Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000739

Physical Location & Seq

Genomic Coordinates Forward (+)

19236175 .. 19237977

Gene Structure 1803 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G015480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGGCTTTGAAGGCGGATCTAGTGCAACACCTCTGAAGCAAGGTGGTTGGGCTGTTCTAATACTAGGGATGTCAATGGCGAATTGGGAGGGACTGGACTTTGTTCTGCTTTGTTTCCAAGCAGCGACGCAACGTTTGGCGGACTACATCGATTTGGAATTTGGGTGGACTCAAACCGATTTGTGTTCAAGTTTGCTTGGGTTTCAGCTTTTGGGGCTCATGGGTGGTCGAGCATTTGCCAGAGTTTCCAATTCGATAAGAGAAGAAGAGATCACTGACATAAAGGAAACACACAGCGGAAAGCATCTTCATGGACCTCATTATTGTGATGATCCCGATGTTTGTGCAGCGCATCATACTGGTTGTCCCCCCGATGGATCATGGATGTGTCAACAGACCCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

134

Amino Acids

14.62

Weight (kDa)

4.83

Isoelectric Point (pI)

30.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35900 AT4G35900
fragaria_vesca	FvH4_1g11270 FvH4_1g11270 FvH4_2g38080 FvH4_2g38080
malus_domestica	MD02G1125100.v1.1 MD15G1008300.v1.1 MD15G1240800.v1.1
prunus_persica	Prupe.1G361100_v2.0.a1 Prupe.7G173300_v2.0.a1
pyrus_communis	pycom02g09770 pycom08g00780 pycom15g00670 pycom15g21240
rosa_chinensis	RchiOBHm_Chr2g0098731 RchiOBHm_Chr5g0020811 RchiOBHm_Chr5g0069801 RchiOBHm_Chr6g0303481
rosa_laevigata	RLG00000001084 RLG00000001969 RLG00000004672 RLG00000011081 RLG00000015050 RLG00000015656 RLG00000016824 RLG00000024869 RLG00000030190 RLG00000033969 RLG00000035356
rosa_multiflora	Rmu_sc0002776.1_g000024 Rmu_ssc0000114.1_g000047
rosa_roxburghii	Rroxscaffold_2G00107580 Rroxscaffold_2G00143780 Rroxscaffold_7G00164710 Rroxscaffold_7G00172730
rosa_rugosa	Rorug02G0074200 Rorug06G0321600 Rorug06G0321700
rosa_samantha	Rh1AG062500 Rh1BG080000 Rh1DG103800 Rh2AG122100 Rh2BG125600 Rh2CG116700 Rh2CG126700 Rh2CG345200 Rh2DG127700 Rh3DG072100 Rh5CG499500 Rh6AG436100 Rh6BG117000 Rh6BG117100 Rh6BG117200 Rh6BG467400 Rh6CG115500 Rh6CG115600 Rh6CG198000 Rh6CG448100 Rh6DG104000 Rh6DG434700 Rh7AG017700 Rh7AG193200 Rh7AG263200 Rh7BG017300 Rh7BG449800 Rh7DG018000 Rh7DG269900
rosa_wichuraiana	Rw0G004200 Rw5G015480 Rw6G037740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	15, 140, 297
AclI	AACGTT	1 cut(s)	133
AclWI	GGATC	3 cut(s)	25, 326, 385
AcsI	RAATTY	1 cut(s)	158
AcuI	CTGAAG	1 cut(s)	56
AfiI	CCNNNNNNNGG	1 cut(s)	374
AgsI	TTSAA	2 cut(s)	11, 189
AluBI	AGCT	1 cut(s)	208
AluI	AGCT	1 cut(s)	208
AlwI	GGATC	3 cut(s)	25, 326, 385
ApeKI	GCWGC	2 cut(s)	122, 347
ApoI	RAATTY	1 cut(s)	158
ArsI	GACNNNNNNTTYG	2 cut(s)	118, 150
AspLEI	GCGC	1 cut(s)	352
AspS9I	GGNCC	1 cut(s)	314
AvaII	GGWCC	1 cut(s)	314
BanII	GRGCYC	1 cut(s)	219
BbvI	GCAGC	2 cut(s)	134, 359
BccI	CCATC	1 cut(s)	368
BcgI	CGANNNNNNTGC	2 cut(s)	326, 360
BfaI	CTAG	2 cut(s)	21, 65
BisI	GCNGC	2 cut(s)	123, 348
BlsI	GCNGC	2 cut(s)	124, 349
Bme18I	GGWCC	1 cut(s)	314
BmgT120I	GGNCC	1 cut(s)	314
BmsI	GCATC	2 cut(s)	313, 361
Bsa29I	ATCGAT	1 cut(s)	150
Bsc4I	CCNNNNNNNGG	1 cut(s)	374
Bse1I	ACTGG	2 cut(s)	99, 364
BseCI	ATCGAT	1 cut(s)	150
BseGI	GGATG	2 cut(s)	75, 390
BseLI	CCNNNNNNNGG	1 cut(s)	374
BseNI	ACTGG	2 cut(s)	99, 364
BseXI	GCAGC	2 cut(s)	134, 359
BsgI	GTGCAG	1 cut(s)	366
BshVI	ATCGAT	1 cut(s)	150
BslFI	GGGAC	2 cut(s)	105, 351
BslI	CCNNNNNNNGG	1 cut(s)	374
BsmFI	GGGAC	2 cut(s)	105, 351
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp143I	GATC	4 cut(s)	17, 270, 331, 377
BspACI	CCGC	3 cut(s)	15, 140, 297
BspDI	ATCGAT	1 cut(s)	150
BspPI	GGATC	3 cut(s)	25, 326, 385
BsrI	ACTGG	2 cut(s)	99, 364
BssMI	GATC	4 cut(s)	17, 270, 331, 377
Bst6I	CTCTTC	1 cut(s)	261
BstF5I	GGATG	2 cut(s)	75, 390
BstHHI	GCGC	1 cut(s)	352
BstKTI	GATC	4 cut(s)	20, 273, 334, 380
BstMBI	GATC	4 cut(s)	17, 270, 331, 377
BstMWI	GCNNNNNNNGC	2 cut(s)	12, 214
BstV1I	GCAGC	2 cut(s)	134, 359
BstX2I	RGATCY	1 cut(s)	17
BstYI	RGATCY	1 cut(s)	17
Bsu15I	ATCGAT	1 cut(s)	150
BsuTUI	ATCGAT	1 cut(s)	150
BtsCI	GGATG	2 cut(s)	75, 390
BtsIMutI	CAGTG	1 cut(s)	273
CfoI	GCGC	1 cut(s)	352
Cfr13I	GGNCC	1 cut(s)	314
ClaI	ATCGAT	1 cut(s)	150
CseI	GACGC	1 cut(s)	136
CviAII	CATG	3 cut(s)	220, 311, 381
CviJI	RGCY	4 cut(s)	6, 53, 208, 217
CviKI_1	RGCY	4 cut(s)	6, 53, 208, 217
DpnI	GATC	4 cut(s)	19, 272, 333, 379
DpnII	GATC	4 cut(s)	17, 270, 331, 377
Eam1104I	CTCTTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	261
EciI	GGCGGA	2 cut(s)	30, 155
Eco24I	GRGCYC	1 cut(s)	219
Eco47I	GGWCC	1 cut(s)	314
Eco57I	CTGAAG	1 cut(s)	56
EcoT38I	GRGCYC	1 cut(s)	219
FaeI	CATG	3 cut(s)	223, 314, 384
FaiI	YATR	6 cut(s)	221, 281, 312, 357, 382, 403
FaqI	GGGAC	2 cut(s)	105, 351
FatI	CATG	3 cut(s)	219, 310, 380
Fnu4HI	GCNGC	2 cut(s)	123, 348
FokI	GGATG	2 cut(s)	82, 397
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	2 cut(s)	123, 348
FspBI	CTAG	2 cut(s)	21, 65
GlaI	GCGC	1 cut(s)	351
GluI	GCNGC	2 cut(s)	123, 348
HgaI	GACGC	1 cut(s)	136
HhaI	GCGC	1 cut(s)	352
Hin1II	CATG	3 cut(s)	223, 314, 384
Hin6I	GCGC	1 cut(s)	350
HinP1I	GCGC	1 cut(s)	350
HincII	GTYRAC	1 cut(s)	392
HindII	GTYRAC	1 cut(s)	392
HinfI	GANTC	1 cut(s)	169
Hpy166II	GTNNAC	2 cut(s)	168, 392
Hpy188I	TCNGA	1 cut(s)	36
Hpy188III	TCNNGA	1 cut(s)	335
Hpy8I	GTNNAC	2 cut(s)	168, 392
Hpy99I	CGWCG	1 cut(s)	130
HpyAV	CCTTC	1 cut(s)	5
HpyCH4IV	ACGT	1 cut(s)	133
HpyCH4V	TGCA	2 cut(s)	26, 347
HpyF10VI	GCNNNNNNNGC	2 cut(s)	12, 214
HpySE526I	ACGT	1 cut(s)	133
Hsp92II	CATG	3 cut(s)	223, 314, 384
HspAI	GCGC	1 cut(s)	350
Kzo9I	GATC	4 cut(s)	17, 270, 331, 377
LpnPI	CCDG	3 cut(s)	80, 253, 345
Lsp1109I	GCAGC	2 cut(s)	134, 359
LweI	GCATC	2 cut(s)	313, 361
MaeI	CTAG	2 cut(s)	21, 65
MaeII	ACGT	1 cut(s)	133
MalI	GATC	4 cut(s)	19, 272, 333, 379
MboI	GATC	4 cut(s)	17, 270, 331, 377
MboII	GAAGA	3 cut(s)	275, 278, 299
MflI	RGATCY	1 cut(s)	17
MhlI	GDGCHC	1 cut(s)	219
MluCI	AATT	3 cut(s)	82, 158, 250
MlyI	GAGTC	1 cut(s)	163
MnlI	CCTC	3 cut(s)	42, 82, 327
MslI	CAYNNNNRTG	3 cut(s)	309, 324, 385
MspA1I	CMGCKG	1 cut(s)	297
MwoI	GCNNNNNNNGC	2 cut(s)	12, 214
NdeII	GATC	4 cut(s)	17, 270, 331, 377
NlaIII	CATG	3 cut(s)	223, 314, 384
PkrI	GCNGC	2 cut(s)	124, 349
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
Psp1406I	AACGTT	1 cut(s)	133
PspPI	GGNCC	1 cut(s)	314
PsuI	RGATCY	1 cut(s)	17
RseI	CAYNNNNRTG	3 cut(s)	309, 324, 385
SatI	GCNGC	2 cut(s)	123, 348
Sau3AI	GATC	4 cut(s)	17, 270, 331, 377
Sau96I	GGNCC	1 cut(s)	314
SchI	GAGTC	1 cut(s)	163
SduI	GDGCHC	1 cut(s)	219
SetI	ASST	5 cut(s)	34, 46, 136, 210, 319
SfaNI	GCATC	2 cut(s)	313, 361
SinI	GGWCC	1 cut(s)	314
SmiMI	CAYNNNNRTG	3 cut(s)	309, 324, 385
Sse9I	AATT	3 cut(s)	82, 158, 250
SsiI	CCGC	3 cut(s)	15, 140, 297
SspMI	CTAG	2 cut(s)	21, 65
TaiI	ACGT	1 cut(s)	136
TaqI	TCGA	3 cut(s)	150, 229, 254
TasI	AATT	3 cut(s)	82, 158, 250
TscAI	CASTG	1 cut(s)	280
TseI	GCWGC	2 cut(s)	122, 347
TspDTI	ATGAA	1 cut(s)	299
TspRI	CASTG	1 cut(s)	280
VpaK11BI	GGWCC	1 cut(s)	314
XapI	RAATTY	1 cut(s)	158
XspI	CTAG	2 cut(s)	21, 65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.