Rh2AG122100
BZIP Family

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000739
Physical Location & Seq
Reverse (-)
11056969 .. 11058172
1204 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG122100.1

Sequence Viewer

Length: 570 bp
ATGGAGGAGGTCTGGAAAGACATCAACCTCGCCTCGCTTTCGGACTCCAACAACTCACTCAACAACAATCCCAACTTCAGAAACATGACCCTCCAGGACTTTCTGGCAAGGCCCTTTGGCAATGTGGTCTCTCCCAGACCCGATCACCACCACCATCACCACACCACTCGCAACTCTCCTCCTCCTCCTCAAGCTGTGATGCCGAGCCCAGCCACTGTTCTGAGCTTGAATCATTTGAGCTCGGACCAGTTTCAGCTCTTCTGTTTAGAGAATCTCAACACTAGGCCTATTGTTAACATCAACCACCCCAATAGTAGTACTGTTTCTGATAACTCTTTCAGTGGTGCTTACCCATTTGAGGGTCTCGGAAACCAATCTTCTCCTTCTTCTGGGTTGGTTATGCCGTCGGGTTTTGGGGTCGGGAAGAAGAGGTTACCGGAATCTGATCGCAGCAACTTCGGAGGAGGAGATCGGAGACACAAGCGGATGATCAAGAATAGAGAATCTGCTGCAAGATCCAGAGCAAGGAAGCAGGAATATTGCTGTCCCTATAATTCTCAAAAGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1

Protein Analysis

189

Amino Acids

21.14

Weight (kDa)

9.51

Isoelectric Point (pI)

69.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_1 PF00170 158 - 181 1.7e-07 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 484
AclWI GGATC 1 cut(s) 510
AcuI CTGAAG 1 cut(s) 61
AfaI GTAC 2 cut(s) 319, 566
AfiI CCNNNNNNNGG 4 cut(s) 358, 359, 389, 525
AgsI TTSAA 1 cut(s) 229
AjnI CCWGG 1 cut(s) 93
AluBI AGCT 4 cut(s) 194, 225, 240, 256
AluI AGCT 4 cut(s) 194, 225, 240, 256
Alw21I GWGCWC 1 cut(s) 242
Alw26I GTCTC 3 cut(s) 133, 368, 469
AlwI GGATC 1 cut(s) 510
AlwNI CAGNNNCTG 1 cut(s) 215
AoxI GGCC 2 cut(s) 110, 284
ApeKI GCWGC 2 cut(s) 450, 509
AspS9I GGNCC 2 cut(s) 111, 244
AsuHPI GGTGA 2 cut(s) 137, 149
AvaII GGWCC 1 cut(s) 244
BanII GRGCYC 2 cut(s) 209, 242
Bbv12I GWGCWC 1 cut(s) 242
BbvI GCAGC 2 cut(s) 462, 496
BccI CCATC 1 cut(s) 162
BceAI ACGGC 1 cut(s) 388
BcgI CGANNNNNNTGC 2 cut(s) 439, 473
BciT130I CCWGG 1 cut(s) 95
BclI TGATCA 1 cut(s) 489
BcoDI GTCTC 3 cut(s) 133, 368, 469
BfaI CTAG 1 cut(s) 282
BisI GCNGC 2 cut(s) 451, 510
BlsI GCNGC 2 cut(s) 452, 511
BmcAI AGTACT 2 cut(s) 319, 566
Bme1390I CCNGG 1 cut(s) 95
Bme18I GGWCC 1 cut(s) 244
BmgT120I GGNCC 2 cut(s) 111, 244
BmrFI CCNGG 1 cut(s) 95
BmsI GCATC 1 cut(s) 189
BpmI CTGGAG 1 cut(s) 77
BpuEI CTTGAG 1 cut(s) 174
BsaI GGTCTC 2 cut(s) 133, 368
BsaWI WCCGGW 1 cut(s) 436
Bsc4I CCNNNNNNNGG 4 cut(s) 358, 359, 389, 525
Bse1I ACTGG 1 cut(s) 247
Bse3DI GCAATG 1 cut(s) 127
BseBI CCWGG 1 cut(s) 95
BseGI GGATG 1 cut(s) 492
BseLI CCNNNNNNNGG 4 cut(s) 358, 359, 389, 525
BseMI GCAATG 1 cut(s) 127
BseMII CTCAG 1 cut(s) 212
BseNI ACTGG 1 cut(s) 247
BseRI GAGGAG 7 cut(s) 20, 168, 171, 174, 177, 477, 480
BseXI GCAGC 2 cut(s) 462, 496
BseYI CCCAGC 1 cut(s) 208
BshFI GGCC 2 cut(s) 112, 286
BsiHKAI GWGCWC 1 cut(s) 242
BsiSI CCGG 1 cut(s) 437
BslFI GGGAC 1 cut(s) 531
BslI CCNNNNNNNGG 4 cut(s) 358, 359, 389, 525
BsmAI GTCTC 3 cut(s) 133, 368, 469
BsmFI GGGAC 1 cut(s) 531
BsnI GGCC 2 cut(s) 112, 286
Bso31I GGTCTC 2 cut(s) 133, 368
Bsp1286I GDGCHC 2 cut(s) 209, 242
Bsp143I GATC 5 cut(s) 142, 445, 469, 489, 515
BspACI CCGC 1 cut(s) 484
BspANI GGCC 2 cut(s) 112, 286
BspCNI CTCAG 1 cut(s) 213
BspPI GGATC 1 cut(s) 510
BspQI GCTCTTC 1 cut(s) 263
BspTNI GGTCTC 2 cut(s) 133, 368
BsrDI GCAATG 1 cut(s) 127
BsrI ACTGG 1 cut(s) 247
BssMI GATC 5 cut(s) 142, 445, 469, 489, 515
Bst2UI CCWGG 1 cut(s) 95
Bst4CI ACNGT 2 cut(s) 217, 322
Bst6I CTCTTC 2 cut(s) 263, 422
BstDEI CTNAG 1 cut(s) 221
BstEII GGTNACC 1 cut(s) 432
BstF5I GGATG 1 cut(s) 492
BstKTI GATC 5 cut(s) 145, 448, 472, 492, 518
BstMAI GTCTC 3 cut(s) 133, 368, 469
BstMBI GATC 5 cut(s) 142, 445, 469, 489, 515
BstNI CCWGG 1 cut(s) 95
BstPI GGTNACC 1 cut(s) 432
BstSCI CCNGG 1 cut(s) 93
BstV1I GCAGC 2 cut(s) 462, 496
BstX2I RGATCY 1 cut(s) 515
BstYI RGATCY 1 cut(s) 515
BsuRI GGCC 2 cut(s) 112, 286
BtsCI GGATG 1 cut(s) 492
BtsIMutI CAGTG 2 cut(s) 213, 346
CaiI CAGNNNCTG 1 cut(s) 215
Cfr13I GGNCC 2 cut(s) 111, 244
Csp6I GTAC 2 cut(s) 318, 565
CviAII CATG 1 cut(s) 85
CviJI RGCY 8 cut(s) 112, 194, 207, 212, 225, 240, 256, 286
CviKI_1 RGCY 8 cut(s) 112, 194, 207, 212, 225, 240, 256, 286
CviQI GTAC 2 cut(s) 318, 565
DdeI CTNAG 1 cut(s) 221
DpnI GATC 5 cut(s) 144, 447, 471, 491, 517
DpnII GATC 5 cut(s) 142, 445, 469, 489, 515
Eam1104I CTCTTC 2 cut(s) 263, 422
EarI CTCTTC 2 cut(s) 263, 422
Ecl136II GAGCTC 1 cut(s) 240
Eco147I AGGCCT 1 cut(s) 286
Eco24I GRGCYC 2 cut(s) 209, 242
Eco31I GGTCTC 2 cut(s) 133, 368
Eco47I GGWCC 1 cut(s) 244
Eco53kI GAGCTC 1 cut(s) 240
Eco57I CTGAAG 1 cut(s) 61
Eco91I GGTNACC 1 cut(s) 432
EcoICRI GAGCTC 1 cut(s) 240
EcoO109I RGGNCCY 1 cut(s) 111
EcoO65I GGTNACC 1 cut(s) 432
EcoRII CCWGG 1 cut(s) 93
EcoT38I GRGCYC 2 cut(s) 209, 242
FaeI CATG 1 cut(s) 88
FaiI YATR 3 cut(s) 86, 401, 552
FaqI GGGAC 1 cut(s) 531
FatI CATG 1 cut(s) 84
FbaI TGATCA 1 cut(s) 489
Fnu4HI GCNGC 2 cut(s) 451, 510
FokI GGATG 1 cut(s) 499
FriOI GRGCYC 2 cut(s) 209, 242
Fsp4HI GCNGC 2 cut(s) 451, 510
FspBI CTAG 1 cut(s) 282
GluI GCNGC 2 cut(s) 451, 510
GsaI CCCAGC 1 cut(s) 212
GsuI CTGGAG 1 cut(s) 77
HaeIII GGCC 2 cut(s) 112, 286
HapII CCGG 1 cut(s) 437
Hin1II CATG 1 cut(s) 88
HincII GTYRAC 1 cut(s) 295
HindII GTYRAC 1 cut(s) 295
HinfI GANTC 5 cut(s) 44, 229, 271, 440, 503
HpaI GTTAAC 1 cut(s) 295
HpaII CCGG 1 cut(s) 437
HphI GGTGA 2 cut(s) 137, 149
Hpy166II GTNNAC 1 cut(s) 295
Hpy188I TCNGA 9 cut(s) 43, 80, 222, 244, 328, 368, 445, 461, 474
Hpy188III TCNNGA 4 cut(s) 13, 421, 493, 519
Hpy8I GTNNAC 1 cut(s) 295
Hpy99I CGWCG 1 cut(s) 409
HpyAV CCTTC 1 cut(s) 393
HpyCH4III ACNGT 2 cut(s) 217, 322
HpyCH4V TGCA 1 cut(s) 512
HpyF3I CTNAG 1 cut(s) 221
Hsp92II CATG 1 cut(s) 88
Ksp22I TGATCA 1 cut(s) 489
KspAI GTTAAC 1 cut(s) 295
Kzo9I GATC 5 cut(s) 142, 445, 469, 489, 515
LguI GCTCTTC 1 cut(s) 263
Lsp1109I GCAGC 2 cut(s) 462, 496
LweI GCATC 1 cut(s) 189
MaeI CTAG 1 cut(s) 282
MaeIII GTNAC 1 cut(s) 432
MalI GATC 5 cut(s) 144, 447, 471, 491, 517
MboI GATC 5 cut(s) 142, 445, 469, 489, 515
MboII GAAGA 5 cut(s) 250, 369, 378, 436, 439
MflI RGATCY 1 cut(s) 515
MhlI GDGCHC 2 cut(s) 209, 242
MluCI AATT 1 cut(s) 553
MlyI GAGTC 1 cut(s) 38
MmeI TCCRAC 1 cut(s) 72
MseI TTAA 1 cut(s) 294
MspI CCGG 1 cut(s) 437
MspR9I CCNGG 1 cut(s) 95
MvaI CCWGG 1 cut(s) 95
NdeII GATC 5 cut(s) 142, 445, 469, 489, 515
NlaIII CATG 1 cut(s) 88
NmeAIII GCCGAG 1 cut(s) 228
PceI AGGCCT 1 cut(s) 286
PciSI GCTCTTC 1 cut(s) 263
PfeI GAWTC 4 cut(s) 229, 271, 440, 503
PfoI TCCNGGA 1 cut(s) 93
PkrI GCNGC 2 cut(s) 452, 511
PleI GAGTC 1 cut(s) 38
PpsI GAGTC 1 cut(s) 38
Psp124BI GAGCTC 1 cut(s) 242
Psp6I CCWGG 1 cut(s) 93
PspEI GGTNACC 1 cut(s) 432
PspFI CCCAGC 1 cut(s) 208
PspGI CCWGG 1 cut(s) 93
PspPI GGNCC 2 cut(s) 111, 244
PstNI CAGNNNCTG 1 cut(s) 215
PsuI RGATCY 1 cut(s) 515
RsaI GTAC 2 cut(s) 319, 566
RsaNI GTAC 2 cut(s) 318, 565
SacI GAGCTC 1 cut(s) 242
SapI GCTCTTC 1 cut(s) 263
SaqAI TTAA 1 cut(s) 294
SatI GCNGC 2 cut(s) 451, 510
Sau3AI GATC 5 cut(s) 142, 445, 469, 489, 515
Sau96I GGNCC 2 cut(s) 111, 244
ScaI AGTACT 2 cut(s) 319, 566
SchI GAGTC 1 cut(s) 38
ScrFI CCNGG 1 cut(s) 95
SduI GDGCHC 2 cut(s) 209, 242
SetI ASST 7 cut(s) 12, 30, 196, 227, 242, 258, 434
SfaNI GCATC 1 cut(s) 189
SinI GGWCC 1 cut(s) 244
SmlI CTYRAG 1 cut(s) 189
SmoI CTYRAG 1 cut(s) 189
Sse9I AATT 1 cut(s) 553
SseBI AGGCCT 1 cut(s) 286
SsiI CCGC 1 cut(s) 484
SspI AATATT 1 cut(s) 539
SspMI CTAG 1 cut(s) 282
SstI GAGCTC 1 cut(s) 242
StuI AGGCCT 1 cut(s) 286
StyD4I CCNGG 1 cut(s) 93
TaaI ACNGT 2 cut(s) 217, 322
TasI AATT 1 cut(s) 553
TatI WGTACW 2 cut(s) 317, 564
TfiI GAWTC 4 cut(s) 229, 271, 440, 503
Tru1I TTAA 1 cut(s) 294
Tru9I TTAA 1 cut(s) 294
TscAI CASTG 2 cut(s) 220, 346
TseI GCWGC 2 cut(s) 450, 509
TspRI CASTG 2 cut(s) 220, 346
VpaK11BI GGWCC 1 cut(s) 244
XspI CTAG 1 cut(s) 282
ZrmI AGTACT 2 cut(s) 319, 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.