Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000467.1

Orthogroup ID

OG0013779

Physical Location & Seq

Genomic Coordinates Reverse (-)

155193 .. 155633

Gene Structure 441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000467.1_g000043.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atgttggctaaacaagcttggcctattcttaatgagccttcgtctcttattgctcaaatgtacaaagcaaaatattttctggatggatcattttgggaggctttacctcatgcttctccttcttactcgtggaggagtatattctccactagaaaccttttacgtaacagctactattggcaggtaggtattaggtctagcattgacatctttactgactgttgggttgcggctctccctgatggtaaacttgcagtgtcaattttagctatagcggaggtcagtacagtgagtgacttaattgtgagccaaggggcttggaatgttgctatgataaataggttgttctcggtggaggaggcagcagctatcactgctatcccattaagtagtcgcaatgtggtggaccggttggtgtatgttaggtccataattacctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3 zf-RVT

Protein Analysis

146

Amino Acids

16.32

Weight (kDa)

7.86

Isoelectric Point (pI)

42.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013779)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000036421
rosa_multiflora	Rmu_co8321223.1_g000001 Rmu_sc0000441.1_g000003 Rmu_sc0000470.1_g000009 Rmu_sc0001694.1_g000026 Rmu_sc0006059.1_g000038 Rmu_sc0010720.1_g000005 Rmu_sc0011178.1_g000002 Rmu_sc0012409.1_g000004 Rmu_sc0012535.1_g000007 Rmu_ssc0000467.1_g000043
rosa_rugosa	Rorug02G0074200 Rorug05G0089300 Rorug05G0370300
rosa_samantha	Rh1DG240000 Rh4DG427300 Rh6CG287000 Rh6DG280000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	172
AciI	CCGC	2 cut(s)	230, 275
AclWI	GGATC	1 cut(s)	94
AfaI	GTAC	2 cut(s)	62, 286
AgeI	ACCGGT	1 cut(s)	408
AluBI	AGCT	4 cut(s)	17, 171, 269, 368
AluI	AGCT	4 cut(s)	17, 171, 269, 368
Alw26I	GTCTC	1 cut(s)	48
AlwI	GGATC	1 cut(s)	94
AoxI	GGCC	1 cut(s)	20
ApeKI	GCWGC	2 cut(s)	362, 365
AsiGI	ACCGGT	1 cut(s)	408
AspS9I	GGNCC	2 cut(s)	406, 426
AvaII	GGWCC	2 cut(s)	406, 426
BauI	CACGAG	1 cut(s)	127
BbvI	GCAGC	2 cut(s)	374, 377
BccI	CCATC	2 cut(s)	77, 236
BcoDI	GTCTC	1 cut(s)	48
BfaI	CTAG	2 cut(s)	150, 198
BfmI	CTRYAG	1 cut(s)	270
BfuAI	ACCTGC	1 cut(s)	172
BisI	GCNGC	3 cut(s)	231, 363, 366
BlsI	GCNGC	3 cut(s)	232, 364, 367
Bme18I	GGWCC	2 cut(s)	406, 426
BmgT120I	GGNCC	2 cut(s)	406, 426
BsaAI	YACGTR	1 cut(s)	164
BsaJI	CCNNGG	1 cut(s)	310
BsaWI	WCCGGW	1 cut(s)	408
Bse118I	RCCGGY	1 cut(s)	408
Bse3DI	GCAATG	1 cut(s)	403
BseDI	CCNNGG	1 cut(s)	310
BseGI	GGATG	1 cut(s)	88
BseMI	GCAATG	1 cut(s)	403
BseRI	GAGGAG	2 cut(s)	148, 371
BseXI	GCAGC	2 cut(s)	374, 377
BshFI	GGCC	1 cut(s)	22
BshTI	ACCGGT	1 cut(s)	408
BsiSI	CCGG	1 cut(s)	409
BsmAI	GTCTC	1 cut(s)	48
BsmBI	CGTCTC	1 cut(s)	48
BsnI	GGCC	1 cut(s)	22
Bsp1407I	TGTACA	1 cut(s)	60
Bsp143I	GATC	1 cut(s)	86
BspACI	CCGC	2 cut(s)	230, 275
BspANI	GGCC	1 cut(s)	22
BspMI	ACCTGC	1 cut(s)	172
BspPI	GGATC	1 cut(s)	94
BsrDI	GCAATG	1 cut(s)	403
BsrFI	RCCGGY	1 cut(s)	408
BsrGI	TGTACA	1 cut(s)	60
BssAI	RCCGGY	1 cut(s)	408
BssECI	CCNNGG	1 cut(s)	310
BssMI	GATC	1 cut(s)	86
BssSI	CACGAG	1 cut(s)	127
BssT1I	CCWWGG	1 cut(s)	310
Bst2BI	CACGAG	1 cut(s)	127
Bst4CI	ACNGT	2 cut(s)	221, 289
BstAUI	TGTACA	1 cut(s)	60
BstBAI	YACGTR	1 cut(s)	164
BstF5I	GGATG	1 cut(s)	88
BstKTI	GATC	1 cut(s)	89
BstMAI	GTCTC	1 cut(s)	48
BstMBI	GATC	1 cut(s)	86
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 374
BstSFI	CTRYAG	1 cut(s)	270
BstSNI	TACGTA	1 cut(s)	164
BstV1I	GCAGC	2 cut(s)	374, 377
BsuRI	GGCC	1 cut(s)	22
BtsCI	GGATG	1 cut(s)	88
BtsI	GCAGTG	2 cut(s)	261, 372
BtsIMutI	CAGTG	3 cut(s)	261, 294, 372
BveI	ACCTGC	1 cut(s)	172
Cfr10I	RCCGGY	1 cut(s)	408
Cfr13I	GGNCC	2 cut(s)	406, 426
Csp6I	GTAC	2 cut(s)	61, 285
CspAI	ACCGGT	1 cut(s)	408
CviAII	CATG	1 cut(s)	110
CviQI	GTAC	2 cut(s)	61, 285
DpnI	GATC	1 cut(s)	88
DpnII	GATC	1 cut(s)	86
Eco105I	TACGTA	1 cut(s)	164
Eco130I	CCWWGG	1 cut(s)	310
Eco47I	GGWCC	2 cut(s)	406, 426
EcoT14I	CCWWGG	1 cut(s)	310
ErhI	CCWWGG	1 cut(s)	310
Esp3I	CGTCTC	1 cut(s)	48
FaeI	CATG	1 cut(s)	113
FaiI	YATR	6 cut(s)	111, 140, 272, 332, 420, 431
FatI	CATG	1 cut(s)	109
Fnu4HI	GCNGC	3 cut(s)	231, 363, 366
FokI	GGATG	1 cut(s)	95
Fsp4HI	GCNGC	3 cut(s)	231, 363, 366
FspBI	CTAG	2 cut(s)	150, 198
GluI	GCNGC	3 cut(s)	231, 363, 366
HaeIII	GGCC	1 cut(s)	22
HapII	CCGG	1 cut(s)	409
Hin1II	CATG	1 cut(s)	113
HindIII	AAGCTT	1 cut(s)	15
HpaII	CCGG	1 cut(s)	409
Hpy166II	GTNNAC	2 cut(s)	248, 406
Hpy188III	TCNNGA	1 cut(s)	80
Hpy8I	GTNNAC	2 cut(s)	248, 406
HpyAV	CCTTC	2 cut(s)	48, 129
HpyCH4III	ACNGT	2 cut(s)	221, 289
HpyCH4IV	ACGT	1 cut(s)	163
HpyCH4V	TGCA	1 cut(s)	254
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 374
HpySE526I	ACGT	1 cut(s)	163
Hsp92II	CATG	1 cut(s)	113
Kzo9I	GATC	1 cut(s)	86
LpnPI	CCDG	4 cut(s)	65, 167, 252, 422
Lsp1109I	GCAGC	2 cut(s)	374, 377
MaeI	CTAG	2 cut(s)	150, 198
MaeII	ACGT	1 cut(s)	163
MaeIII	GTNAC	2 cut(s)	164, 293
MalI	GATC	1 cut(s)	88
MboI	GATC	1 cut(s)	86
MluCI	AATT	3 cut(s)	261, 300, 432
MnlI	CCTC	6 cut(s)	91, 117, 126, 271, 349, 352
MseI	TTAA	3 cut(s)	30, 299, 386
MspI	CCGG	1 cut(s)	409
MwoI	GCNNNNNNNGC	2 cut(s)	14, 374
NdeII	GATC	1 cut(s)	86
NlaIII	CATG	1 cut(s)	113
NmuCI	GTSAC	1 cut(s)	293
PinAI	ACCGGT	1 cut(s)	408
PkrI	GCNGC	3 cut(s)	232, 364, 367
Ppu21I	YACGTR	1 cut(s)	164
PspPI	GGNCC	2 cut(s)	406, 426
RsaI	GTAC	2 cut(s)	62, 286
RsaNI	GTAC	2 cut(s)	61, 285
SaqAI	TTAA	3 cut(s)	30, 299, 386
SatI	GCNGC	3 cut(s)	231, 363, 366
Sau3AI	GATC	1 cut(s)	86
Sau96I	GGNCC	2 cut(s)	406, 426
SfcI	CTRYAG	1 cut(s)	270
SinI	GGWCC	2 cut(s)	406, 426
SnaBI	TACGTA	1 cut(s)	164
Sse9I	AATT	3 cut(s)	261, 300, 432
SsiI	CCGC	2 cut(s)	230, 275
SspI	AATATT	1 cut(s)	74
SspMI	CTAG	2 cut(s)	150, 198
StyI	CCWWGG	1 cut(s)	310
TaaI	ACNGT	2 cut(s)	221, 289
TaiI	ACGT	1 cut(s)	166
TasI	AATT	3 cut(s)	261, 300, 432
TatI	WGTACW	2 cut(s)	60, 284
TauI	GCSGC	1 cut(s)	233
Tru1I	TTAA	3 cut(s)	30, 299, 386
Tru9I	TTAA	3 cut(s)	30, 299, 386
TscAI	CASTG	3 cut(s)	261, 294, 379
TseFI	GTSAC	1 cut(s)	293
TseI	GCWGC	2 cut(s)	362, 365
Tsp45I	GTSAC	1 cut(s)	293
TspRI	CASTG	3 cut(s)	261, 294, 379
VpaK11BI	GGWCC	2 cut(s)	406, 426
XspI	CTAG	2 cut(s)	150, 198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.