Rmu_sc0010720.1_g000005

zinc-binding in reverse transcriptase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010720.1
OG0013779
Physical Location & Seq
Reverse (-)
10612 .. 10995
384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010720.1_g000005.1.cds

Sequence Viewer

Length: 384 bp
atgcttgccaagcaagcttggaaggtgatttcaaaccctgagtctttggtggcacagttgtataaagcacgttattatccatatggcaatttttggaatgttaatgcgcatgctacaccttcttactcttggcgtagtatatttgctataagggagtttattcaaactggtgctttttggcaggtagggactggacataatgtttctgtatggaactatgcttggatacccaagctaccttctcataaacctcaggttgctttagtgagtcaaccagatgtacagacggtgaatgaactgattatacctcccaataatttggatgagcacaaggtacgctccatctttgttcctgatgctgcagctatctttctattcccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

127

Amino Acids

14.53

Weight (kDa)

9.3

Isoelectric Point (pI)

33.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 108
Acc36I ACCTGC 1 cut(s) 172
AfaI GTAC 2 cut(s) 282, 336
AgsI TTSAA 2 cut(s) 33, 164
AluBI AGCT 3 cut(s) 17, 235, 365
AluI AGCT 3 cut(s) 17, 235, 365
Alw21I GWGCWC 1 cut(s) 330
ApeKI GCWGC 2 cut(s) 359, 362
ArsI GACNNNNNNTTYG 2 cut(s) 26, 58
AspLEI GCGC 1 cut(s) 109
AsuHPI GGTGA 2 cut(s) 37, 301
AxyI CCTNAGG 1 cut(s) 252
Bbv12I GWGCWC 1 cut(s) 330
BbvI GCAGC 2 cut(s) 346, 374
BccI CCATC 1 cut(s) 350
BciVI GTATCC 1 cut(s) 219
BfmI CTRYAG 1 cut(s) 360
BfuAI ACCTGC 1 cut(s) 172
BfuI GTATCC 1 cut(s) 219
BisI GCNGC 2 cut(s) 360, 363
BlsI GCNGC 2 cut(s) 361, 364
BmsI GCATC 1 cut(s) 346
Bse1I ACTGG 2 cut(s) 172, 196
Bse21I CCTNAGG 1 cut(s) 252
BseGI GGATG 1 cut(s) 328
BseMII CTCAG 2 cut(s) 30, 266
BseNI ACTGG 2 cut(s) 172, 196
BseXI GCAGC 2 cut(s) 346, 374
BsiHKAI GWGCWC 1 cut(s) 330
BslFI GGGAC 1 cut(s) 202
BsmFI GGGAC 1 cut(s) 202
Bsp1286I GDGCHC 1 cut(s) 330
Bsp1407I TGTACA 1 cut(s) 280
BspCNI CTCAG 2 cut(s) 31, 265
BspMAI CTGCAG 1 cut(s) 364
BspMI ACCTGC 1 cut(s) 172
BsrGI TGTACA 1 cut(s) 280
BsrI ACTGG 2 cut(s) 172, 196
Bst4CI ACNGT 2 cut(s) 57, 289
BstAUI TGTACA 1 cut(s) 280
BstC8I GCNNGC 3 cut(s) 6, 15, 111
BstDEI CTNAG 2 cut(s) 39, 252
BstF5I GGATG 1 cut(s) 328
BstHHI GCGC 1 cut(s) 109
BstMWI GCNNNNNNNGC 2 cut(s) 10, 14
BstNSI RCATGY 1 cut(s) 113
BstSFI CTRYAG 1 cut(s) 360
BstV1I GCAGC 2 cut(s) 346, 374
BstXI CCANNNNNNTGG 1 cut(s) 319
Bsu36I CCTNAGG 1 cut(s) 252
BsuI GTATCC 1 cut(s) 219
BtsCI GGATG 1 cut(s) 328
BveI ACCTGC 1 cut(s) 172
Cac8I GCNNGC 3 cut(s) 6, 15, 111
CfoI GCGC 1 cut(s) 109
Csp6I GTAC 2 cut(s) 281, 335
CviAII CATG 1 cut(s) 110
CviJI RGCY 3 cut(s) 17, 235, 365
CviKI_1 RGCY 3 cut(s) 17, 235, 365
CviQI GTAC 2 cut(s) 281, 335
DdeI CTNAG 2 cut(s) 39, 252
Eco81I CCTNAGG 1 cut(s) 252
FaeI CATG 1 cut(s) 113
FaqI GGGAC 1 cut(s) 202
FatI CATG 1 cut(s) 109
FauNDI CATATG 1 cut(s) 82
Fnu4HI GCNGC 2 cut(s) 360, 363
FokI GGATG 1 cut(s) 335
Fsp4HI GCNGC 2 cut(s) 360, 363
FspAI RTGCGCAY 1 cut(s) 108
FspI TGCGCA 1 cut(s) 108
GlaI GCGC 1 cut(s) 108
GluI GCNGC 2 cut(s) 360, 363
HhaI GCGC 1 cut(s) 109
Hin1II CATG 1 cut(s) 113
Hin6I GCGC 1 cut(s) 107
HinP1I GCGC 1 cut(s) 107
HincII GTYRAC 1 cut(s) 272
HindII GTYRAC 1 cut(s) 272
HindIII AAGCTT 1 cut(s) 15
HinfI GANTC 2 cut(s) 41, 268
HphI GGTGA 2 cut(s) 37, 301
Hpy166II GTNNAC 1 cut(s) 272
Hpy188III TCNNGA 1 cut(s) 353
Hpy8I GTNNAC 1 cut(s) 272
HpyAV CCTTC 3 cut(s) 16, 129, 249
HpyCH4III ACNGT 2 cut(s) 57, 289
HpyCH4IV ACGT 1 cut(s) 70
HpyCH4V TGCA 1 cut(s) 362
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 14
HpyF3I CTNAG 2 cut(s) 39, 252
HpySE526I ACGT 1 cut(s) 70
Hsp92II CATG 1 cut(s) 113
HspAI GCGC 1 cut(s) 107
LmnI GCTCC 1 cut(s) 344
LpnPI CCDG 7 cut(s) 51, 153, 167, 177, 239, 288, 366
Lsp1109I GCAGC 2 cut(s) 346, 374
LweI GCATC 1 cut(s) 346
MaeII ACGT 1 cut(s) 70
MhlI GDGCHC 1 cut(s) 330
MluCI AATT 2 cut(s) 88, 316
MlyI GAGTC 2 cut(s) 50, 277
MnlI CCTC 2 cut(s) 261, 318
MseI TTAA 1 cut(s) 102
MwoI GCNNNNNNNGC 2 cut(s) 10, 14
NdeI CATATG 1 cut(s) 82
NlaIII CATG 1 cut(s) 113
NsbI TGCGCA 1 cut(s) 108
NspI RCATGY 1 cut(s) 113
PaeI GCATGC 1 cut(s) 113
PkrI GCNGC 2 cut(s) 361, 364
PleI GAGTC 2 cut(s) 49, 276
PpsI GAGTC 2 cut(s) 49, 276
PsrI GAACNNNNNNTAC 2 cut(s) 288, 320
PstI CTGCAG 1 cut(s) 364
RsaI GTAC 2 cut(s) 282, 336
RsaNI GTAC 2 cut(s) 281, 335
SaqAI TTAA 1 cut(s) 102
SatI GCNGC 2 cut(s) 360, 363
SchI GAGTC 2 cut(s) 50, 277
SduI GDGCHC 1 cut(s) 330
SfaNI GCATC 1 cut(s) 346
SfcI CTRYAG 1 cut(s) 360
SphI GCATGC 1 cut(s) 113
Sse9I AATT 2 cut(s) 88, 316
TaaI ACNGT 2 cut(s) 57, 289
TaiI ACGT 1 cut(s) 73
TasI AATT 2 cut(s) 88, 316
TatI WGTACW 1 cut(s) 280
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TseI GCWGC 2 cut(s) 359, 362
TspDTI ATGAA 1 cut(s) 309
XceI RCATGY 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.