Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000739

Physical Location & Seq

Genomic Coordinates Forward (+)

67565052 .. 67589767

Gene Structure 24716 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG467400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGACGATGGAGGATGTGTGGAAAGACATAAGCCTAGCTTCTCTTTGTGACCACAACTCACCGGCGGCTGCTACCGGCAGCTCCGCCTCACGTAACGACTCTGCAGCTATTCGTGGCTTCATTTTTCAGGATTTCATGGCGGCGGCGTCCACCAAACTCACTCCTTCTTCTCTTGCTACTGATCTAGCGCCACTGCCACAGCCACCGGCCACTCTCCTCAGCTTGAGTTCTTCCGGTTCCGATCATTTTCAACAGTACCAAGTTCAAAGCGCTACTGCTACTGCTAGTACCAACACTACTGCTCCACCAATACCAGTGACGCCAAACGCGCAAAGACTGCGCCGTATTAGTACTATTCCTTCATCTTCTGTGATCTCTTTCTCCAATAAGCACGCGAATAACTCGTCGGAGGCTTTGGATTCTTCCCCGTCTTACAAGAAAAGGGCGTTAGAAGAAAATGGAGAGAACTCTAGGCATGTCCGGCATAAGCGGATGATCAAGAACAGAGAATCGGCCTCTCGCTCCCGAGCACGAAAGCAAGCTTATACAAGTGAGCTGGAACTTGAACTAGCACATTTGCGGGAGGAGAATGCCAGACTTAAAAGACAGCAAGAAAAGATTCGTAAATATAGAGTACTTATGAAAGGAGTTCAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009911 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

219

Amino Acids

24.08

Weight (kDa)

9.99

Isoelectric Point (pI)

62.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	161 - 211	1.1e-11	bZIP transcription factor
bZIP_2	PF07716	161 - 209	7.6e-09	Basic region leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35900 AT4G35900
fragaria_vesca	FvH4_1g11270 FvH4_1g11270 FvH4_2g38080 FvH4_2g38080
malus_domestica	MD02G1125100.v1.1 MD15G1008300.v1.1 MD15G1240800.v1.1
prunus_persica	Prupe.1G361100_v2.0.a1 Prupe.7G173300_v2.0.a1
pyrus_communis	pycom02g09770 pycom08g00780 pycom15g00670 pycom15g21240
rosa_chinensis	RchiOBHm_Chr2g0098731 RchiOBHm_Chr5g0020811 RchiOBHm_Chr5g0069801 RchiOBHm_Chr6g0303481
rosa_laevigata	RLG00000001084 RLG00000001969 RLG00000004672 RLG00000011081 RLG00000015050 RLG00000015656 RLG00000016824 RLG00000024869 RLG00000030190 RLG00000033969 RLG00000035356
rosa_multiflora	Rmu_sc0002776.1_g000024 Rmu_ssc0000114.1_g000047
rosa_roxburghii	Rroxscaffold_2G00107580 Rroxscaffold_2G00143780 Rroxscaffold_7G00164710 Rroxscaffold_7G00172730
rosa_rugosa	Rorug02G0074200 Rorug06G0321600 Rorug06G0321700
rosa_samantha	Rh1AG062500 Rh1BG080000 Rh1DG103800 Rh2AG122100 Rh2BG125600 Rh2CG116700 Rh2CG126700 Rh2CG345200 Rh2DG127700 Rh3DG072100 Rh5CG499500 Rh6AG436100 Rh6BG117000 Rh6BG117100 Rh6BG117200 Rh6BG467400 Rh6CG115500 Rh6CG115600 Rh6CG198000 Rh6CG448100 Rh6DG104000 Rh6DG434700 Rh7AG017700 Rh7AG193200 Rh7AG263200 Rh7BG017300 Rh7BG449800 Rh7DG018000 Rh7DG269900
rosa_wichuraiana	Rw0G004200 Rw5G015480 Rw6G037740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	329, 395
AciI	CCGC	6 cut(s)	65, 84, 140, 143, 490, 580
AcoI	YGGCCR	1 cut(s)	207
AcyI	GRCGYC	2 cut(s)	146, 320
AfaI	GTAC	4 cut(s)	257, 289, 352, 636
AfeI	AGCGCT	1 cut(s)	271
AgsI	TTSAA	4 cut(s)	251, 266, 566, 653
AluBI	AGCT	6 cut(s)	38, 81, 107, 222, 542, 556
AluI	AGCT	6 cut(s)	38, 81, 107, 222, 542, 556
Alw21I	GWGCWC	1 cut(s)	532
Ama87I	CYCGRG	1 cut(s)	525
Aor51HI	AGCGCT	1 cut(s)	271
AoxI	GGCC	2 cut(s)	207, 513
ApeKI	GCWGC	3 cut(s)	68, 78, 104
ArsI	GACNNNNNNTTYG	2 cut(s)	389, 421
Asp700I	GAANNNNTTC	1 cut(s)	618
AspLEI	GCGC	4 cut(s)	190, 272, 331, 342
AsuHPI	GGTGA	1 cut(s)	51
AvaI	CYCGRG	1 cut(s)	525
BarI	GAAGNNNNNNTAC	2 cut(s)	343, 375
Bbv12I	GWGCWC	1 cut(s)	532
BbvCI	CCTCAGC	1 cut(s)	218
BbvI	GCAGC	3 cut(s)	55, 90, 116
BceAI	ACGGC	1 cut(s)	327
BclI	TGATCA	1 cut(s)	495
BfaI	CTAG	5 cut(s)	35, 185, 285, 471, 569
BfmI	CTRYAG	1 cut(s)	102
BfoI	RGCGCY	2 cut(s)	191, 273
BisI	GCNGC	6 cut(s)	66, 69, 79, 105, 141, 144
BlsI	GCNGC	6 cut(s)	67, 70, 80, 106, 142, 145
BmcAI	AGTACT	2 cut(s)	352, 636
BmeT110I	CYCGRG	1 cut(s)	525
BmiI	GGNNCC	1 cut(s)	238
Bpu10I	CCTNAGC	1 cut(s)	218
BpuEI	CTTGAG	1 cut(s)	244
BsaAI	YACGTR	1 cut(s)	92
BsaHI	GRCGYC	2 cut(s)	146, 320
BsaWI	WCCGGW	1 cut(s)	233
BsaXI	ACNNNNNCTCC	3 cut(s)	32, 286, 316
Bse118I	RCCGGY	3 cut(s)	61, 74, 205
Bse1I	ACTGG	1 cut(s)	314
BseGI	GGATG	2 cut(s)	19, 498
BseMII	CTCAG	1 cut(s)	232
BseNI	ACTGG	1 cut(s)	314
BseRI	GAGGAG	2 cut(s)	206, 599
BseXI	GCAGC	3 cut(s)	55, 90, 116
Bsh1236I	CGCG	2 cut(s)	329, 395
BshFI	GGCC	2 cut(s)	209, 515
BsiHKAI	GWGCWC	1 cut(s)	532
BsiHKCI	CYCGRG	1 cut(s)	525
BsiSI	CCGG	5 cut(s)	62, 75, 206, 234, 481
BsmI	GAATGC	1 cut(s)	595
BsnI	GGCC	2 cut(s)	209, 515
BsoBI	CYCGRG	1 cut(s)	525
Bsp1286I	GDGCHC	1 cut(s)	532
Bsp143I	GATC	4 cut(s)	181, 241, 372, 495
BspACI	CCGC	6 cut(s)	65, 84, 140, 143, 490, 580
BspANI	GGCC	2 cut(s)	209, 515
BspCNI	CTCAG	1 cut(s)	231
BspFNI	CGCG	2 cut(s)	329, 395
BspLI	GGNNCC	1 cut(s)	238
BspMAI	CTGCAG	1 cut(s)	106
BsrFI	RCCGGY	3 cut(s)	61, 74, 205
BsrI	ACTGG	1 cut(s)	314
BssAI	RCCGGY	3 cut(s)	61, 74, 205
BssMI	GATC	4 cut(s)	181, 241, 372, 495
BssNI	GRCGYC	2 cut(s)	146, 320
Bst4CI	ACNGT	1 cut(s)	255
BstACI	GRCGYC	2 cut(s)	146, 320
BstAPI	GCANNNNNTGC	1 cut(s)	337
BstBAI	YACGTR	1 cut(s)	92
BstC8I	GCNNGC	2 cut(s)	393, 540
BstDEI	CTNAG	1 cut(s)	218
BstF5I	GGATG	2 cut(s)	19, 498
BstFNI	CGCG	2 cut(s)	329, 395
BstH2I	RGCGCY	2 cut(s)	191, 273
BstHHI	GCGC	4 cut(s)	190, 272, 331, 342
BstKTI	GATC	4 cut(s)	184, 244, 375, 498
BstMBI	GATC	4 cut(s)	181, 241, 372, 495
BstMWI	GCNNNNNNNGC	3 cut(s)	328, 337, 481
BstNSI	RCATGY	1 cut(s)	479
BstSFI	CTRYAG	1 cut(s)	102
BstUI	CGCG	2 cut(s)	329, 395
BstV1I	GCAGC	3 cut(s)	55, 90, 116
BsuRI	GGCC	2 cut(s)	209, 515
BtsCI	GGATG	2 cut(s)	19, 498
BtsI	GCAGTG	1 cut(s)	191
BtsIMutI	CAGTG	2 cut(s)	191, 321
Cac8I	GCNNGC	2 cut(s)	393, 540
CfoI	GCGC	4 cut(s)	190, 272, 331, 342
Cfr10I	RCCGGY	3 cut(s)	61, 74, 205
CseI	GACGC	2 cut(s)	135, 328
Csp6I	GTAC	4 cut(s)	256, 288, 351, 635
CviAII	CATG	2 cut(s)	136, 476
CviQI	GTAC	4 cut(s)	256, 288, 351, 635
DdeI	CTNAG	1 cut(s)	218
DpnI	GATC	4 cut(s)	183, 243, 374, 497
DpnII	GATC	4 cut(s)	181, 241, 372, 495
EaeI	YGGCCR	1 cut(s)	207
EciI	GGCGGA	1 cut(s)	73
Eco47III	AGCGCT	1 cut(s)	271
Eco88I	CYCGRG	1 cut(s)	525
FaeI	CATG	2 cut(s)	139, 479
FaiI	YATR	7 cut(s)	29, 137, 477, 486, 546, 630, 641
FalI	AAGNNNNNCTT	2 cut(s)	22, 54
FatI	CATG	2 cut(s)	135, 475
FauI	CCCGC	1 cut(s)	573
FbaI	TGATCA	1 cut(s)	495
Fnu4HI	GCNGC	6 cut(s)	66, 69, 79, 105, 141, 144
FokI	GGATG	2 cut(s)	26, 505
Fsp4HI	GCNGC	6 cut(s)	66, 69, 79, 105, 141, 144
FspBI	CTAG	5 cut(s)	35, 185, 285, 471, 569
GlaI	GCGC	4 cut(s)	189, 271, 330, 341
GluI	GCNGC	6 cut(s)	66, 69, 79, 105, 141, 144
HaeII	RGCGCY	2 cut(s)	191, 273
HaeIII	GGCC	2 cut(s)	209, 515
HapII	CCGG	5 cut(s)	62, 75, 206, 234, 481
HgaI	GACGC	2 cut(s)	135, 328
HhaI	GCGC	4 cut(s)	190, 272, 331, 342
Hin1I	GRCGYC	2 cut(s)	146, 320
Hin1II	CATG	2 cut(s)	139, 479
Hin6I	GCGC	4 cut(s)	188, 270, 329, 340
HinP1I	GCGC	4 cut(s)	188, 270, 329, 340
HindIII	AAGCTT	1 cut(s)	540
HinfI	GANTC	4 cut(s)	98, 419, 509, 619
HpaII	CCGG	5 cut(s)	62, 75, 206, 234, 481
HphI	GGTGA	1 cut(s)	51
Hpy166II	GTNNAC	1 cut(s)	150
Hpy188I	TCNGA	2 cut(s)	241, 409
Hpy188III	TCNNGA	3 cut(s)	128, 499, 525
Hpy8I	GTNNAC	1 cut(s)	150
Hpy99I	CGWCG	1 cut(s)	409
HpyAV	CCTTC	2 cut(s)	174, 369
HpyCH4III	ACNGT	1 cut(s)	255
HpyCH4IV	ACGT	1 cut(s)	91
HpyCH4V	TGCA	1 cut(s)	104
HpyF10VI	GCNNNNNNNGC	3 cut(s)	328, 337, 481
HpyF3I	CTNAG	1 cut(s)	218
HpySE526I	ACGT	1 cut(s)	91
Hsp92I	GRCGYC	2 cut(s)	146, 320
Hsp92II	CATG	2 cut(s)	139, 479
HspAI	GCGC	4 cut(s)	188, 270, 329, 340
Ksp22I	TGATCA	1 cut(s)	495
Kzo9I	GATC	4 cut(s)	181, 241, 372, 495
LmnI	GCTCC	3 cut(s)	86, 307, 527
LpnPI	CCDG	9 cut(s)	75, 88, 113, 219, 247, 327, 494, 542, 607
Lsp1109I	GCAGC	3 cut(s)	55, 90, 116
MaeI	CTAG	5 cut(s)	35, 185, 285, 471, 569
MaeII	ACGT	1 cut(s)	91
MaeIII	GTNAC	3 cut(s)	47, 92, 316
MalI	GATC	4 cut(s)	183, 243, 374, 497
MboI	GATC	4 cut(s)	181, 241, 372, 495
MboII	GAAGA	5 cut(s)	159, 222, 357, 414, 464
MhlI	GDGCHC	1 cut(s)	532
MlyI	GAGTC	1 cut(s)	92
MmeI	TCCRAC	1 cut(s)	387
MnlI	CCTC	6 cut(s)	4, 97, 227, 403, 526, 577
MroXI	GAANNNNTTC	1 cut(s)	618
MseI	TTAA	1 cut(s)	600
MspI	CCGG	5 cut(s)	62, 75, 206, 234, 481
Mva1269I	GAATGC	1 cut(s)	595
MvnI	CGCG	2 cut(s)	329, 395
MwoI	GCNNNNNNNGC	3 cut(s)	328, 337, 481
NdeII	GATC	4 cut(s)	181, 241, 372, 495
NlaIII	CATG	2 cut(s)	139, 479
NlaIV	GGNNCC	1 cut(s)	238
NmuCI	GTSAC	2 cut(s)	47, 316
NspI	RCATGY	1 cut(s)	479
PctI	GAATGC	1 cut(s)	595
PdmI	GAANNNNTTC	1 cut(s)	618
PfeI	GAWTC	3 cut(s)	419, 509, 619
PkrI	GCNGC	6 cut(s)	67, 70, 80, 106, 142, 145
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
Ppu21I	YACGTR	1 cut(s)	92
PspN4I	GGNNCC	1 cut(s)	238
PstI	CTGCAG	1 cut(s)	106
RsaI	GTAC	4 cut(s)	257, 289, 352, 636
RsaNI	GTAC	4 cut(s)	256, 288, 351, 635
SaqAI	TTAA	1 cut(s)	600
SatI	GCNGC	6 cut(s)	66, 69, 79, 105, 141, 144
Sau3AI	GATC	4 cut(s)	181, 241, 372, 495
ScaI	AGTACT	2 cut(s)	352, 636
SchI	GAGTC	1 cut(s)	92
SduI	GDGCHC	1 cut(s)	532
SetI	ASST	7 cut(s)	40, 83, 94, 109, 224, 544, 558
SfcI	CTRYAG	1 cut(s)	102
SgrAI	CRCCGGYG	1 cut(s)	61
SmlI	CTYRAG	1 cut(s)	223
SmoI	CTYRAG	1 cut(s)	223
SsiI	CCGC	6 cut(s)	65, 84, 140, 143, 490, 580
SspMI	CTAG	5 cut(s)	35, 185, 285, 471, 569
TaaI	ACNGT	1 cut(s)	255
TaiI	ACGT	1 cut(s)	94
TatI	WGTACW	2 cut(s)	350, 634
TauI	GCSGC	3 cut(s)	68, 143, 146
TfiI	GAWTC	3 cut(s)	419, 509, 619
Tru1I	TTAA	1 cut(s)	600
Tru9I	TTAA	1 cut(s)	600
TscAI	CASTG	2 cut(s)	198, 321
TseFI	GTSAC	2 cut(s)	47, 316
TseI	GCWGC	3 cut(s)	68, 78, 104
Tsp45I	GTSAC	2 cut(s)	47, 316
TspDTI	ATGAA	4 cut(s)	109, 124, 351, 656
TspRI	CASTG	2 cut(s)	198, 321
XceI	RCATGY	1 cut(s)	479
XmnI	GAANNNNTTC	1 cut(s)	618
XspI	CTAG	5 cut(s)	35, 185, 285, 471, 569
ZrmI	AGTACT	2 cut(s)	352, 636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.