230, 357
Bst2UI	CCWGG	1 cut(s)	231
BstC8I	GCNNGC	1 cut(s)	6
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 235
BstNI	CCWGG	1 cut(s)	231
BstSCI	CCNGG	1 cut(s)	229
BstSFI	CTRYAG	2 cut(s)	309, 351
BstV1I	GCAGC	1 cut(s)	213
BsuI	GTATCC	1 cut(s)	76
BsuRI	GGCC	1 cut(s)	68
BtsIMutI	CAGTG	1 cut(s)	298
BveI	ACCTGC	1 cut(s)	172
Cac8I	GCNNGC	1 cut(s)	6
CviAII	CATG	2 cut(s)	110, 129
CviJI	RGCY	8 cut(s)	17, 68, 101, 171, 197, 226, 272, 356
CviKI_1	RGCY	8 cut(s)	17, 68, 101, 171, 197, 226, 272, 356
EcoRII	CCWGG	1 cut(s)	229
FaeI	CATG	2 cut(s)	113, 132
FaiI	YATR	4 cut(s)	111, 130, 246, 364
FatI	CATG	2 cut(s)	109, 128
Fnu4HI	GCNGC	1 cut(s)	227
Fsp4HI	GCNGC	1 cut(s)	227
GluI	GCNGC	1 cut(s)	227
HaeIII	GGCC	1 cut(s)	68
HapII	CCGG	2 cut(s)	80, 239
Hin1II	CATG	2 cut(s)	113, 132
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HpaII	CCGG	2 cut(s)	80, 239
HphI	GGTGA	1 cut(s)	200
Hpy166II	GTNNAC	1 cut(s)	328
Hpy188I	TCNGA	1 cut(s)	217
Hpy188III	TCNNGA	1 cut(s)	80
Hpy8I	GTNNAC	1 cut(s)	328
HpyAV	CCTTC	1 cut(s)	129
HpyCH4V	TGCA	2 cut(s)	8, 311
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 235
Hsp92II	CATG	2 cut(s)	113, 132
Kpn2I	TCCGGA	1 cut(s)	79
LmnI	GCTCC	2 cut(s)	194, 310
LpnPI	CCDG	9 cut(s)	93, 167, 196, 216, 243, 252, 272, 297, 321
Lsp1109I	GCAGC	1 cut(s)	213
MaeIII	GTNAC	1 cut(s)	293
MluCI	AATT	4 cut(s)	57, 103, 252, 342
MnlI	CCTC	2 cut(s)	271, 352
MroI	TCCGGA	1 cut(s)	79
MseI	TTAA	1 cut(s)	161
MspI	CCGG	2 cut(s)	80, 239
MspR9I	CCNGG	1 cut(s)	231
MvaI	CCWGG	1 cut(s)	231
MwoI	GCNNNNNNNGC	2 cut(s)	14, 235
NlaIII	CATG	2 cut(s)	113, 132
NlaIV	GGNNCC	1 cut(s)	237
NmuCI	GTSAC	1 cut(s)	293
PkrI	GCNGC	1 cut(s)	228
Psp6I	CCWGG	1 cut(s)	229
PspGI	CCWGG	1 cut(s)	229
PspN4I	GGNNCC	1 cut(s)	237
PstI	CTGCAG	1 cut(s)	313
SaqAI	TTAA	1 cut(s)	161
SatI	GCNGC	1 cut(s)	227
SbfI	CCTGCAGG	1 cut(s)	313
ScrFI	CCNGG	1 cut(s)	231
SdaI	CCTGCAGG	1 cut(s)	313
SetI	ASST	5 cut(s)	186, 199, 282, 291, 300
SfcI	CTRYAG	2 cut(s)	309, 351
Sse8387I	CCTGCAGG	1 cut(s)	313
Sse9I	AATT	4 cut(s)	57, 103, 252, 342
StyD4I	CCNGG	1 cut(s)	229
TaqI	TCGA	1 cut(s)	55
TasI	AATT	4 cut(s)	57, 103, 252, 342
Tru1I	TTAA	1 cut(s)	161
Tru9I	TTAA	1 cut(s)	161
TscAI	CASTG	1 cut(s)	298
TseFI	GTSAC	1 cut(s)	293
TseI	GCWGC	1 cut(s)	226
Tsp45I	GTSAC	1 cut(s)	293
TspDTI	ATGAA	1 cut(s)	117
TspRI	CASTG	1 cut(s)	298
XapI	RAATTY	2 cut(s)	57, 342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.