Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000739

Physical Location & Seq

Genomic Coordinates Forward (+)

19431413 .. 19434967

Gene Structure 3555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG103800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGTGGCGGCGAAGTCGGTGCGACATGGTTTCAAGTCTGGCAGCGTTGTGGCGTTTCCTGGGTGGCTCGTTGATGGTGGAAGGGATGAGAGCGAGCCTTTGGACTGTTTTATGTTTCTACCCACATCGTTCGAACCAGGTGGATTGGATCTGGTTTTGGTAGTGTTTGTCGTTGCTGTCCGGGTGGTAGAGGATGGTGGAGATGTGGTGGCTGTGATGGTCGTAGCAGCGCCGGCGGTCTTGATGCTGTCGGTGGAGGTTCTGTGCAGGCTAGGGTTTCCCAGGGATCAGGAGGATGTTGTTGGAGTTGCGGTTGCTGGAAAGGCTGGATCAAAATCACTAGCGGTGGTGGTGACAAGACTCAACCCGAATTTCACCCTGAAATCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

129

Amino Acids

13.49

Weight (kDa)

5.01

Isoelectric Point (pI)

26.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35900 AT4G35900
fragaria_vesca	FvH4_1g11270 FvH4_1g11270 FvH4_2g38080 FvH4_2g38080
malus_domestica	MD02G1125100.v1.1 MD15G1008300.v1.1 MD15G1240800.v1.1
prunus_persica	Prupe.1G361100_v2.0.a1 Prupe.7G173300_v2.0.a1
pyrus_communis	pycom02g09770 pycom08g00780 pycom15g00670 pycom15g21240
rosa_chinensis	RchiOBHm_Chr2g0098731 RchiOBHm_Chr5g0020811 RchiOBHm_Chr5g0069801 RchiOBHm_Chr6g0303481
rosa_laevigata	RLG00000001084 RLG00000001969 RLG00000004672 RLG00000011081 RLG00000015050 RLG00000015656 RLG00000016824 RLG00000024869 RLG00000030190 RLG00000033969 RLG00000035356
rosa_multiflora	Rmu_sc0002776.1_g000024 Rmu_ssc0000114.1_g000047
rosa_roxburghii	Rroxscaffold_2G00107580 Rroxscaffold_2G00143780 Rroxscaffold_7G00164710 Rroxscaffold_7G00172730
rosa_rugosa	Rorug02G0074200 Rorug06G0321600 Rorug06G0321700
rosa_samantha	Rh1AG062500 Rh1BG080000 Rh1DG103800 Rh2AG122100 Rh2BG125600 Rh2CG116700 Rh2CG126700 Rh2CG345200 Rh2DG127700 Rh3DG072100 Rh5CG499500 Rh6AG436100 Rh6BG117000 Rh6BG117100 Rh6BG117200 Rh6BG467400 Rh6CG115500 Rh6CG115600 Rh6CG198000 Rh6CG448100 Rh6DG104000 Rh6DG434700 Rh7AG017700 Rh7AG193200 Rh7AG263200 Rh7BG017300 Rh7BG449800 Rh7DG018000 Rh7DG269900
rosa_wichuraiana	Rw0G004200 Rw5G015480 Rw6G037740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	8, 236, 311, 344
AclWI	GGATC	3 cut(s)	156, 294, 337
AcsI	RAATTY	1 cut(s)	370
AgsI	TTSAA	1 cut(s)	34
AjnI	CCWGG	3 cut(s)	58, 136, 281
AlwI	GGATC	3 cut(s)	156, 294, 337
ApeKI	GCWGC	2 cut(s)	42, 227
ApoI	RAATTY	1 cut(s)	370
AspLEI	GCGC	1 cut(s)	232
AsuC2I	CCSGG	1 cut(s)	182
AsuHPI	GGTGA	2 cut(s)	364, 367
AsuII	TTCGAA	1 cut(s)	132
BbvI	GCAGC	2 cut(s)	54, 239
BccI	CCATC	3 cut(s)	68, 188, 211
BcgI	CGANNNNNNTGC	1 cut(s)	35
BciT130I	CCWGG	3 cut(s)	60, 138, 283
BcnI	CCSGG	1 cut(s)	182
BfaI	CTAG	3 cut(s)	272, 341, 388
BfoI	RGCGCY	1 cut(s)	233
BisI	GCNGC	3 cut(s)	9, 43, 228
BlsI	GCNGC	3 cut(s)	10, 44, 229
Bme1390I	CCNGG	4 cut(s)	60, 138, 182, 283
BmrFI	CCNGG	4 cut(s)	60, 138, 182, 283
BmsI	GCATC	1 cut(s)	234
Bpu14I	TTCGAA	1 cut(s)	132
BpuMI	CCSGG	1 cut(s)	182
BsaBI	GATNNNNATC	1 cut(s)	334
BsaJI	CCNNGG	3 cut(s)	59, 281, 282
BsaXI	ACNNNNNCTCC	6 cut(s)	192, 222, 248, 278, 297, 327
Bse118I	RCCGGY	1 cut(s)	232
Bse8I	GATNNNNATC	1 cut(s)	334
BseBI	CCWGG	3 cut(s)	60, 138, 283
BseDI	CCNNGG	3 cut(s)	59, 281, 282
BseGI	GGATG	3 cut(s)	91, 199, 301
BseJI	GATNNNNATC	1 cut(s)	334
BseXI	GCAGC	2 cut(s)	54, 239
BsgI	GTGCAG	1 cut(s)	286
BsiSI	CCGG	2 cut(s)	181, 233
Bsp119I	TTCGAA	1 cut(s)	132
Bsp143I	GATC	3 cut(s)	148, 286, 329
BspACI	CCGC	4 cut(s)	8, 236, 311, 344
BspPI	GGATC	3 cut(s)	156, 294, 337
BspT104I	TTCGAA	1 cut(s)	132
BsrFI	RCCGGY	1 cut(s)	232
BssAI	RCCGGY	1 cut(s)	232
BssECI	CCNNGG	3 cut(s)	59, 281, 282
BssMI	GATC	3 cut(s)	148, 286, 329
Bst2UI	CCWGG	3 cut(s)	60, 138, 283
Bst4CI	ACNGT	1 cut(s)	107
BstBI	TTCGAA	1 cut(s)	132
BstC8I	GCNNGC	3 cut(s)	95, 234, 269
BstF5I	GGATG	3 cut(s)	91, 199, 301
BstH2I	RGCGCY	1 cut(s)	233
BstHHI	GCGC	1 cut(s)	232
BstKTI	GATC	3 cut(s)	151, 289, 332
BstMBI	GATC	3 cut(s)	148, 286, 329
BstMWI	GCNNNNNNNGC	2 cut(s)	233, 323
BstNI	CCWGG	3 cut(s)	60, 138, 283
BstSCI	CCNGG	4 cut(s)	58, 136, 180, 281
BstV1I	GCAGC	2 cut(s)	54, 239
BstX2I	RGATCY	1 cut(s)	148
BstYI	RGATCY	1 cut(s)	148
BtsCI	GGATG	3 cut(s)	91, 199, 301
Cac8I	GCNNGC	3 cut(s)	95, 234, 269
CfoI	GCGC	1 cut(s)	232
Cfr10I	RCCGGY	1 cut(s)	232
CsiI	ACCWGGT	1 cut(s)	136
CviAII	CATG	1 cut(s)	26
CviJI	RGCY	5 cut(s)	67, 97, 212, 271, 326
CviKI_1	RGCY	5 cut(s)	67, 97, 212, 271, 326
DpnI	GATC	3 cut(s)	150, 288, 331
DpnII	GATC	3 cut(s)	148, 286, 329
EcoRII	CCWGG	3 cut(s)	58, 136, 281
FaeI	CATG	1 cut(s)	29
FaiI	YATR	2 cut(s)	27, 113
FatI	CATG	1 cut(s)	25
Fnu4HI	GCNGC	3 cut(s)	9, 43, 228
FokI	GGATG	3 cut(s)	98, 206, 308
Fsp4HI	GCNGC	3 cut(s)	9, 43, 228
FspBI	CTAG	3 cut(s)	272, 341, 388
GlaI	GCGC	1 cut(s)	231
GluI	GCNGC	3 cut(s)	9, 43, 228
HaeII	RGCGCY	1 cut(s)	233
HapII	CCGG	2 cut(s)	181, 233
HhaI	GCGC	1 cut(s)	232
Hin1II	CATG	1 cut(s)	29
Hin6I	GCGC	1 cut(s)	230
HinP1I	GCGC	1 cut(s)	230
HinfI	GANTC	1 cut(s)	360
HpaII	CCGG	2 cut(s)	181, 233
HphI	GGTGA	2 cut(s)	364, 367
Hpy188III	TCNNGA	2 cut(s)	241, 290
HpyAV	CCTTC	1 cut(s)	75
HpyCH4III	ACNGT	1 cut(s)	107
HpyCH4V	TGCA	1 cut(s)	267
HpyF10VI	GCNNNNNNNGC	2 cut(s)	233, 323
Hsp92II	CATG	1 cut(s)	29
HspAI	GCGC	1 cut(s)	230
KroI	GCCGGC	1 cut(s)	232
KroNI	GCCGGC	1 cut(s)	234
Kzo9I	GATC	3 cut(s)	148, 286, 329
Lsp1109I	GCAGC	2 cut(s)	54, 239
LweI	GCATC	1 cut(s)	234
MabI	ACCWGGT	1 cut(s)	136
MaeI	CTAG	3 cut(s)	272, 341, 388
MaeIII	GTNAC	1 cut(s)	352
MalI	GATC	3 cut(s)	150, 288, 331
MboI	GATC	3 cut(s)	148, 286, 329
MflI	RGATCY	1 cut(s)	148
MluCI	AATT	1 cut(s)	370
MlyI	GAGTC	1 cut(s)	354
MmeI	TCCRAC	1 cut(s)	283
MnlI	CCTC	3 cut(s)	184, 250, 286
MreI	CGCCGGCG	1 cut(s)	232
MroNI	GCCGGC	1 cut(s)	232
MspI	CCGG	2 cut(s)	181, 233
MspR9I	CCNGG	4 cut(s)	60, 138, 182, 283
MvaI	CCWGG	3 cut(s)	60, 138, 283
MwoI	GCNNNNNNNGC	2 cut(s)	233, 323
NaeI	GCCGGC	1 cut(s)	234
NciI	CCSGG	1 cut(s)	182
NdeII	GATC	3 cut(s)	148, 286, 329
NgoMIV	GCCGGC	1 cut(s)	232
NlaIII	CATG	1 cut(s)	29
NmuCI	GTSAC	1 cut(s)	352
NspV	TTCGAA	1 cut(s)	132
PasI	CCCWGGG	1 cut(s)	282
PdiI	GCCGGC	1 cut(s)	234
PkrI	GCNGC	3 cut(s)	10, 44, 229
PleI	GAGTC	1 cut(s)	354
PpsI	GAGTC	1 cut(s)	354
Psp6I	CCWGG	3 cut(s)	58, 136, 281
PspGI	CCWGG	3 cut(s)	58, 136, 281
PsuI	RGATCY	1 cut(s)	148
SatI	GCNGC	3 cut(s)	9, 43, 228
Sau3AI	GATC	3 cut(s)	148, 286, 329
SchI	GAGTC	1 cut(s)	354
ScrFI	CCNGG	4 cut(s)	60, 138, 182, 283
SetI	ASST	2 cut(s)	142, 261
SexAI	ACCWGGT	1 cut(s)	136
SfaNI	GCATC	1 cut(s)	234
SfuI	TTCGAA	1 cut(s)	132
SgrAI	CRCCGGYG	1 cut(s)	232
Sse9I	AATT	1 cut(s)	370
SsiI	CCGC	4 cut(s)	8, 236, 311, 344
SspMI	CTAG	3 cut(s)	272, 341, 388
StyD4I	CCNGG	4 cut(s)	58, 136, 180, 281
TaaI	ACNGT	1 cut(s)	107
TaqI	TCGA	1 cut(s)	132
TasI	AATT	1 cut(s)	370
TauI	GCSGC	1 cut(s)	11
TseFI	GTSAC	1 cut(s)	352
TseI	GCWGC	2 cut(s)	42, 227
Tsp45I	GTSAC	1 cut(s)	352
XapI	RAATTY	1 cut(s)	370
XspI	CTAG	3 cut(s)	272, 341, 388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.