RLG00000004672

Mitochondrial import inner membrane translocase subunit

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
61318039 .. 61323039
5001 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004672

Sequence Viewer

Length: 1029 bp
ATGTCTCTCTCTCTGACTCTCTCACGAGAGAATGTCCGCTTGAGGCTATCTAACCCGAGTGCCGGCAGTAATTCTCTTCTCTCTGATCGCTCTTCCGGGGACGGCGGTGGGCTTCGGCTTCTTCGAGTTGTTGAGTTTGTTGCATTTGGTCATCTTTTGGTGACCGGAGGCGCCTTTCCCTTATGGCCGGGGGGATCTCTCGATGGTGGTGCTATGATGGCGGCTGTGAAGGCGGTGCGGCATGGTTACAAGTCTGGCAACGATGTGGCTTTTTCTGGGTGGCTCGTTGATGGTGGAAGGATTGAGAGCAAGCCGTTTGGCTATTTCATGTTTCTACCCGCGTCGGTTGATCCGGGTGGATTGGATCTGGGTTTGGTAGTGTTCGTCGATGTTGTCCGGGTTGAGGAGGATGGCGGCAATGTGGTGGCTGGTCTGGGTGTTTCGCTAGGGCTATTTTCAATACCAACAATAACTAGAAACGTTGCAACTCCTGAGATAAATTTTTTAGTAGATTCAGAGACTCTCTTTGTTTCTGAAACCCTAAACCCCCATTTTTTTGTACAATCACAATTCACAACCCAAAACAACCTTTCATTGCCAAATTCTATCTGTTGCTTGGATCTGACGCAGTTGTCCTGTTACAATAATTTCTGGGTTTTGTTGGCTTCTTCTCCAGTGATGGCTGCGAGGATTCTTGCCAACTTGCTTGTGGTTGGTTCAGGAGTGTTGGCCAGGGCTTTTGTTCAAGCATACCGCCAGGCACTTACAAATGCCTCGAAGACTGGCGTTGCTCATGAAGCAGCACAGAGTATTAGGAGAGCAAGCAAAACTATGGCCGAAGGAGAGGCAAGGCAGGTATTAGGTGTCACTGAGCATGCATCATGGGAGGAGATTGTGCAGAGATATGACACCATGTTCGAGCGGAATGCGAAAAACGGAAGCTTTTATCTCCAGTCAAAGGTCCACAGAGCTAAAGAATGCTTAGAAGACGTTTACGGAAAGAAGGCTGAGGGGATTACTGATGCATAA

Protein Analysis

343

Amino Acids

36.74

Weight (kDa)

6.1

Isoelectric Point (pI)

38.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pam16 PF03656 227 - 330 5.7e-18 Pam16
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 631
Acc36I ACCTGC 1 cut(s) 844
AccB1I GGYRCC 1 cut(s) 170
AccBSI CCGCTC 1 cut(s) 922
AccII CGCG 1 cut(s) 341
AciI CCGC 9 cut(s) 37, 105, 221, 233, 238, 339, 414, 754, 922
AclI AACGTT 1 cut(s) 480
AclWI GGATC 4 cut(s) 202, 344, 372, 627
AcoI YGGCCR 3 cut(s) 185, 729, 834
AcsI RAATTY 2 cut(s) 499, 601
AcyI GRCGYC 1 cut(s) 171
AfaI GTAC 1 cut(s) 561
AfiI CCNNNNNNNGG 3 cut(s) 62, 403, 958
AgsI TTSAA 2 cut(s) 459, 746
AjnI CCWGG 2 cut(s) 731, 756
AluBI AGCT 2 cut(s) 942, 971
AluI AGCT 2 cut(s) 942, 971
Alw26I GTCTC 2 cut(s) 9, 512
AlwI GGATC 4 cut(s) 202, 344, 372, 627
Ama87I CYCGRG 1 cut(s) 55
AoxI GGCC 3 cut(s) 185, 729, 834
ApeKI GCWGC 2 cut(s) 683, 800
ApoI RAATTY 2 cut(s) 499, 601
ArsI GACNNNNNNTTYG 2 cut(s) 899, 931
AspLEI GCGC 1 cut(s) 173
AspS9I GGNCC 1 cut(s) 961
AsuC2I CCSGG 4 cut(s) 97, 189, 354, 398
AsuHPI GGTGA 1 cut(s) 172
AvaI CYCGRG 1 cut(s) 55
AvaII GGWCC 1 cut(s) 961
BalI TGGCCA 1 cut(s) 731
BanI GGYRCC 1 cut(s) 170
BauI CACGAG 1 cut(s) 24
BbsI GAAGAC 2 cut(s) 785, 993
BbvCI CCTCAGC 1 cut(s) 1008
BbvI GCAGC 2 cut(s) 670, 812
BccI CCATC 5 cut(s) 197, 211, 284, 404, 673
BceAI ACGGC 2 cut(s) 118, 298
BcgI CGANNNNNNTGC 4 cut(s) 191, 225, 908, 942
BciT130I CCWGG 2 cut(s) 733, 758
BcnI CCSGG 4 cut(s) 97, 189, 354, 398
BcoDI GTCTC 2 cut(s) 9, 512
BfaI CTAG 2 cut(s) 446, 474
BfoI RGCGCY 1 cut(s) 174
BfuAI ACCTGC 1 cut(s) 844
BisI GCNGC 5 cut(s) 222, 239, 415, 684, 801
BlsI GCNGC 5 cut(s) 223, 240, 416, 685, 802
Bme1390I CCNGG 6 cut(s) 97, 189, 354, 398, 733, 758
Bme18I GGWCC 1 cut(s) 961
BmeT110I CYCGRG 1 cut(s) 55
BmgT120I GGNCC 1 cut(s) 961
BmiI GGNNCC 1 cut(s) 172
BmrFI CCNGG 6 cut(s) 97, 189, 354, 398, 733, 758
BmsI GCATC 2 cut(s) 887, 1012
BpiI GAAGAC 2 cut(s) 785, 993
BpmI CTGGAG 2 cut(s) 657, 935
Bpu10I CCTNAGC 1 cut(s) 1008
BpuEI CTTGAG 1 cut(s) 61
BpuMI CCSGG 4 cut(s) 97, 189, 354, 398
BsaHI GRCGYC 1 cut(s) 171
BsaJI CCNNGG 3 cut(s) 96, 188, 732
BsaWI WCCGGW 1 cut(s) 164
Bsc4I CCNNNNNNNGG 3 cut(s) 62, 403, 958
Bse118I RCCGGY 1 cut(s) 62
Bse1I ACTGG 3 cut(s) 674, 787, 952
Bse3DI GCAATG 2 cut(s) 424, 593
BseBI CCWGG 2 cut(s) 733, 758
BseDI CCNNGG 3 cut(s) 96, 188, 732
BseGI GGATG 1 cut(s) 415
BseLI CCNNNNNNNGG 3 cut(s) 62, 403, 958
BseMI GCAATG 2 cut(s) 424, 593
BseMII CTCAG 3 cut(s) 483, 861, 999
BseNI ACTGG 3 cut(s) 674, 787, 952
BseRI GAGGAG 2 cut(s) 419, 902
BseXI GCAGC 2 cut(s) 670, 812
BsgI GTGCAG 1 cut(s) 917
Bsh1236I CGCG 1 cut(s) 341
BshFI GGCC 3 cut(s) 187, 731, 836
BshNI GGYRCC 1 cut(s) 170
BsiHKCI CYCGRG 1 cut(s) 55
BsiSI CCGG 6 cut(s) 63, 96, 165, 188, 353, 397
BslFI GGGAC 1 cut(s) 113
BslI CCNNNNNNNGG 3 cut(s) 62, 403, 958
BsmAI GTCTC 2 cut(s) 9, 512
BsmFI GGGAC 1 cut(s) 113
BsmI GAATGC 2 cut(s) 931, 983
BsnI GGCC 3 cut(s) 187, 731, 836
BsoBI CYCGRG 1 cut(s) 55
Bsp1407I TGTACA 1 cut(s) 559
Bsp143I GATC 5 cut(s) 85, 194, 349, 364, 619
BspACI CCGC 9 cut(s) 37, 105, 221, 233, 238, 339, 414, 754, 922
BspANI GGCC 3 cut(s) 187, 731, 836
BspCNI CTCAG 3 cut(s) 484, 862, 1000
BspFNI CGCG 1 cut(s) 341
BspHI TCATGA 1 cut(s) 793
BspLI GGNNCC 1 cut(s) 172
BspMI ACCTGC 1 cut(s) 844
BspPI GGATC 4 cut(s) 202, 344, 372, 627
BspQI GCTCTTC 1 cut(s) 97
BspT107I GGYRCC 1 cut(s) 170
BsrBI CCGCTC 1 cut(s) 922
BsrDI GCAATG 2 cut(s) 424, 593
BsrFI RCCGGY 1 cut(s) 62
BsrGI TGTACA 1 cut(s) 559
BsrI ACTGG 3 cut(s) 674, 787, 952
BssAI RCCGGY 1 cut(s) 62
BssECI CCNNGG 3 cut(s) 96, 188, 732
BssMI GATC 5 cut(s) 85, 194, 349, 364, 619
BssNI GRCGYC 1 cut(s) 171
BssSI CACGAG 1 cut(s) 24
Bst2BI CACGAG 1 cut(s) 24
Bst2UI CCWGG 2 cut(s) 733, 758
Bst6I CTCTTC 2 cut(s) 81, 97
BstACI GRCGYC 1 cut(s) 171
BstAUI TGTACA 1 cut(s) 559
BstC8I GCNNGC 4 cut(s) 64, 311, 823, 876
BstDEI CTNAG 4 cut(s) 492, 870, 982, 1008
BstEII GGTNACC 1 cut(s) 160
BstF5I GGATG 1 cut(s) 415
BstFNI CGCG 1 cut(s) 341
BstH2I RGCGCY 1 cut(s) 174
BstHHI GCGC 1 cut(s) 173
BstKTI GATC 5 cut(s) 88, 197, 352, 367, 622
BstMAI GTCTC 2 cut(s) 9, 512
BstMBI GATC 5 cut(s) 85, 194, 349, 364, 619
BstMWI GCNNNNNNNGC 3 cut(s) 218, 230, 797
BstNI CCWGG 2 cut(s) 733, 758
BstNSI RCATGY 1 cut(s) 878
BstPI GGTNACC 1 cut(s) 160
BstSCI CCNGG 6 cut(s) 95, 187, 352, 396, 731, 756
BstUI CGCG 1 cut(s) 341
BstV1I GCAGC 2 cut(s) 670, 812
BstV2I GAAGAC 2 cut(s) 785, 993
BstX2I RGATCY 3 cut(s) 194, 364, 619
BstYI RGATCY 3 cut(s) 194, 364, 619
BsuRI GGCC 3 cut(s) 187, 731, 836
BtsCI GGATG 1 cut(s) 415
BtsIMutI CAGTG 2 cut(s) 681, 867
BveI ACCTGC 1 cut(s) 844
Cac8I GCNNGC 4 cut(s) 64, 311, 823, 876
CciI TCATGA 1 cut(s) 793
CfoI GCGC 1 cut(s) 173
Cfr10I RCCGGY 1 cut(s) 62
Cfr13I GGNCC 1 cut(s) 961
CseI GACGC 2 cut(s) 330, 634
Csp6I GTAC 1 cut(s) 560
CviAII CATG 6 cut(s) 242, 328, 794, 875, 882, 913
CviQI GTAC 1 cut(s) 560
DdeI CTNAG 4 cut(s) 492, 870, 982, 1008
DinI GGCGCC 1 cut(s) 172
DpnI GATC 5 cut(s) 87, 196, 351, 366, 621
DpnII GATC 5 cut(s) 85, 194, 349, 364, 619
DrdI GACNNNNNNGTC 1 cut(s) 631
DseDI GACNNNNNNGTC 1 cut(s) 631
EaeI YGGCCR 3 cut(s) 185, 729, 834
Eam1104I CTCTTC 2 cut(s) 81, 97
EarI CTCTTC 2 cut(s) 81, 97
Eco47I GGWCC 1 cut(s) 961
Eco88I CYCGRG 1 cut(s) 55
Eco91I GGTNACC 1 cut(s) 160
EcoO65I GGTNACC 1 cut(s) 160
EcoRII CCWGG 2 cut(s) 731, 756
EcoT22I ATGCAT 2 cut(s) 880, 1027
EgeI GGCGCC 1 cut(s) 172
EheI GGCGCC 1 cut(s) 172
FaeI CATG 6 cut(s) 245, 331, 797, 878, 885, 916
FaqI GGGAC 1 cut(s) 113
FatI CATG 6 cut(s) 241, 327, 793, 874, 881, 912
FauI CCCGC 1 cut(s) 346
Fnu4HI GCNGC 5 cut(s) 222, 239, 415, 684, 801
FokI GGATG 1 cut(s) 422
Fsp4HI GCNGC 5 cut(s) 222, 239, 415, 684, 801
FspBI CTAG 2 cut(s) 446, 474
GlaI GCGC 1 cut(s) 172
GluI GCNGC 5 cut(s) 222, 239, 415, 684, 801
GsuI CTGGAG 2 cut(s) 657, 935
HaeII RGCGCY 1 cut(s) 174
HaeIII GGCC 3 cut(s) 187, 731, 836
HapII CCGG 6 cut(s) 63, 96, 165, 188, 353, 397
HgaI GACGC 2 cut(s) 330, 634
HhaI GCGC 1 cut(s) 173
Hin1I GRCGYC 1 cut(s) 171
Hin1II CATG 6 cut(s) 245, 331, 797, 878, 885, 916
Hin6I GCGC 1 cut(s) 171
HinP1I GCGC 1 cut(s) 171
HindIII AAGCTT 1 cut(s) 940
HinfI GANTC 4 cut(s) 16, 512, 520, 691
HpaII CCGG 6 cut(s) 63, 96, 165, 188, 353, 397
HphI GGTGA 1 cut(s) 172
Hpy166II GTNNAC 2 cut(s) 964, 994
Hpy188I TCNGA 5 cut(s) 15, 85, 517, 535, 624
Hpy188III TCNNGA 5 cut(s) 24, 200, 491, 720, 794
Hpy8I GTNNAC 2 cut(s) 964, 994
Hpy99I CGWCG 2 cut(s) 346, 389
HpyAV CCTTC 4 cut(s) 223, 291, 833, 997
HpyCH4IV ACGT 2 cut(s) 480, 990
HpyCH4V TGCA 5 cut(s) 143, 485, 878, 898, 1025
HpyF10VI GCNNNNNNNGC 3 cut(s) 218, 230, 797
HpyF3I CTNAG 4 cut(s) 492, 870, 982, 1008
HpySE526I ACGT 2 cut(s) 480, 990
Hsp92I GRCGYC 1 cut(s) 171
Hsp92II CATG 6 cut(s) 245, 331, 797, 878, 885, 916
HspAI GCGC 1 cut(s) 171
KasI GGCGCC 1 cut(s) 170
KroI GCCGGC 1 cut(s) 62
KroNI GCCGGC 1 cut(s) 64
Kzo9I GATC 5 cut(s) 85, 194, 349, 364, 619
LguI GCTCTTC 1 cut(s) 97
Lsp1109I GCAGC 2 cut(s) 670, 812
LweI GCATC 2 cut(s) 887, 1012
MaeI CTAG 2 cut(s) 446, 474
MaeII ACGT 2 cut(s) 480, 990
MaeIII GTNAC 4 cut(s) 160, 245, 638, 865
MalI GATC 5 cut(s) 87, 196, 351, 366, 621
MbiI CCGCTC 1 cut(s) 922
MboI GATC 5 cut(s) 85, 194, 349, 364, 619
MboII GAAGA 6 cut(s) 68, 84, 113, 660, 790, 998
MflI RGATCY 3 cut(s) 194, 364, 619
MlsI TGGCCA 1 cut(s) 731
MluCI AATT 5 cut(s) 70, 499, 569, 601, 646
MluNI TGGCCA 1 cut(s) 731
Mly113I GGCGCC 1 cut(s) 171
MlyI GAGTC 2 cut(s) 10, 514
MnlI CCTC 9 cut(s) 36, 161, 397, 400, 681, 784, 838, 880, 1003
Mox20I TGGCCA 1 cut(s) 731
Mph1103I ATGCAT 2 cut(s) 880, 1027
MroNI GCCGGC 1 cut(s) 62
MscI TGGCCA 1 cut(s) 731
Msp20I TGGCCA 1 cut(s) 731
MspI CCGG 6 cut(s) 63, 96, 165, 188, 353, 397
MspR9I CCNGG 6 cut(s) 97, 189, 354, 398, 733, 758
Mva1269I GAATGC 2 cut(s) 931, 983
MvaI CCWGG 2 cut(s) 733, 758
MvnI CGCG 1 cut(s) 341
MwoI GCNNNNNNNGC 3 cut(s) 218, 230, 797
NaeI GCCGGC 1 cut(s) 64
NarI GGCGCC 1 cut(s) 171
NciI CCSGG 4 cut(s) 97, 189, 354, 398
NdeII GATC 5 cut(s) 85, 194, 349, 364, 619
NgoMIV GCCGGC 1 cut(s) 62
NlaIII CATG 6 cut(s) 245, 331, 797, 878, 885, 916
NlaIV GGNNCC 1 cut(s) 172
NmuCI GTSAC 2 cut(s) 160, 865
NsiI ATGCAT 2 cut(s) 880, 1027
NspI RCATGY 1 cut(s) 878
PaeI GCATGC 1 cut(s) 878
PagI TCATGA 1 cut(s) 793
PciSI GCTCTTC 1 cut(s) 97
PcsI WCGNNNNNNNCGW 1 cut(s) 121
PctI GAATGC 2 cut(s) 931, 983
PdiI GCCGGC 1 cut(s) 64
PfeI GAWTC 2 cut(s) 512, 691
PkrI GCNGC 5 cut(s) 223, 240, 416, 685, 802
PleI GAGTC 2 cut(s) 10, 514
PluTI GGCGCC 1 cut(s) 174
PpsI GAGTC 2 cut(s) 10, 514
Psp1406I AACGTT 1 cut(s) 480
Psp6I CCWGG 2 cut(s) 731, 756
PspEI GGTNACC 1 cut(s) 160
PspGI CCWGG 2 cut(s) 731, 756
PspN4I GGNNCC 1 cut(s) 172
PspPI GGNCC 1 cut(s) 961
PsuI RGATCY 3 cut(s) 194, 364, 619
RsaI GTAC 1 cut(s) 561
RsaNI GTAC 1 cut(s) 560
SapI GCTCTTC 1 cut(s) 97
SatI GCNGC 5 cut(s) 222, 239, 415, 684, 801
Sau3AI GATC 5 cut(s) 85, 194, 349, 364, 619
Sau96I GGNCC 1 cut(s) 961
SchI GAGTC 2 cut(s) 10, 514
ScrFI CCNGG 6 cut(s) 97, 189, 354, 398, 733, 758
SetI ASST 8 cut(s) 483, 591, 858, 865, 944, 963, 973, 993
SfaNI GCATC 2 cut(s) 887, 1012
SfoI GGCGCC 1 cut(s) 172
SinI GGWCC 1 cut(s) 961
SmlI CTYRAG 1 cut(s) 40
SmoI CTYRAG 1 cut(s) 40
SphI GCATGC 1 cut(s) 878
Sse9I AATT 5 cut(s) 70, 499, 569, 601, 646
SsiI CCGC 9 cut(s) 37, 105, 221, 233, 238, 339, 414, 754, 922
SspDI GGCGCC 1 cut(s) 170
SspMI CTAG 2 cut(s) 446, 474
StyD4I CCNGG 6 cut(s) 95, 187, 352, 396, 731, 756
TaiI ACGT 2 cut(s) 483, 993
TaqI TCGA 5 cut(s) 124, 201, 387, 776, 918
TasI AATT 5 cut(s) 70, 499, 569, 601, 646
TatI WGTACW 1 cut(s) 559
TauI GCSGC 3 cut(s) 224, 241, 417
TfiI GAWTC 2 cut(s) 512, 691
TscAI CASTG 2 cut(s) 681, 874
TseFI GTSAC 2 cut(s) 160, 865
TseI GCWGC 2 cut(s) 683, 800
Tsp45I GTSAC 2 cut(s) 160, 865
TspDTI ATGAA 3 cut(s) 316, 582, 810
TspGWI ACGGA 2 cut(s) 951, 1011
TspRI CASTG 2 cut(s) 681, 874
VpaK11BI GGWCC 1 cut(s) 961
XapI RAATTY 2 cut(s) 499, 601
XceI RCATGY 1 cut(s) 878
XcmI CCANNNNNNNNNTGG 1 cut(s) 706
XspI CTAG 2 cut(s) 446, 474
Zsp2I ATGCAT 2 cut(s) 880, 1027
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.