Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000739

Physical Location & Seq

Genomic Coordinates Forward (+)

17004382 .. 17006462

Gene Structure 2081 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G35900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGTTGTCATCAGCTAAGCATCAGAGAAACCATAGACTCTCTGCTACAAACAAGAACCAGACTCTCACCAAAGTTTCTTCCATTTCATCCTCATCACCATCGTCTTCTTCTTCATCATCATCAACCTCATCATCATCTCCTTTACCTTCTCAAGACTCTCAAGCCCAGAAGAGATCTCTTGTCACCATGGAAGAAGTTTGGAATGACATCAACCTTGCTTCCATCCACCACCTAAACCGACACAGCCCTCATCCACAACACAACCACGAGCCAAGGTTCAGGGGCCAAAACCACCACAACCAAAACCCTAACTCAATCTTCCAAGATTTTCTCAAAGGATCTTTGAACCAGGAACCAGCACCCACAAGCCAGACCACGGGTTCTGCGCCTAATGGCGATTCCACCACGGTCACTGTTCTTTACAGCTCTCCTTTTCCACCTCCTGCAACTGTTCTGAGCTTGAATTCCGGCGCTGGCTTCGAGTTTCTCGATAACCAAGATCCTCTTGTTACCTCAAACTCTAATCTTCATACCCACCATCACCTCTCAAACGCTCATGCCTTCAACACCTCTTTCGAGGCTCTGGTTCCATCCAGTTCTTTTGGTAAGAAAAGAGGCCAAGATTCCAATGAAGGTTCAGGGAATAGAAGACATAAGCGTATGATCAAGAACAGAGAATCTGCAGCTCGTTCCCGCGCTAGGAAACAGGCTTATACAAACGAGTTAGAACTTGAAGTTGCTCACTTGCAGGCAGAAAATGCAAGACTCAAGAGACAACAAGATCAGTTAAAAATGGCTGCAGCAATTCAGCAACCCAAAAAGAACACACTTCAACGGTCTTCCACAGCTCCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009911 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

285

Amino Acids

31.38

Weight (kDa)

10.19

Isoelectric Point (pI)

66.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	216 - 239	4.3e-06	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35900 AT4G35900
fragaria_vesca	FvH4_1g11270 FvH4_1g11270 FvH4_2g38080 FvH4_2g38080
malus_domestica	MD02G1125100.v1.1 MD15G1008300.v1.1 MD15G1240800.v1.1
prunus_persica	Prupe.1G361100_v2.0.a1 Prupe.7G173300_v2.0.a1
pyrus_communis	pycom02g09770 pycom08g00780 pycom15g00670 pycom15g21240
rosa_chinensis	RchiOBHm_Chr2g0098731 RchiOBHm_Chr5g0020811 RchiOBHm_Chr5g0069801 RchiOBHm_Chr6g0303481
rosa_laevigata	RLG00000001084 RLG00000001969 RLG00000004672 RLG00000011081 RLG00000015050 RLG00000015656 RLG00000016824 RLG00000024869 RLG00000030190 RLG00000033969 RLG00000035356
rosa_multiflora	Rmu_sc0002776.1_g000024 Rmu_ssc0000114.1_g000047
rosa_roxburghii	Rroxscaffold_2G00107580 Rroxscaffold_2G00143780 Rroxscaffold_7G00164710 Rroxscaffold_7G00172730
rosa_rugosa	Rorug02G0074200 Rorug06G0321600 Rorug06G0321700
rosa_samantha	Rh1AG062500 Rh1BG080000 Rh1DG103800 Rh2AG122100 Rh2BG125600 Rh2CG116700 Rh2CG126700 Rh2CG345200 Rh2DG127700 Rh3DG072100 Rh5CG499500 Rh6AG436100 Rh6BG117000 Rh6BG117100 Rh6BG117200 Rh6BG467400 Rh6CG115500 Rh6CG115600 Rh6CG198000 Rh6CG448100 Rh6DG104000 Rh6DG434700 Rh7AG017700 Rh7AG193200 Rh7AG263200 Rh7BG017300 Rh7BG449800 Rh7DG018000 Rh7DG269900
rosa_wichuraiana	Rw0G004200 Rw5G015480 Rw6G037740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	696
AciI	CCGC	1 cut(s)	694
AclWI	GGATC	2 cut(s)	346, 494
AcsI	RAATTY	1 cut(s)	463
AfiI	CCNNNNNNNGG	2 cut(s)	376, 699
AgsI	TTSAA	5 cut(s)	346, 463, 565, 734, 833
AjnI	CCWGG	1 cut(s)	348
AluBI	AGCT	5 cut(s)	14, 426, 459, 686, 848
AluI	AGCT	5 cut(s)	14, 426, 459, 686, 848
Alw26I	GTCTC	1 cut(s)	766
AlwI	GGATC	2 cut(s)	346, 494
AoxI	GGCC	2 cut(s)	283, 616
ApeKI	GCWGC	3 cut(s)	683, 797, 800
ApoI	RAATTY	1 cut(s)	463
AspLEI	GCGC	3 cut(s)	388, 473, 698
AspS9I	GGNCC	1 cut(s)	283
AsuHPI	GGTGA	4 cut(s)	58, 87, 175, 533
BauI	CACGAG	1 cut(s)	266
BbsI	GAAGAC	3 cut(s)	96, 655, 831
BbvI	GCAGC	3 cut(s)	695, 784, 812
BccI	CCATC	4 cut(s)	106, 230, 546, 598
BciT130I	CCWGG	1 cut(s)	350
BclI	TGATCA	1 cut(s)	663
BcoDI	GTCTC	1 cut(s)	766
BfaI	CTAG	1 cut(s)	699
BfmI	CTRYAG	2 cut(s)	681, 798
BfoI	RGCGCY	1 cut(s)	474
BglII	AGATCT	1 cut(s)	173
BisI	GCNGC	3 cut(s)	684, 798, 801
BlpI	GCTNAGC	1 cut(s)	15
BlsI	GCNGC	3 cut(s)	685, 799, 802
Bme1390I	CCNGG	1 cut(s)	350
BmgT120I	GGNCC	1 cut(s)	283
BmiI	GGNNCC	3 cut(s)	284, 354, 588
BmrFI	CCNGG	1 cut(s)	350
BmsI	GCATC	1 cut(s)	28
BpiI	GAAGAC	3 cut(s)	96, 655, 831
Bpu1102I	GCTNAGC	1 cut(s)	15
BpuEI	CTTGAG	3 cut(s)	135, 144, 752
BsaJI	CCNNGG	4 cut(s)	186, 272, 375, 405
Bsc4I	CCNNNNNNNGG	2 cut(s)	376, 699
Bse1I	ACTGG	1 cut(s)	594
BseBI	CCWGG	1 cut(s)	350
BseDI	CCNNGG	4 cut(s)	186, 272, 375, 405
BseGI	GGATG	4 cut(s)	86, 222, 250, 590
BseLI	CCNNNNNNNGG	2 cut(s)	376, 699
BseMII	CTCAG	1 cut(s)	446
BseNI	ACTGG	1 cut(s)	594
BseXI	GCAGC	3 cut(s)	695, 784, 812
Bsh1236I	CGCG	1 cut(s)	696
BshFI	GGCC	2 cut(s)	285, 618
BsiSI	CCGG	1 cut(s)	468
BslI	CCNNNNNNNGG	2 cut(s)	376, 699
BsmAI	GTCTC	1 cut(s)	766
BsnI	GGCC	2 cut(s)	285, 618
Bsp143I	GATC	5 cut(s)	173, 338, 499, 663, 781
Bsp1720I	GCTNAGC	1 cut(s)	15
Bsp19I	CCATGG	1 cut(s)	186
BspACI	CCGC	1 cut(s)	694
BspANI	GGCC	2 cut(s)	285, 618
BspCNI	CTCAG	1 cut(s)	447
BspFNI	CGCG	1 cut(s)	696
BspLI	GGNNCC	3 cut(s)	284, 354, 588
BspMAI	CTGCAG	2 cut(s)	685, 802
BspPI	GGATC	2 cut(s)	346, 494
BsrI	ACTGG	1 cut(s)	594
BssECI	CCNNGG	4 cut(s)	186, 272, 375, 405
BssMI	GATC	5 cut(s)	173, 338, 499, 663, 781
BssSI	CACGAG	1 cut(s)	266
BssT1I	CCWWGG	2 cut(s)	186, 272
Bst2BI	CACGAG	1 cut(s)	266
Bst2UI	CCWGG	1 cut(s)	350
Bst4CI	ACNGT	4 cut(s)	409, 415, 451, 837
Bst6I	CTCTTC	1 cut(s)	164
BstAPI	GCANNNNNTGC	1 cut(s)	758
BstC8I	GCNNGC	2 cut(s)	475, 750
BstDEI	CTNAG	2 cut(s)	15, 455
BstDSI	CCRYGG	3 cut(s)	186, 375, 405
BstF5I	GGATG	4 cut(s)	86, 222, 250, 590
BstFNI	CGCG	1 cut(s)	696
BstH2I	RGCGCY	1 cut(s)	474
BstHHI	GCGC	3 cut(s)	388, 473, 698
BstKTI	GATC	5 cut(s)	176, 341, 502, 666, 784
BstMAI	GTCTC	1 cut(s)	766
BstMBI	GATC	5 cut(s)	173, 338, 499, 663, 781
BstMWI	GCNNNNNNNGC	1 cut(s)	758
BstNI	CCWGG	1 cut(s)	350
BstSCI	CCNGG	1 cut(s)	348
BstSFI	CTRYAG	2 cut(s)	681, 798
BstUI	CGCG	1 cut(s)	696
BstV1I	GCAGC	3 cut(s)	695, 784, 812
BstV2I	GAAGAC	3 cut(s)	96, 655, 831
BstX2I	RGATCY	3 cut(s)	173, 338, 499
BstYI	RGATCY	3 cut(s)	173, 338, 499
BsuRI	GGCC	2 cut(s)	285, 618
BtgI	CCRYGG	3 cut(s)	186, 375, 405
BtsCI	GGATG	4 cut(s)	86, 222, 250, 590
BtsIMutI	CAGTG	1 cut(s)	411
Cac8I	GCNNGC	2 cut(s)	475, 750
CfoI	GCGC	3 cut(s)	388, 473, 698
Cfr13I	GGNCC	1 cut(s)	283
CviAII	CATG	2 cut(s)	187, 557
DdeI	CTNAG	2 cut(s)	15, 455
DpnI	GATC	5 cut(s)	175, 340, 501, 665, 783
DpnII	GATC	5 cut(s)	173, 338, 499, 663, 781
Eam1104I	CTCTTC	1 cut(s)	164
EarI	CTCTTC	1 cut(s)	164
Eco130I	CCWWGG	2 cut(s)	186, 272
EcoRI	GAATTC	1 cut(s)	463
EcoRII	CCWGG	1 cut(s)	348
EcoT14I	CCWWGG	2 cut(s)	186, 272
ErhI	CCWWGG	2 cut(s)	186, 272
FaeI	CATG	2 cut(s)	190, 560
FaiI	YATR	7 cut(s)	33, 188, 531, 558, 654, 662, 714
FalI	AAGNNNNNCTT	2 cut(s)	489, 521
FatI	CATG	2 cut(s)	186, 556
FauI	CCCGC	1 cut(s)	701
FbaI	TGATCA	1 cut(s)	663
Fnu4HI	GCNGC	3 cut(s)	684, 798, 801
FokI	GGATG	4 cut(s)	73, 209, 237, 577
Fsp4HI	GCNGC	3 cut(s)	684, 798, 801
FspBI	CTAG	1 cut(s)	699
GlaI	GCGC	3 cut(s)	387, 472, 697
GluI	GCNGC	3 cut(s)	684, 798, 801
HaeII	RGCGCY	1 cut(s)	474
HaeIII	GGCC	2 cut(s)	285, 618
HapII	CCGG	1 cut(s)	468
HhaI	GCGC	3 cut(s)	388, 473, 698
Hin1II	CATG	2 cut(s)	190, 560
Hin6I	GCGC	3 cut(s)	386, 471, 696
HinP1I	GCGC	3 cut(s)	386, 471, 696
HinfI	GANTC	7 cut(s)	36, 61, 155, 398, 623, 677, 765
HpaII	CCGG	1 cut(s)	468
HphI	GGTGA	4 cut(s)	58, 87, 175, 533
Hpy188I	TCNGA	2 cut(s)	24, 456
Hpy188III	TCNNGA	4 cut(s)	152, 488, 667, 769
HpyAV	CCTTC	3 cut(s)	156, 571, 626
HpyCH4III	ACNGT	4 cut(s)	409, 415, 451, 837
HpyCH4V	TGCA	5 cut(s)	446, 683, 748, 761, 800
HpyF10VI	GCNNNNNNNGC	1 cut(s)	758
HpyF3I	CTNAG	2 cut(s)	15, 455
Hsp92II	CATG	2 cut(s)	190, 560
HspAI	GCGC	3 cut(s)	386, 471, 696
Ksp22I	TGATCA	1 cut(s)	663
Kzo9I	GATC	5 cut(s)	173, 338, 499, 663, 781
LmnI	GCTCC	1 cut(s)	853
Lsp1109I	GCAGC	3 cut(s)	695, 784, 812
LweI	GCATC	1 cut(s)	28
MaeI	CTAG	1 cut(s)	699
MaeIII	GTNAC	3 cut(s)	181, 409, 508
MalI	GATC	5 cut(s)	175, 340, 501, 665, 783
MboI	GATC	5 cut(s)	173, 338, 499, 663, 781
MflI	RGATCY	3 cut(s)	173, 338, 499
MluCI	AATT	2 cut(s)	463, 804
MlyI	GAGTC	4 cut(s)	30, 55, 149, 759
MseI	TTAA	1 cut(s)	788
MspI	CCGG	1 cut(s)	468
MspR9I	CCNGG	1 cut(s)	350
MvaI	CCWGG	1 cut(s)	350
MvnI	CGCG	1 cut(s)	696
MwoI	GCNNNNNNNGC	1 cut(s)	758
NcoI	CCATGG	1 cut(s)	186
NdeII	GATC	5 cut(s)	173, 338, 499, 663, 781
NlaIII	CATG	2 cut(s)	190, 560
NlaIV	GGNNCC	3 cut(s)	284, 354, 588
NmuCI	GTSAC	2 cut(s)	181, 409
PcsI	WCGNNNNNNNCGW	1 cut(s)	486
PfeI	GAWTC	3 cut(s)	398, 623, 677
PkrI	GCNGC	3 cut(s)	685, 799, 802
PleI	GAGTC	4 cut(s)	30, 55, 149, 759
PpsI	GAGTC	4 cut(s)	30, 55, 149, 759
Psp6I	CCWGG	1 cut(s)	348
PspGI	CCWGG	1 cut(s)	348
PspN4I	GGNNCC	3 cut(s)	284, 354, 588
PspPI	GGNCC	1 cut(s)	283
PstI	CTGCAG	2 cut(s)	685, 802
PsuI	RGATCY	3 cut(s)	173, 338, 499
SaqAI	TTAA	1 cut(s)	788
SatI	GCNGC	3 cut(s)	684, 798, 801
Sau3AI	GATC	5 cut(s)	173, 338, 499, 663, 781
Sau96I	GGNCC	1 cut(s)	283
SchI	GAGTC	4 cut(s)	30, 55, 149, 759
ScrFI	CCNGG	1 cut(s)	350
SfaNI	GCATC	1 cut(s)	28
SfcI	CTRYAG	2 cut(s)	681, 798
SmlI	CTYRAG	3 cut(s)	150, 159, 767
SmoI	CTYRAG	3 cut(s)	150, 159, 767
Sse9I	AATT	2 cut(s)	463, 804
SsiI	CCGC	1 cut(s)	694
SspMI	CTAG	1 cut(s)	699
StyD4I	CCNGG	1 cut(s)	348
StyI	CCWWGG	2 cut(s)	186, 272
TaaI	ACNGT	4 cut(s)	409, 415, 451, 837
TaqI	TCGA	3 cut(s)	480, 489, 576
TasI	AATT	2 cut(s)	463, 804
TfiI	GAWTC	3 cut(s)	398, 623, 677
Tru1I	TTAA	1 cut(s)	788
Tru9I	TTAA	1 cut(s)	788
TscAI	CASTG	1 cut(s)	418
TseFI	GTSAC	2 cut(s)	181, 409
TseI	GCWGC	3 cut(s)	683, 797, 800
Tsp45I	GTSAC	2 cut(s)	181, 409
TspDTI	ATGAA	4 cut(s)	75, 102, 518, 645
TspRI	CASTG	1 cut(s)	418
XapI	RAATTY	1 cut(s)	463
XspI	CTAG	1 cut(s)	699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.