Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000739

Physical Location & Seq

Genomic Coordinates Reverse (-)

5887154 .. 5890493

Gene Structure 3340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0074200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1710 bp

ATGCCGCTAATACTCGAACTCGAAGATGAAGAACCTCCAATGGTGGCCAGCGACTTCACCCTTGCTGTCCAAAGTCCAACGTTGAAGAGGGAAGAACGCAAGCGCTTACAGCACGGCCCCCATTTCTCCAAATGGAAGGTTCTTGTTGCGCCTGGTGATTGGGAGGACTATTCAGCGGGCAAGGATGGAGCTGAAAGGTACAGAGTTCAAAACCTGCCTGGAAACGAGAGCCCAGGAGTGTATGAACTCGGAGTTGCTGTTCCGCACAGTGGTTCAGGCCGTGGGATTAAAGCGGATCAAATAGTCCCGGTTTATGTTGGACAAGCTGATAGTGCGAGGACAAGGCTTCAGCAGTATGGCCGGACAGGGGCTCATTTGGGGAGGTCATGCTCAGGGAATCCGAGTGAGCAAATCTGTAAGGGGCCTGGATTGATTGAGGAGATGCTGGACGGAGGATACTCCATTGTGTATAGATGGGCTCCTATGGGAACCAAAAGTGAGGCGGAAAGAACAGAAAGTCAGCTGCTTCATGCACTTAATTATGCGTGGAACACAAGGTTCAATGGTGCACGGCGCCCTGATGATGTCCTTCAGAAACTCAAGAAAATTTCCTCAAACCCTACCCTATTTACTATTATTGTCCCGAGGCCTCTACCTTCCAGACAGAAGCAAGTTGGTATTAGAATTAACTCCAGCAATCTGGTTTCAACAGAGGACAAGTTCAGTAACTATGCTGATAGGGAGAGCAGGAATATCATACCCCAAGTTTTCAAGTTTGGCAGATCACAGCCTAGGTTAGTTTTGGACGGAAGTGGAACTTGGGAAAATACTATAATTTGTGGGGTGGCTGTTGGTGATGGGTCCATATGTAGAAAGGCACCAGTTCAAGGAAGAAAGAGGTGTGCTGAACACAAAGGGACGAGGATTACTGGATTGATTACAGCTAGCAATGCCGACTCAAAATGCAGTTTTATCAGCAACAGAGAGTTGGTTTCATATAAAAGTGGCATTACTCAGGAGAACACTGAAATTTGTGGGGTGGCTGCAGGTGATGGGTCTACCTGTAGAAGGCCTCCAGTTCAAGGAAGACAGAGGTGTGCTGAACACAAAGGGATGAGGATTACTGGATCGATTACAGCTAGCAATGTCGACTCAAAATGCAGTTTTATCAGCAACAGAGAGTCTGTTTCATATAGAAGTGGCATTACTCAGGAGAACACTGAAATTTGTGGGGTGGTTACAGGTAATGGGTCTACTTGTAGAAGGCCTCCAGTTGCAGGAAATAAGAGGTGTGCTGAACACAAAGGGATGAGGATTACTGGATCGACTACAGCTAGCAATGTAGACTCAAAATGCAGTTTTATCAGCAACAGAGAGTCTGTTTCATATAAAAGTGGCATTACTCAGGAGAACACTGAAATTTGTGGGGTGGTTACAGGTAATGGGTCTACTTGTAGAAGGCCTCCAGTTCCAGGAAATAAGAGGTGTGCTGTACACAAAGGGATGAGGAATACTGGATCGACTACAGCTAGCAATGTAGACTCAAATTGCAGTTTTATCAGCAACAGAGAGTTTGCTTCATATAACAGTGGCATTACTTGGGAGAACACTGGAGCTTGTGGGGCAACTACAAATAATGGGTCTGCTTGTAGAAGGCCTCCAGTTCAAGGAAGAAAGAGGTGTGCTGTACACAAAGGGAGGAGGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004748 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005971 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009117 GO:0009259 GO:0009987 GO:0016491 GO:0016725 GO:0016728 GO:0019637 GO:0019693 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0044281 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046483 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0051726 GO:0055086 GO:0055114 GO:0061731 GO:0065007 GO:0071704 GO:0090304 GO:1901135 GO:1901360 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko00983 ko01100 ko04115 map00230 map00240 map00480 map00983 map01100 map04115

Pfam Domains

Protein Families

Ribonuc_red_sm

Protein Analysis

569

Amino Acids

61.84

Weight (kDa)

9.49

Isoelectric Point (pI)

43.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GIY_YIG_domain	PF19239	42 - 197	1.1e-62	GIY-YIG domain-containing protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35900 AT4G35900
fragaria_vesca	FvH4_1g11270 FvH4_1g11270 FvH4_2g38080 FvH4_2g38080
malus_domestica	MD02G1125100.v1.1 MD15G1008300.v1.1 MD15G1240800.v1.1
prunus_persica	Prupe.1G361100_v2.0.a1 Prupe.7G173300_v2.0.a1
pyrus_communis	pycom02g09770 pycom08g00780 pycom15g00670 pycom15g21240
rosa_chinensis	RchiOBHm_Chr2g0098731 RchiOBHm_Chr5g0020811 RchiOBHm_Chr5g0069801 RchiOBHm_Chr6g0303481
rosa_laevigata	RLG00000001084 RLG00000001969 RLG00000004672 RLG00000011081 RLG00000015050 RLG00000015656 RLG00000016824 RLG00000024869 RLG00000030190 RLG00000033969 RLG00000035356
rosa_multiflora	Rmu_sc0002776.1_g000024 Rmu_ssc0000114.1_g000047
rosa_roxburghii	Rroxscaffold_2G00107580 Rroxscaffold_2G00143780 Rroxscaffold_7G00164710 Rroxscaffold_7G00172730
rosa_rugosa	Rorug02G0074200 Rorug06G0321600 Rorug06G0321700
rosa_samantha	Rh1AG062500 Rh1BG080000 Rh1DG103800 Rh2AG122100 Rh2BG125600 Rh2CG116700 Rh2CG126700 Rh2CG345200 Rh2DG127700 Rh3DG072100 Rh5CG499500 Rh6AG436100 Rh6BG117000 Rh6BG117100 Rh6BG117200 Rh6BG467400 Rh6CG115500 Rh6CG115600 Rh6CG198000 Rh6CG448100 Rh6DG104000 Rh6DG434700 Rh7AG017700 Rh7AG193200 Rh7AG263200 Rh7BG017300 Rh7BG449800 Rh7DG018000 Rh7DG269900
rosa_wichuraiana	Rw0G004200 Rw5G015480 Rw6G037740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1037
Acc36I	ACCTGC	2 cut(s)	222, 1037
AccB1I	GGYRCC	2 cut(s)	573, 877
AccI	GTMKAC	6 cut(s)	1058, 1149, 1253, 1344, 1448, 1539
AciI	CCGC	5 cut(s)	5, 176, 263, 293, 503
AclI	AACGTT	1 cut(s)	80
AclWI	GGATC	4 cut(s)	303, 1135, 1330, 1525
AcoI	YGGCCR	2 cut(s)	45, 358
AcsI	RAATTY	4 cut(s)	606, 1029, 1224, 1419
AcuI	CTGAAG	2 cut(s)	332, 575
AcyI	GRCGYC	1 cut(s)	574
AfaI	GTAC	3 cut(s)	200, 1494, 1689
AfeI	AGCGCT	1 cut(s)	104
AfiI	CCNNNNNNNGG	8 cut(s)	269, 367, 887, 1068, 1082, 1277, 1472, 1667
AgsI	TTSAA	8 cut(s)	85, 209, 562, 708, 772, 887, 1082, 1667
AjnI	CCWGG	5 cut(s)	151, 217, 232, 424, 1471
AjuI	GAANNNNNNNTTGG	2 cut(s)	802, 834
AloI	GAACNNNNNNTCC	2 cut(s)	243, 275
AluBI	AGCT	8 cut(s)	191, 326, 523, 944, 1139, 1334, 1529, 1616
AluI	AGCT	8 cut(s)	191, 326, 523, 944, 1139, 1334, 1529, 1616
Alw21I	GWGCWC	1 cut(s)	571
Alw44I	GTGCAC	1 cut(s)	567
AlwI	GGATC	4 cut(s)	303, 1135, 1330, 1525
Ama87I	CYCGRG	1 cut(s)	643
Aor51HI	AGCGCT	1 cut(s)	104
ApaLI	GTGCAC	1 cut(s)	567
ApeKI	GCWGC	2 cut(s)	523, 1043
ApoI	RAATTY	4 cut(s)	606, 1029, 1224, 1419
ArsI	GACNNNNNNTTYG	2 cut(s)	1625, 1657
AspA2I	CCTAGG	1 cut(s)	791
AspLEI	GCGC	3 cut(s)	105, 151, 576
AspS9I	GGNCC	3 cut(s)	116, 422, 861
AsuC2I	CCSGG	1 cut(s)	308
AsuHPI	GGTGA	4 cut(s)	49, 167, 866, 1061
AsuNHI	GCTAGC	4 cut(s)	944, 1139, 1334, 1529
AvaI	CYCGRG	1 cut(s)	643
AvaII	GGWCC	1 cut(s)	861
AvrII	CCTAGG	1 cut(s)	791
BaeGI	GKGCMC	1 cut(s)	571
BalI	TGGCCA	1 cut(s)	47
BanI	GGYRCC	2 cut(s)	573, 877
BanII	GRGCYC	3 cut(s)	233, 373, 481
BarI	GAAGNNNNNNTAC	2 cut(s)	1189, 1221
BbsI	GAAGAC	1 cut(s)	1093
Bbv12I	GWGCWC	1 cut(s)	571
BbvI	GCAGC	2 cut(s)	510, 1030
BccI	CCATC	4 cut(s)	179, 468, 851, 1046
BceAI	ACGGC	3 cut(s)	130, 264, 587
BciT130I	CCWGG	5 cut(s)	153, 219, 234, 426, 1473
BciVI	GTATCC	1 cut(s)	449
BcnI	CCSGG	1 cut(s)	308
BfaI	CTAG	5 cut(s)	792, 945, 1140, 1335, 1530
BfmI	CTRYAG	4 cut(s)	1044, 1063, 1329, 1524
BfoI	RGCGCY	2 cut(s)	106, 577
BfuAI	ACCTGC	2 cut(s)	222, 1037
BfuI	GTATCC	1 cut(s)	449
BisI	GCNGC	3 cut(s)	5, 524, 1044
BlnI	CCTAGG	1 cut(s)	791
BlsI	GCNGC	3 cut(s)	6, 525, 1045
Bme1390I	CCNGG	6 cut(s)	153, 219, 234, 308, 426, 1473
Bme18I	GGWCC	1 cut(s)	861
BmeT110I	CYCGRG	1 cut(s)	643
BmgT120I	GGNCC	3 cut(s)	116, 422, 861
BmiI	GGNNCC	7 cut(s)	118, 423, 480, 490, 575, 862, 879
BmrFI	CCNGG	6 cut(s)	153, 219, 234, 308, 426, 1473
BmsI	GCATC	1 cut(s)	432
BmtI	GCTAGC	4 cut(s)	948, 1143, 1338, 1533
BpiI	GAAGAC	1 cut(s)	1093
BpmI	CTGGAG	6 cut(s)	676, 1059, 1254, 1449, 1632, 1644
Bpu10I	CCTNAGC	1 cut(s)	391
BpuEI	CTTGAG	1 cut(s)	584
BpuMI	CCSGG	1 cut(s)	308
Bsa29I	ATCGAT	1 cut(s)	1130
BsaHI	GRCGYC	1 cut(s)	574
BsaJI	CCNNGG	4 cut(s)	232, 280, 644, 791
BsaXI	ACNNNNNCTCC	2 cut(s)	243, 273
Bsc4I	CCNNNNNNNGG	8 cut(s)	269, 367, 887, 1068, 1082, 1277, 1472, 1667
Bse3DI	GCAATG	4 cut(s)	955, 1150, 1345, 1540
BseBI	CCWGG	5 cut(s)	153, 219, 234, 426, 1473
BseCI	ATCGAT	1 cut(s)	1130
BseDI	CCNNGG	4 cut(s)	232, 280, 644, 791
BseGI	GGATG	4 cut(s)	190, 1119, 1314, 1509
BseLI	CCNNNNNNNGG	8 cut(s)	269, 367, 887, 1068, 1082, 1277, 1472, 1667
BseMI	GCAATG	4 cut(s)	955, 1150, 1345, 1540
BseMII	CTCAG	4 cut(s)	405, 1028, 1223, 1418
BseRI	GAGGAG	1 cut(s)	452
BseSI	GKGCMC	1 cut(s)	571
BseXI	GCAGC	2 cut(s)	510, 1030
BshNI	GGYRCC	2 cut(s)	573, 877
BshVI	ATCGAT	1 cut(s)	1130
BsiHKAI	GWGCWC	1 cut(s)	571
BsiHKCI	CYCGRG	1 cut(s)	643
BsiSI	CCGG	2 cut(s)	308, 361
BslFI	GGGAC	3 cut(s)	290, 626, 931
BslI	CCNNNNNNNGG	8 cut(s)	269, 367, 887, 1068, 1082, 1277, 1472, 1667
BsmFI	GGGAC	3 cut(s)	290, 626, 931
BsoBI	CYCGRG	1 cut(s)	643
Bsp1286I	GDGCHC	4 cut(s)	233, 373, 481, 571
Bsp1407I	TGTACA	2 cut(s)	1492, 1687
Bsp143I	GATC	5 cut(s)	295, 782, 1127, 1322, 1517
BspACI	CCGC	5 cut(s)	5, 176, 263, 293, 503
BspCNI	CTCAG	4 cut(s)	404, 1027, 1222, 1417
BspDI	ATCGAT	1 cut(s)	1130
BspLI	GGNNCC	7 cut(s)	118, 423, 480, 490, 575, 862, 879
BspMAI	CTGCAG	1 cut(s)	1048
BspMI	ACCTGC	2 cut(s)	222, 1037
BspOI	GCTAGC	4 cut(s)	948, 1143, 1338, 1533
BspPI	GGATC	4 cut(s)	303, 1135, 1330, 1525
BspT107I	GGYRCC	2 cut(s)	573, 877
BsrDI	GCAATG	4 cut(s)	955, 1150, 1345, 1540
BsrGI	TGTACA	2 cut(s)	1492, 1687
BssECI	CCNNGG	4 cut(s)	232, 280, 644, 791
BssMI	GATC	5 cut(s)	295, 782, 1127, 1322, 1517
BssNI	GRCGYC	1 cut(s)	574
BssT1I	CCWWGG	1 cut(s)	791
Bst2UI	CCWGG	5 cut(s)	153, 219, 234, 426, 1473
Bst4CI	ACNGT	2 cut(s)	269, 1589
Bst6I	CTCTTC	1 cut(s)	80
BstACI	GRCGYC	1 cut(s)	574
BstAUI	TGTACA	2 cut(s)	1492, 1687
BstC8I	GCNNGC	7 cut(s)	49, 101, 178, 946, 1141, 1336, 1531
BstDEI	CTNAG	4 cut(s)	391, 1014, 1209, 1404
BstDSI	CCRYGG	1 cut(s)	280
BstENI	CCTNNNNNAGG	1 cut(s)	1066
BstF5I	GGATG	4 cut(s)	190, 1119, 1314, 1509
BstH2I	RGCGCY	2 cut(s)	106, 577
BstHHI	GCGC	3 cut(s)	105, 151, 576
BstKTI	GATC	5 cut(s)	298, 785, 1130, 1325, 1520
BstMBI	GATC	5 cut(s)	295, 782, 1127, 1322, 1517
BstMWI	GCNNNNNNNGC	4 cut(s)	109, 332, 950, 1622
BstNI	CCWGG	5 cut(s)	153, 219, 234, 426, 1473
BstSCI	CCNGG	6 cut(s)	151, 217, 232, 306, 424, 1471
BstSFI	CTRYAG	4 cut(s)	1044, 1063, 1329, 1524
BstSLI	GKGCMC	1 cut(s)	571
BstV1I	GCAGC	2 cut(s)	510, 1030
BstV2I	GAAGAC	1 cut(s)	1093
BstXI	CCANNNNNNTGG	1 cut(s)	700
Bsu15I	ATCGAT	1 cut(s)	1130
BsuI	GTATCC	1 cut(s)	449
BsuTUI	ATCGAT	1 cut(s)	1130
BtgI	CCRYGG	1 cut(s)	280
BtsCI	GGATG	4 cut(s)	190, 1119, 1314, 1509
BtsIMutI	CAGTG	6 cut(s)	274, 1023, 1218, 1413, 1594, 1608
BveI	ACCTGC	2 cut(s)	222, 1037
Cac8I	GCNNGC	7 cut(s)	49, 101, 178, 946, 1141, 1336, 1531
CfoI	GCGC	3 cut(s)	105, 151, 576
Cfr13I	GGNCC	3 cut(s)	116, 422, 861
ClaI	ATCGAT	1 cut(s)	1130
Csp6I	GTAC	3 cut(s)	199, 1493, 1688
CviAII	CATG	2 cut(s)	387, 530
CviQI	GTAC	3 cut(s)	199, 1493, 1688
DdeI	CTNAG	4 cut(s)	391, 1014, 1209, 1404
DinI	GGCGCC	1 cut(s)	575
DpnI	GATC	5 cut(s)	297, 784, 1129, 1324, 1519
DpnII	GATC	5 cut(s)	295, 782, 1127, 1322, 1517
EaeI	YGGCCR	2 cut(s)	45, 358
Eam1104I	CTCTTC	1 cut(s)	80
EarI	CTCTTC	1 cut(s)	80
EciI	GGCGGA	1 cut(s)	518
Eco130I	CCWWGG	1 cut(s)	791
Eco147I	AGGCCT	5 cut(s)	649, 1072, 1267, 1462, 1657
Eco24I	GRGCYC	3 cut(s)	233, 373, 481
Eco47I	GGWCC	1 cut(s)	861
Eco47III	AGCGCT	1 cut(s)	104
Eco57I	CTGAAG	2 cut(s)	332, 575
Eco88I	CYCGRG	1 cut(s)	643
EcoNI	CCTNNNNNAGG	1 cut(s)	1066
EcoO109I	RGGNCCY	1 cut(s)	422
EcoRII	CCWGG	5 cut(s)	151, 217, 232, 424, 1471
EcoT14I	CCWWGG	1 cut(s)	791
EcoT38I	GRGCYC	3 cut(s)	233, 373, 481
EgeI	GGCGCC	1 cut(s)	575
EheI	GGCGCC	1 cut(s)	575
ErhI	CCWWGG	1 cut(s)	791
FaeI	CATG	2 cut(s)	390, 533
FalI	AAGNNNNNCTT	2 cut(s)	802, 834
FaqI	GGGAC	3 cut(s)	290, 626, 931
FatI	CATG	2 cut(s)	386, 529
FauI	CCCGC	1 cut(s)	169
FauNDI	CATATG	1 cut(s)	866
FblI	GTMKAC	6 cut(s)	1058, 1149, 1253, 1344, 1448, 1539
Fnu4HI	GCNGC	3 cut(s)	5, 524, 1044
FokI	GGATG	4 cut(s)	197, 1126, 1321, 1516
FriOI	GRGCYC	3 cut(s)	233, 373, 481
Fsp4HI	GCNGC	3 cut(s)	5, 524, 1044
FspBI	CTAG	5 cut(s)	792, 945, 1140, 1335, 1530
GlaI	GCGC	3 cut(s)	104, 150, 575
GluI	GCNGC	3 cut(s)	5, 524, 1044
GsuI	CTGGAG	6 cut(s)	676, 1059, 1254, 1449, 1632, 1644
HaeII	RGCGCY	2 cut(s)	106, 577
HapII	CCGG	2 cut(s)	308, 361
HhaI	GCGC	3 cut(s)	105, 151, 576
Hin1I	GRCGYC	1 cut(s)	574
Hin1II	CATG	2 cut(s)	390, 533
Hin6I	GCGC	3 cut(s)	103, 149, 574
HinP1I	GCGC	3 cut(s)	103, 149, 574
HincII	GTYRAC	1 cut(s)	1150
HindII	GTYRAC	1 cut(s)	1150
HinfI	GANTC	7 cut(s)	397, 956, 1151, 1181, 1346, 1376, 1541
HpaII	CCGG	2 cut(s)	308, 361
HphI	GGTGA	4 cut(s)	49, 167, 866, 1061
Hpy166II	GTNNAC	9 cut(s)	569, 1059, 1150, 1254, 1345, 1449, 1495, 1540, 1690
Hpy188I	TCNGA	3 cut(s)	251, 402, 594
Hpy188III	TCNNGA	6 cut(s)	601, 643, 660, 1016, 1211, 1406
Hpy8I	GTNNAC	9 cut(s)	569, 1059, 1150, 1254, 1345, 1449, 1495, 1540, 1690
HpyAV	CCTTC	7 cut(s)	130, 599, 666, 1062, 1257, 1452, 1647
HpyCH4III	ACNGT	2 cut(s)	269, 1589
HpyCH4IV	ACGT	1 cut(s)	80
HpyCH4V	TGCA	8 cut(s)	533, 569, 966, 1046, 1161, 1277, 1356, 1551
HpyF10VI	GCNNNNNNNGC	4 cut(s)	109, 332, 950, 1622
HpyF3I	CTNAG	4 cut(s)	391, 1014, 1209, 1404
HpySE526I	ACGT	1 cut(s)	80
Hsp92I	GRCGYC	1 cut(s)	574
Hsp92II	CATG	2 cut(s)	390, 533
HspAI	GCGC	3 cut(s)	103, 149, 574
KasI	GGCGCC	1 cut(s)	573
Kzo9I	GATC	5 cut(s)	295, 782, 1127, 1322, 1517
LmnI	GCTCC	3 cut(s)	188, 484, 1613
Lsp1109I	GCAGC	2 cut(s)	510, 1030
LweI	GCATC	1 cut(s)	432
MaeI	CTAG	5 cut(s)	792, 945, 1140, 1335, 1530
MaeII	ACGT	1 cut(s)	80
MaeIII	GTNAC	3 cut(s)	725, 1237, 1432
MalI	GATC	5 cut(s)	297, 784, 1129, 1324, 1519
MboI	GATC	5 cut(s)	295, 782, 1127, 1322, 1517
MboII	GAAGA	7 cut(s)	35, 41, 97, 104, 903, 1098, 1683
MhlI	GDGCHC	4 cut(s)	233, 373, 481, 571
MlsI	TGGCCA	1 cut(s)	47
MluCI	AATT	8 cut(s)	538, 606, 684, 834, 1029, 1224, 1419, 1546
MluNI	TGGCCA	1 cut(s)	47
Mly113I	GGCGCC	1 cut(s)	574
MlyI	GAGTC	6 cut(s)	950, 1145, 1190, 1340, 1385, 1535
MmeI	TCCRAC	2 cut(s)	101, 298
Mox20I	TGGCCA	1 cut(s)	47
MscI	TGGCCA	1 cut(s)	47
MseI	TTAA	4 cut(s)	288, 537, 687, 1708
Msp20I	TGGCCA	1 cut(s)	47
MspA1I	CMGCKG	2 cut(s)	176, 523
MspI	CCGG	2 cut(s)	308, 361
MspR9I	CCNGG	6 cut(s)	153, 219, 234, 308, 426, 1473
MvaI	CCWGG	5 cut(s)	153, 219, 234, 426, 1473
MwoI	GCNNNNNNNGC	4 cut(s)	109, 332, 950, 1622
NarI	GGCGCC	1 cut(s)	574
NciI	CCSGG	1 cut(s)	308
NdeI	CATATG	1 cut(s)	866
NdeII	GATC	5 cut(s)	295, 782, 1127, 1322, 1517
NheI	GCTAGC	4 cut(s)	944, 1139, 1334, 1529
NlaIII	CATG	2 cut(s)	390, 533
NlaIV	GGNNCC	7 cut(s)	118, 423, 480, 490, 575, 862, 879
PaqCI	CACCTGC	1 cut(s)	1037
PceI	AGGCCT	5 cut(s)	649, 1072, 1267, 1462, 1657
PfeI	GAWTC	1 cut(s)	397
PfoI	TCCNGGA	1 cut(s)	1471
PkrI	GCNGC	3 cut(s)	6, 525, 1045
PleI	GAGTC	6 cut(s)	950, 1145, 1189, 1340, 1384, 1535
PluTI	GGCGCC	1 cut(s)	577
PpsI	GAGTC	6 cut(s)	950, 1145, 1189, 1340, 1384, 1535
Psp1406I	AACGTT	1 cut(s)	80
Psp6I	CCWGG	5 cut(s)	151, 217, 232, 424, 1471
PspGI	CCWGG	5 cut(s)	151, 217, 232, 424, 1471
PspN4I	GGNNCC	7 cut(s)	118, 423, 480, 490, 575, 862, 879
PspPI	GGNCC	3 cut(s)	116, 422, 861
PstI	CTGCAG	1 cut(s)	1048
PvuII	CAGCTG	1 cut(s)	523
RsaI	GTAC	3 cut(s)	200, 1494, 1689
RsaNI	GTAC	3 cut(s)	199, 1493, 1688
SalI	GTCGAC	1 cut(s)	1148
SaqAI	TTAA	4 cut(s)	288, 537, 687, 1708
SatI	GCNGC	3 cut(s)	5, 524, 1044
Sau3AI	GATC	5 cut(s)	295, 782, 1127, 1322, 1517
Sau96I	GGNCC	3 cut(s)	116, 422, 861
SchI	GAGTC	6 cut(s)	950, 1145, 1190, 1340, 1385, 1535
ScrFI	CCNGG	6 cut(s)	153, 219, 234, 308, 426, 1473
SduI	GDGCHC	4 cut(s)	233, 373, 481, 571
SfaNI	GCATC	1 cut(s)	432
SfcI	CTRYAG	4 cut(s)	1044, 1063, 1329, 1524
SfoI	GGCGCC	1 cut(s)	575
SinI	GGWCC	1 cut(s)	861
SmlI	CTYRAG	1 cut(s)	599
SmoI	CTYRAG	1 cut(s)	599
Sse9I	AATT	8 cut(s)	538, 606, 684, 834, 1029, 1224, 1419, 1546
SseBI	AGGCCT	5 cut(s)	649, 1072, 1267, 1462, 1657
SsiI	CCGC	5 cut(s)	5, 176, 263, 293, 503
SspDI	GGCGCC	1 cut(s)	573
SspMI	CTAG	5 cut(s)	792, 945, 1140, 1335, 1530
StuI	AGGCCT	5 cut(s)	649, 1072, 1267, 1462, 1657
StyD4I	CCNGG	6 cut(s)	151, 217, 232, 306, 424, 1471
StyI	CCWWGG	1 cut(s)	791
TaaI	ACNGT	2 cut(s)	269, 1589
TaiI	ACGT	1 cut(s)	83
TaqI	TCGA	6 cut(s)	15, 21, 1130, 1149, 1325, 1520
TasI	AATT	8 cut(s)	538, 606, 684, 834, 1029, 1224, 1419, 1546
TatI	WGTACW	2 cut(s)	1492, 1687
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	1 cut(s)	397
Tru1I	TTAA	4 cut(s)	288, 537, 687, 1708
Tru9I	TTAA	4 cut(s)	288, 537, 687, 1708
TscAI	CASTG	6 cut(s)	274, 1030, 1225, 1420, 1594, 1615
TseI	GCWGC	2 cut(s)	523, 1043
TspDTI	ATGAA	7 cut(s)	42, 258, 518, 984, 1179, 1374, 1569
TspGWI	ACGGA	2 cut(s)	465, 822
TspRI	CASTG	6 cut(s)	274, 1030, 1225, 1420, 1594, 1615
VneI	GTGCAC	1 cut(s)	567
VpaK11BI	GGWCC	1 cut(s)	861
XagI	CCTNNNNNAGG	1 cut(s)	1066
XapI	RAATTY	4 cut(s)	606, 1029, 1224, 1419
XmaJI	CCTAGG	1 cut(s)	791
XmiI	GTMKAC	6 cut(s)	1058, 1149, 1253, 1344, 1448, 1539
XspI	CTAG	5 cut(s)	792, 945, 1140, 1335, 1530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.