Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000739

Physical Location & Seq

Genomic Coordinates Reverse (-)

10199727 .. 10200496

Gene Structure 770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001084

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGTCACCGCGGGAATCTTTCTTTTAGTGGTAGTGGAGGATGGATCAGATGAGGTTGTTATAAGTGATGATGTTGTCGACGGCTGTGAGGCGTCAGCAAAAATTTTGCATGCTAGCGGCATACGTATGACCGGAAAGGCTGGATTTTCCCTCCTTTCTGATCGGTTTTCAGGTGATGGGTTTCATCCTCATCGTGGCTCTAACTTTTTTGCTTTTGGCCTCCTTTTATTGATCGGAGGTATTTTTGCTCTACGGCTGAGGGCAGATCTTGATGGTGGCTCTTCTCTGGTAACGGCTGCGATGAAGGCAAGCCATGGATTTTGTGGACTCGAGTCTATCAGCAATGGAGATCCAGTGACAAAATGCGGTGGTCCACTGGTTATGATTTTGGAATCCGGATTGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

13.95

Weight (kDa)

4.95

Isoelectric Point (pI)

13.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35900 AT4G35900
fragaria_vesca	FvH4_1g11270 FvH4_1g11270 FvH4_2g38080 FvH4_2g38080
malus_domestica	MD02G1125100.v1.1 MD15G1008300.v1.1 MD15G1240800.v1.1
prunus_persica	Prupe.1G361100_v2.0.a1 Prupe.7G173300_v2.0.a1
pyrus_communis	pycom02g09770 pycom08g00780 pycom15g00670 pycom15g21240
rosa_chinensis	RchiOBHm_Chr2g0098731 RchiOBHm_Chr5g0020811 RchiOBHm_Chr5g0069801 RchiOBHm_Chr6g0303481
rosa_laevigata	RLG00000001084 RLG00000001969 RLG00000004672 RLG00000011081 RLG00000015050 RLG00000015656 RLG00000016824 RLG00000024869 RLG00000030190 RLG00000033969 RLG00000035356
rosa_multiflora	Rmu_sc0002776.1_g000024 Rmu_ssc0000114.1_g000047
rosa_roxburghii	Rroxscaffold_2G00107580 Rroxscaffold_2G00143780 Rroxscaffold_7G00164710 Rroxscaffold_7G00172730
rosa_rugosa	Rorug02G0074200 Rorug06G0321600 Rorug06G0321700
rosa_samantha	Rh1AG062500 Rh1BG080000 Rh1DG103800 Rh2AG122100 Rh2BG125600 Rh2CG116700 Rh2CG126700 Rh2CG345200 Rh2DG127700 Rh3DG072100 Rh5CG499500 Rh6AG436100 Rh6BG117000 Rh6BG117100 Rh6BG117200 Rh6BG467400 Rh6CG115500 Rh6CG115600 Rh6CG198000 Rh6CG448100 Rh6DG104000 Rh6DG434700 Rh7AG017700 Rh7AG193200 Rh7AG263200 Rh7BG017300 Rh7BG449800 Rh7DG018000 Rh7DG269900
rosa_wichuraiana	Rw0G004200 Rw5G015480 Rw6G037740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	62
AccI	GTMKAC	1 cut(s)	78
AccII	CGCG	1 cut(s)	11
AccIII	TCCGGA	1 cut(s)	395
AciI	CCGC	4 cut(s)	9, 11, 117, 366
AclWI	GGATC	2 cut(s)	52, 344
AcsI	RAATTY	1 cut(s)	102
AcyI	GRCGYC	1 cut(s)	92
AfiI	CCNNNNNNNGG	1 cut(s)	194
AlwI	GGATC	2 cut(s)	52, 344
Ama87I	CYCGRG	1 cut(s)	329
Aor13HI	TCCGGA	1 cut(s)	395
AoxI	GGCC	1 cut(s)	217
ApeKI	GCWGC	1 cut(s)	296
ApoI	RAATTY	1 cut(s)	102
AspS9I	GGNCC	1 cut(s)	371
AsuHPI	GGTGA	1 cut(s)	185
AsuNHI	GCTAGC	1 cut(s)	113
AvaI	CYCGRG	1 cut(s)	329
AvaII	GGWCC	1 cut(s)	371
BbvCI	CCTCAGC	1 cut(s)	257
BbvI	GCAGC	1 cut(s)	283
BccI	CCATC	3 cut(s)	35, 170, 266
BceAI	ACGGC	3 cut(s)	97, 269, 309
BfaI	CTAG	1 cut(s)	114
BglII	AGATCT	1 cut(s)	265
BisI	GCNGC	2 cut(s)	118, 297
BlsI	GCNGC	2 cut(s)	119, 298
Bme18I	GGWCC	1 cut(s)	371
BmeT110I	CYCGRG	1 cut(s)	329
BmgT120I	GGNCC	1 cut(s)	371
BmtI	GCTAGC	1 cut(s)	117
BoxI	GACNNNNGTC	1 cut(s)	331
Bpu10I	CCTNAGC	1 cut(s)	257
BsaAI	YACGTR	1 cut(s)	125
BsaHI	GRCGYC	1 cut(s)	92
BsaJI	CCNNGG	2 cut(s)	9, 313
BsaWI	WCCGGW	2 cut(s)	131, 395
BsaXI	ACNNNNNCTCC	2 cut(s)	339, 369
Bsc4I	CCNNNNNNNGG	1 cut(s)	194
Bse1I	ACTGG	2 cut(s)	353, 381
Bse3DI	GCAATG	1 cut(s)	349
BseAI	TCCGGA	1 cut(s)	395
BseDI	CCNNGG	2 cut(s)	9, 313
BseGI	GGATG	2 cut(s)	46, 184
BseLI	CCNNNNNNNGG	1 cut(s)	194
BseMI	GCAATG	1 cut(s)	349
BseMII	CTCAG	1 cut(s)	248
BseNI	ACTGG	2 cut(s)	353, 381
BseXI	GCAGC	1 cut(s)	283
Bsh1236I	CGCG	1 cut(s)	11
BshFI	GGCC	1 cut(s)	219
BsiHKCI	CYCGRG	1 cut(s)	329
BsiSI	CCGG	2 cut(s)	132, 396
BslI	CCNNNNNNNGG	1 cut(s)	194
BsnI	GGCC	1 cut(s)	219
BsoBI	CYCGRG	1 cut(s)	329
Bsp13I	TCCGGA	1 cut(s)	395
Bsp143I	GATC	5 cut(s)	44, 160, 231, 265, 349
Bsp19I	CCATGG	1 cut(s)	313
BspACI	CCGC	4 cut(s)	9, 11, 117, 366
BspANI	GGCC	1 cut(s)	219
BspCNI	CTCAG	1 cut(s)	249
BspEI	TCCGGA	1 cut(s)	395
BspFNI	CGCG	1 cut(s)	11
BspOI	GCTAGC	1 cut(s)	117
BspPI	GGATC	2 cut(s)	52, 344
BspQI	GCTCTTC	1 cut(s)	286
BsrDI	GCAATG	1 cut(s)	349
BsrI	ACTGG	2 cut(s)	353, 381
BssECI	CCNNGG	2 cut(s)	9, 313
BssMI	GATC	5 cut(s)	44, 160, 231, 265, 349
BssNI	GRCGYC	1 cut(s)	92
BssT1I	CCWWGG	1 cut(s)	313
Bst6I	CTCTTC	1 cut(s)	286
BstACI	GRCGYC	1 cut(s)	92
BstBAI	YACGTR	1 cut(s)	125
BstC8I	GCNNGC	3 cut(s)	111, 115, 310
BstDEI	CTNAG	1 cut(s)	257
BstDSI	CCRYGG	2 cut(s)	9, 313
BstEII	GGTNACC	1 cut(s)	4
BstF5I	GGATG	2 cut(s)	46, 184
BstFNI	CGCG	1 cut(s)	11
BstKTI	GATC	5 cut(s)	47, 163, 234, 268, 352
BstMBI	GATC	5 cut(s)	44, 160, 231, 265, 349
BstMWI	GCNNNNNNNGC	1 cut(s)	305
BstNSI	RCATGY	1 cut(s)	113
BstPAI	GACNNNNGTC	1 cut(s)	331
BstPI	GGTNACC	1 cut(s)	4
BstSNI	TACGTA	1 cut(s)	125
BstUI	CGCG	1 cut(s)	11
BstV1I	GCAGC	1 cut(s)	283
BstX2I	RGATCY	2 cut(s)	265, 349
BstYI	RGATCY	2 cut(s)	265, 349
BsuRI	GGCC	1 cut(s)	219
BtgI	CCRYGG	2 cut(s)	9, 313
BtgZI	GCGATG	1 cut(s)	314
BtsCI	GGATG	2 cut(s)	46, 184
BtsIMutI	CAGTG	2 cut(s)	360, 374
Cac8I	GCNNGC	3 cut(s)	111, 115, 310
Cfr13I	GGNCC	1 cut(s)	371
Cfr42I	CCGCGG	1 cut(s)	12
CseI	GACGC	1 cut(s)	81
CviAII	CATG	2 cut(s)	110, 314
CviJI	RGCY	8 cut(s)	84, 140, 198, 219, 256, 279, 296, 312
CviKI_1	RGCY	8 cut(s)	84, 140, 198, 219, 256, 279, 296, 312
DdeI	CTNAG	1 cut(s)	257
DpnI	GATC	5 cut(s)	46, 162, 233, 267, 351
DpnII	GATC	5 cut(s)	44, 160, 231, 265, 349
Eam1104I	CTCTTC	1 cut(s)	286
EarI	CTCTTC	1 cut(s)	286
Eco105I	TACGTA	1 cut(s)	125
Eco130I	CCWWGG	1 cut(s)	313
Eco47I	GGWCC	1 cut(s)	371
Eco88I	CYCGRG	1 cut(s)	329
Eco91I	GGTNACC	1 cut(s)	4
EcoO65I	GGTNACC	1 cut(s)	4
EcoT14I	CCWWGG	1 cut(s)	313
ErhI	CCWWGG	1 cut(s)	313
FaeI	CATG	2 cut(s)	113, 317
FaiI	YATR	6 cut(s)	62, 111, 122, 128, 315, 383
FatI	CATG	2 cut(s)	109, 313
FauI	CCCGC	1 cut(s)	4
FblI	GTMKAC	1 cut(s)	78
Fnu4HI	GCNGC	2 cut(s)	118, 297
FokI	GGATG	2 cut(s)	53, 171
Fsp4HI	GCNGC	2 cut(s)	118, 297
FspBI	CTAG	1 cut(s)	114
GluI	GCNGC	2 cut(s)	118, 297
HaeIII	GGCC	1 cut(s)	219
HapII	CCGG	2 cut(s)	132, 396
HgaI	GACGC	1 cut(s)	81
Hin1I	GRCGYC	1 cut(s)	92
Hin1II	CATG	2 cut(s)	113, 317
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HinfI	GANTC	4 cut(s)	15, 327, 332, 392
HpaII	CCGG	2 cut(s)	132, 396
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	3 cut(s)	79, 326, 374
Hpy188I	TCNGA	3 cut(s)	49, 160, 236
Hpy188III	TCNNGA	2 cut(s)	269, 396
Hpy8I	GTNNAC	3 cut(s)	79, 326, 374
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	1 cut(s)	298
HpyCH4IV	ACGT	1 cut(s)	124
HpyCH4V	TGCA	1 cut(s)	109
HpyF10VI	GCNNNNNNNGC	1 cut(s)	305
HpyF3I	CTNAG	1 cut(s)	257
HpySE526I	ACGT	1 cut(s)	124
Hsp92I	GRCGYC	1 cut(s)	92
Hsp92II	CATG	2 cut(s)	113, 317
Kpn2I	TCCGGA	1 cut(s)	395
KspI	CCGCGG	1 cut(s)	12
Kzo9I	GATC	5 cut(s)	44, 160, 231, 265, 349
LguI	GCTCTTC	1 cut(s)	286
LpnPI	CCDG	6 cut(s)	126, 145, 156, 272, 362, 366
Lsp1109I	GCAGC	1 cut(s)	283
MaeI	CTAG	1 cut(s)	114
MaeII	ACGT	1 cut(s)	124
MaeIII	GTNAC	3 cut(s)	4, 289, 355
MalI	GATC	5 cut(s)	46, 162, 233, 267, 351
MboI	GATC	5 cut(s)	44, 160, 231, 265, 349
MboII	GAAGA	1 cut(s)	273
MflI	RGATCY	2 cut(s)	265, 349
MluCI	AATT	1 cut(s)	102
MlyI	GAGTC	2 cut(s)	321, 341
MnlI	CCTC	8 cut(s)	31, 46, 82, 161, 198, 230, 230, 252
MroI	TCCGGA	1 cut(s)	395
MseI	TTAA	1 cut(s)	406
MslI	CAYNNNNRTG	1 cut(s)	125
MspA1I	CMGCKG	1 cut(s)	11
MspI	CCGG	2 cut(s)	132, 396
MvnI	CGCG	1 cut(s)	11
MwoI	GCNNNNNNNGC	1 cut(s)	305
NcoI	CCATGG	1 cut(s)	313
NdeII	GATC	5 cut(s)	44, 160, 231, 265, 349
NheI	GCTAGC	1 cut(s)	113
NlaIII	CATG	2 cut(s)	113, 317
NmuCI	GTSAC	2 cut(s)	4, 355
NspI	RCATGY	1 cut(s)	113
PaeI	GCATGC	1 cut(s)	113
PaeR7I	CTCGAG	1 cut(s)	329
PciSI	GCTCTTC	1 cut(s)	286
PfeI	GAWTC	2 cut(s)	15, 392
PkrI	GCNGC	2 cut(s)	119, 298
PleI	GAGTC	2 cut(s)	321, 340
PpsI	GAGTC	2 cut(s)	321, 340
Ppu21I	YACGTR	1 cut(s)	125
PshAI	GACNNNNGTC	1 cut(s)	331
PsiI	TTATAA	1 cut(s)	62
PspEI	GGTNACC	1 cut(s)	4
PspPI	GGNCC	1 cut(s)	371
PspXI	VCTCGAGB	1 cut(s)	329
PsuI	RGATCY	2 cut(s)	265, 349
RseI	CAYNNNNRTG	1 cut(s)	125
SacII	CCGCGG	1 cut(s)	12
SalI	GTCGAC	1 cut(s)	77
SapI	GCTCTTC	1 cut(s)	286
SaqAI	TTAA	1 cut(s)	406
SatI	GCNGC	2 cut(s)	118, 297
Sau3AI	GATC	5 cut(s)	44, 160, 231, 265, 349
Sau96I	GGNCC	1 cut(s)	371
SchI	GAGTC	2 cut(s)	321, 341
SetI	ASST	4 cut(s)	57, 127, 175, 241
Sfr274I	CTCGAG	1 cut(s)	329
Sfr303I	CCGCGG	1 cut(s)	12
SgrBI	CCGCGG	1 cut(s)	12
SinI	GGWCC	1 cut(s)	371
SlaI	CTCGAG	1 cut(s)	329
SmiMI	CAYNNNNRTG	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
SnaBI	TACGTA	1 cut(s)	125
SphI	GCATGC	1 cut(s)	113
Sse9I	AATT	1 cut(s)	102
SsiI	CCGC	4 cut(s)	9, 11, 117, 366
SspMI	CTAG	1 cut(s)	114
StyI	CCWWGG	1 cut(s)	313
TaiI	ACGT	1 cut(s)	127
TaqI	TCGA	2 cut(s)	78, 330
TasI	AATT	1 cut(s)	102
TauI	GCSGC	1 cut(s)	120
TfiI	GAWTC	2 cut(s)	15, 392
Tru1I	TTAA	1 cut(s)	406
Tru9I	TTAA	1 cut(s)	406
TscAI	CASTG	2 cut(s)	360, 381
TseFI	GTSAC	2 cut(s)	4, 355
TseI	GCWGC	1 cut(s)	296
Tsp45I	GTSAC	2 cut(s)	4, 355
TspDTI	ATGAA	2 cut(s)	173, 317
TspRI	CASTG	2 cut(s)	360, 381
VpaK11BI	GGWCC	1 cut(s)	371
XapI	RAATTY	1 cut(s)	102
XceI	RCATGY	1 cut(s)	113
XcmI	CCANNNNNNNNNTGG	1 cut(s)	320
XhoI	CTCGAG	1 cut(s)	329
XmiI	GTMKAC	1 cut(s)	78
XspI	CTAG	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.