Rh7AG017700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000739
Physical Location & Seq
Forward (+)
1176793 .. 1187499
10707 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG017700.1

Sequence Viewer

Length: 441 bp
ATGTTTCTACCAACAACGTTCGAACCAGGGGGATTGAATCTGGTTTTGGTGGTGTTTATCGATGTTGTCCGGGTCGCGGAGGATGGCGGCGATAAGGTGGCTGGTCTGGACGCTTGGCTGGGAACGATGGGATCGGTGACTGTGGTAGCAGCTCCGGTGGACTTTGTTGCTGTCAGTGGAGTTTCTGTGCTAGCTAAGATGTGGCTTTCTATCAAAATCTTGAGAGGAGAAGGTCCAAGTTTTGCCAGTGGGATCTGCTCAAATGCGTGGTACACCATATCCGGATTATCCGCACATCATAAACGCGTAGGTACAATAGGGCAAAAGGCCGGTGAGACAATTAAGAAAAAAATTGAAGGGTACAATAGGCCAAGTGAGTTGCAGACCTATCATACTGGAAACTCATCGATAAAATGGGATGGTAATAATCAGTTGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

15.55

Weight (kDa)

6.83

Isoelectric Point (pI)

27.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 77, 306
AccIII TCCGGA 1 cut(s) 281
AciI CCGC 3 cut(s) 77, 87, 291
AclI AACGTT 1 cut(s) 17
AclWI GGATC 2 cut(s) 139, 260
AfaI GTAC 3 cut(s) 272, 313, 362
AfiI CCNNNNNNNGG 1 cut(s) 76
AflIII ACRYGT 1 cut(s) 304
AgsI TTSAA 2 cut(s) 37, 356
AjnI CCWGG 1 cut(s) 25
AjuI GAANNNNNNNTTGG 2 cut(s) 29, 61
AluBI AGCT 2 cut(s) 152, 194
AluI AGCT 2 cut(s) 152, 194
Alw26I GTCTC 1 cut(s) 329
AlwI GGATC 2 cut(s) 139, 260
Aor13HI TCCGGA 1 cut(s) 281
AoxI GGCC 2 cut(s) 327, 368
ApeKI GCWGC 1 cut(s) 149
AspS9I GGNCC 1 cut(s) 233
AsuC2I CCSGG 1 cut(s) 71
AsuHPI GGTGA 2 cut(s) 148, 344
AsuII TTCGAA 1 cut(s) 21
AsuNHI GCTAGC 1 cut(s) 190
AvaII GGWCC 1 cut(s) 233
BbvI GCAGC 1 cut(s) 161
BccI CCATC 3 cut(s) 77, 121, 413
BciT130I CCWGG 1 cut(s) 27
BcnI CCSGG 1 cut(s) 71
BcoDI GTCTC 1 cut(s) 329
BfaI CTAG 1 cut(s) 191
BisI GCNGC 2 cut(s) 88, 150
BlsI GCNGC 2 cut(s) 89, 151
Bme1390I CCNGG 2 cut(s) 27, 71
Bme18I GGWCC 1 cut(s) 233
BmgT120I GGNCC 1 cut(s) 233
BmrFI CCNGG 2 cut(s) 27, 71
BmtI GCTAGC 1 cut(s) 194
Bpu14I TTCGAA 1 cut(s) 21
BpuEI CTTGAG 1 cut(s) 241
BpuMI CCSGG 1 cut(s) 71
Bsa29I ATCGAT 2 cut(s) 60, 407
BsaJI CCNNGG 1 cut(s) 26
BsaWI WCCGGW 2 cut(s) 154, 281
BsaXI ACNNNNNCTCC 2 cut(s) 171, 201
Bsc4I CCNNNNNNNGG 1 cut(s) 76
Bse118I RCCGGY 1 cut(s) 329
Bse1I ACTGG 2 cut(s) 246, 400
BseAI TCCGGA 1 cut(s) 281
BseBI CCWGG 1 cut(s) 27
BseCI ATCGAT 2 cut(s) 60, 407
BseDI CCNNGG 1 cut(s) 26
BseGI GGATG 2 cut(s) 88, 424
BseLI CCNNNNNNNGG 1 cut(s) 76
BseNI ACTGG 2 cut(s) 246, 400
BseRI GAGGAG 1 cut(s) 240
BseXI GCAGC 1 cut(s) 161
BseYI CCCAGC 1 cut(s) 118
Bsh1236I CGCG 2 cut(s) 77, 306
BshFI GGCC 2 cut(s) 329, 370
BshVI ATCGAT 2 cut(s) 60, 407
BsiSI CCGG 4 cut(s) 70, 155, 282, 330
BslI CCNNNNNNNGG 1 cut(s) 76
BsmAI GTCTC 1 cut(s) 329
BsnI GGCC 2 cut(s) 329, 370
Bsp119I TTCGAA 1 cut(s) 21
Bsp13I TCCGGA 1 cut(s) 281
Bsp143I GATC 2 cut(s) 131, 252
BspACI CCGC 3 cut(s) 77, 87, 291
BspANI GGCC 2 cut(s) 329, 370
BspDI ATCGAT 2 cut(s) 60, 407
BspEI TCCGGA 1 cut(s) 281
BspFNI CGCG 2 cut(s) 77, 306
BspOI GCTAGC 1 cut(s) 194
BspPI GGATC 2 cut(s) 139, 260
BspT104I TTCGAA 1 cut(s) 21
BsrFI RCCGGY 1 cut(s) 329
BsrI ACTGG 2 cut(s) 246, 400
BssAI RCCGGY 1 cut(s) 329
BssECI CCNNGG 1 cut(s) 26
BssMI GATC 2 cut(s) 131, 252
Bst2UI CCWGG 1 cut(s) 27
Bst4CI ACNGT 1 cut(s) 142
BstBI TTCGAA 1 cut(s) 21
BstC8I GCNNGC 1 cut(s) 192
BstDEI CTNAG 1 cut(s) 195
BstF5I GGATG 2 cut(s) 88, 424
BstFNI CGCG 2 cut(s) 77, 306
BstKTI GATC 2 cut(s) 134, 255
BstMAI GTCTC 1 cut(s) 329
BstMBI GATC 2 cut(s) 131, 252
BstNI CCWGG 1 cut(s) 27
BstSCI CCNGG 2 cut(s) 25, 69
BstUI CGCG 2 cut(s) 77, 306
BstV1I GCAGC 1 cut(s) 161
BstX2I RGATCY 1 cut(s) 252
BstYI RGATCY 1 cut(s) 252
Bsu15I ATCGAT 2 cut(s) 60, 407
BsuRI GGCC 2 cut(s) 329, 370
BsuTUI ATCGAT 2 cut(s) 60, 407
BtsCI GGATG 2 cut(s) 88, 424
BtsIMutI CAGTG 2 cut(s) 181, 253
Cac8I GCNNGC 1 cut(s) 192
Cfr10I RCCGGY 1 cut(s) 329
Cfr13I GGNCC 1 cut(s) 233
ClaI ATCGAT 2 cut(s) 60, 407
CseI GACGC 1 cut(s) 119
Csp6I GTAC 3 cut(s) 271, 312, 361
CviJI RGCY 7 cut(s) 101, 118, 152, 194, 205, 329, 370
CviKI_1 RGCY 7 cut(s) 101, 118, 152, 194, 205, 329, 370
CviQI GTAC 3 cut(s) 271, 312, 361
DdeI CTNAG 1 cut(s) 195
DpnI GATC 2 cut(s) 133, 254
DpnII GATC 2 cut(s) 131, 252
Eco47I GGWCC 1 cut(s) 233
EcoRII CCWGG 1 cut(s) 25
FaiI YATR 3 cut(s) 278, 300, 393
Fnu4HI GCNGC 2 cut(s) 88, 150
FokI GGATG 2 cut(s) 95, 431
Fsp4HI GCNGC 2 cut(s) 88, 150
FspBI CTAG 1 cut(s) 191
GluI GCNGC 2 cut(s) 88, 150
GsaI CCCAGC 1 cut(s) 122
HaeIII GGCC 2 cut(s) 329, 370
HapII CCGG 4 cut(s) 70, 155, 282, 330
HgaI GACGC 1 cut(s) 119
HinfI GANTC 1 cut(s) 37
HpaII CCGG 4 cut(s) 70, 155, 282, 330
HphI GGTGA 2 cut(s) 148, 344
Hpy166II GTNNAC 2 cut(s) 160, 273
Hpy188III TCNNGA 3 cut(s) 107, 220, 282
Hpy8I GTNNAC 2 cut(s) 160, 273
HpyAV CCTTC 2 cut(s) 224, 350
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4IV ACGT 1 cut(s) 17
HpyCH4V TGCA 1 cut(s) 382
HpyF3I CTNAG 1 cut(s) 195
HpySE526I ACGT 1 cut(s) 17
Kpn2I TCCGGA 1 cut(s) 281
Kzo9I GATC 2 cut(s) 131, 252
LmnI GCTCC 1 cut(s) 157
Lsp1109I GCAGC 1 cut(s) 161
MaeI CTAG 1 cut(s) 191
MaeII ACGT 1 cut(s) 17
MaeIII GTNAC 1 cut(s) 136
MalI GATC 2 cut(s) 133, 254
MboI GATC 2 cut(s) 131, 252
MflI RGATCY 1 cut(s) 252
MluCI AATT 2 cut(s) 339, 351
MluI ACGCGT 1 cut(s) 304
MmeI TCCRAC 1 cut(s) 414
MnlI CCTC 2 cut(s) 73, 218
MroI TCCGGA 1 cut(s) 281
MseI TTAA 1 cut(s) 342
MspI CCGG 4 cut(s) 70, 155, 282, 330
MspR9I CCNGG 2 cut(s) 27, 71
MvaI CCWGG 1 cut(s) 27
MvnI CGCG 2 cut(s) 77, 306
NciI CCSGG 1 cut(s) 71
NdeII GATC 2 cut(s) 131, 252
NheI GCTAGC 1 cut(s) 190
NmuCI GTSAC 1 cut(s) 136
NspV TTCGAA 1 cut(s) 21
PfeI GAWTC 1 cut(s) 37
PkrI GCNGC 2 cut(s) 89, 151
Psp1406I AACGTT 1 cut(s) 17
Psp6I CCWGG 1 cut(s) 25
PspFI CCCAGC 1 cut(s) 118
PspGI CCWGG 1 cut(s) 25
PspPI GGNCC 1 cut(s) 233
PsuI RGATCY 1 cut(s) 252
RsaI GTAC 3 cut(s) 272, 313, 362
RsaNI GTAC 3 cut(s) 271, 312, 361
SaqAI TTAA 1 cut(s) 342
SatI GCNGC 2 cut(s) 88, 150
Sau3AI GATC 2 cut(s) 131, 252
Sau96I GGNCC 1 cut(s) 233
ScrFI CCNGG 2 cut(s) 27, 71
SetI ASST 7 cut(s) 20, 99, 154, 196, 235, 313, 389
SfuI TTCGAA 1 cut(s) 21
SinI GGWCC 1 cut(s) 233
SmlI CTYRAG 1 cut(s) 220
SmoI CTYRAG 1 cut(s) 220
Sse9I AATT 2 cut(s) 339, 351
SsiI CCGC 3 cut(s) 77, 87, 291
SspMI CTAG 1 cut(s) 191
StyD4I CCNGG 2 cut(s) 25, 69
TaaI ACNGT 1 cut(s) 142
TaiI ACGT 1 cut(s) 20
TaqI TCGA 3 cut(s) 21, 60, 407
TasI AATT 2 cut(s) 339, 351
TauI GCSGC 1 cut(s) 90
TfiI GAWTC 1 cut(s) 37
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TscAI CASTG 2 cut(s) 181, 253
TseFI GTSAC 1 cut(s) 136
TseI GCWGC 1 cut(s) 149
Tsp45I GTSAC 1 cut(s) 136
TspRI CASTG 2 cut(s) 181, 253
VpaK11BI GGWCC 1 cut(s) 233
XspI CTAG 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.