Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000739

Physical Location & Seq

Genomic Coordinates Reverse (-)

13229890 .. 13231824

Gene Structure 1935 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG115500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGTCACAATCTGTCCTGGCCTTAATGATGTCATCAGACAGCCAAAGAAAGGGTAAAACAAATTTAATGCATATGATTAACACCCGTATATGCCTAATTCTGGAGGTTAAGATGGCAGAAGAGAATGATAAAGGACCGGGAATCTGCTGCTTGTTCACGTGCAAGGAAGCAGGTCTAGTTTTCATTCTTTTATTGTTGATCTTAGATTCCACCTGTGCTTTTCTTTTGTTACTTTTATCTGAAAAGAGAGAGTTGCAACAGGCTTATACAAATGAACTGGAGAACAAAGTTTCACGTCTGGAGGAGGAAAATGAAAGGCTAAGGAAGCAAAAGACGCATTGTTGGGAATTAAGGATTTATTCCTTAAGCATCCAGAAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

127

Amino Acids

14.72

Weight (kDa)

8.23

Isoelectric Point (pI)

63.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35900 AT4G35900
fragaria_vesca	FvH4_1g11270 FvH4_1g11270 FvH4_2g38080 FvH4_2g38080
malus_domestica	MD02G1125100.v1.1 MD15G1008300.v1.1 MD15G1240800.v1.1
prunus_persica	Prupe.1G361100_v2.0.a1 Prupe.7G173300_v2.0.a1
pyrus_communis	pycom02g09770 pycom08g00780 pycom15g00670 pycom15g21240
rosa_chinensis	RchiOBHm_Chr2g0098731 RchiOBHm_Chr5g0020811 RchiOBHm_Chr5g0069801 RchiOBHm_Chr6g0303481
rosa_laevigata	RLG00000001084 RLG00000001969 RLG00000004672 RLG00000011081 RLG00000015050 RLG00000015656 RLG00000016824 RLG00000024869 RLG00000030190 RLG00000033969 RLG00000035356
rosa_multiflora	Rmu_sc0002776.1_g000024 Rmu_ssc0000114.1_g000047
rosa_roxburghii	Rroxscaffold_2G00107580 Rroxscaffold_2G00143780 Rroxscaffold_7G00164710 Rroxscaffold_7G00172730
rosa_rugosa	Rorug02G0074200 Rorug06G0321600 Rorug06G0321700
rosa_samantha	Rh1AG062500 Rh1BG080000 Rh1DG103800 Rh2AG122100 Rh2BG125600 Rh2CG116700 Rh2CG126700 Rh2CG345200 Rh2DG127700 Rh3DG072100 Rh5CG499500 Rh6AG436100 Rh6BG117000 Rh6BG117100 Rh6BG117200 Rh6BG467400 Rh6CG115500 Rh6CG115600 Rh6CG198000 Rh6CG448100 Rh6DG104000 Rh6DG434700 Rh7AG017700 Rh7AG193200 Rh7AG263200 Rh7BG017300 Rh7BG449800 Rh7DG018000 Rh7DG269900
rosa_wichuraiana	Rw0G004200 Rw5G015480 Rw6G037740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	161
AcsI	RAATTY	1 cut(s)	61
AcvI	CACGTG	1 cut(s)	159
AfiI	CCNNNNNNNGG	2 cut(s)	49, 100
AflII	CTTAAG	1 cut(s)	364
AjiI	CACGTC	1 cut(s)	296
AjnI	CCWGG	1 cut(s)	15
AoxI	GGCC	1 cut(s)	18
ApeKI	GCWGC	1 cut(s)	147
ApoI	RAATTY	1 cut(s)	61
AspS9I	GGNCC	1 cut(s)	134
AsuC2I	CCSGG	1 cut(s)	138
AvaII	GGWCC	1 cut(s)	134
BbrPI	CACGTG	1 cut(s)	159
BbvI	GCAGC	1 cut(s)	134
BccI	CCATC	1 cut(s)	106
BciT130I	CCWGG	1 cut(s)	17
BcnI	CCSGG	1 cut(s)	138
BfaI	CTAG	1 cut(s)	176
BfrI	CTTAAG	1 cut(s)	364
BfuAI	ACCTGC	1 cut(s)	161
BisI	GCNGC	1 cut(s)	148
BlsI	GCNGC	1 cut(s)	149
Bme1390I	CCNGG	2 cut(s)	17, 138
Bme18I	GGWCC	1 cut(s)	134
BmgBI	CACGTC	1 cut(s)	296
BmgT120I	GGNCC	1 cut(s)	134
BmrFI	CCNGG	2 cut(s)	17, 138
BmsI	GCATC	1 cut(s)	378
BpmI	CTGGAG	3 cut(s)	122, 299, 320
Bpu10I	CCTNAGC	1 cut(s)	320
BpuMI	CCSGG	1 cut(s)	138
BsaAI	YACGTR	1 cut(s)	159
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 100
Bse1I	ACTGG	1 cut(s)	282
BseBI	CCWGG	1 cut(s)	17
BseGI	GGATG	1 cut(s)	369
BseLI	CCNNNNNNNGG	2 cut(s)	49, 100
BseNI	ACTGG	1 cut(s)	282
BseRI	GAGGAG	1 cut(s)	317
BseXI	GCAGC	1 cut(s)	134
BshFI	GGCC	1 cut(s)	20
BsiSI	CCGG	1 cut(s)	137
BslI	CCNNNNNNNGG	2 cut(s)	49, 100
BsnI	GGCC	1 cut(s)	20
Bsp143I	GATC	1 cut(s)	198
BspANI	GGCC	1 cut(s)	20
BspMI	ACCTGC	1 cut(s)	161
BspTI	CTTAAG	1 cut(s)	364
BsrI	ACTGG	1 cut(s)	282
BssMI	GATC	1 cut(s)	198
Bst2UI	CCWGG	1 cut(s)	17
Bst6I	CTCTTC	2 cut(s)	114, 371
BstAFI	CTTAAG	1 cut(s)	364
BstBAI	YACGTR	1 cut(s)	159
BstDEI	CTNAG	2 cut(s)	202, 320
BstF5I	GGATG	1 cut(s)	369
BstKTI	GATC	1 cut(s)	201
BstMBI	GATC	1 cut(s)	198
BstMWI	GCNNNNNNNGC	2 cut(s)	325, 334
BstNI	CCWGG	1 cut(s)	17
BstSCI	CCNGG	2 cut(s)	15, 136
BstV1I	GCAGC	1 cut(s)	134
BsuRI	GGCC	1 cut(s)	20
BtrI	CACGTC	1 cut(s)	296
BtsCI	GGATG	1 cut(s)	369
BveI	ACCTGC	1 cut(s)	161
Cfr13I	GGNCC	1 cut(s)	134
CseI	GACGC	1 cut(s)	343
CviJI	RGCY	4 cut(s)	20, 42, 263, 319
CviKI_1	RGCY	4 cut(s)	20, 42, 263, 319
DdeI	CTNAG	2 cut(s)	202, 320
DpnI	GATC	1 cut(s)	200
DpnII	GATC	1 cut(s)	198
Eam1104I	CTCTTC	2 cut(s)	114, 371
EarI	CTCTTC	2 cut(s)	114, 371
Eco47I	GGWCC	1 cut(s)	134
Eco72I	CACGTG	1 cut(s)	159
EcoRII	CCWGG	1 cut(s)	15
EcoT22I	ATGCAT	1 cut(s)	72
FaiI	YATR	5 cut(s)	72, 74, 89, 91, 267
FauNDI	CATATG	1 cut(s)	72
Fnu4HI	GCNGC	1 cut(s)	148
FokI	GGATG	1 cut(s)	356
Fsp4HI	GCNGC	1 cut(s)	148
FspBI	CTAG	1 cut(s)	176
GluI	GCNGC	1 cut(s)	148
GsuI	CTGGAG	3 cut(s)	122, 299, 320
HaeIII	GGCC	1 cut(s)	20
HapII	CCGG	1 cut(s)	137
HgaI	GACGC	1 cut(s)	343
HinfI	GANTC	2 cut(s)	141, 206
HpaII	CCGG	1 cut(s)	137
Hpy166II	GTNNAC	1 cut(s)	156
Hpy188I	TCNGA	2 cut(s)	37, 241
Hpy188III	TCNNGA	3 cut(s)	101, 299, 373
Hpy8I	GTNNAC	1 cut(s)	156
HpyCH4IV	ACGT	2 cut(s)	158, 295
HpyCH4V	TGCA	3 cut(s)	70, 162, 256
HpyF10VI	GCNNNNNNNGC	2 cut(s)	325, 334
HpyF3I	CTNAG	2 cut(s)	202, 320
HpySE526I	ACGT	2 cut(s)	158, 295
Kzo9I	GATC	1 cut(s)	198
LpnPI	CCDG	9 cut(s)	2, 29, 86, 150, 156, 226, 245, 263, 284
Lsp1109I	GCAGC	1 cut(s)	134
LweI	GCATC	1 cut(s)	378
MaeI	CTAG	1 cut(s)	176
MaeII	ACGT	2 cut(s)	158, 295
MaeIII	GTNAC	2 cut(s)	3, 228
MalI	GATC	1 cut(s)	200
MboI	GATC	1 cut(s)	198
MboII	GAAGA	1 cut(s)	131
MluCI	AATT	3 cut(s)	61, 96, 347
MnlI	CCTC	3 cut(s)	97, 295, 298
Mph1103I	ATGCAT	1 cut(s)	72
MseI	TTAA	6 cut(s)	23, 65, 78, 108, 350, 365
MspCI	CTTAAG	1 cut(s)	364
MspI	CCGG	1 cut(s)	137
MspR9I	CCNGG	2 cut(s)	17, 138
MvaI	CCWGG	1 cut(s)	17
MwoI	GCNNNNNNNGC	2 cut(s)	325, 334
NciI	CCSGG	1 cut(s)	138
NdeI	CATATG	1 cut(s)	72
NdeII	GATC	1 cut(s)	198
NmuCI	GTSAC	1 cut(s)	3
NsiI	ATGCAT	1 cut(s)	72
PfeI	GAWTC	2 cut(s)	141, 206
PkrI	GCNGC	1 cut(s)	149
PmaCI	CACGTG	1 cut(s)	159
PmlI	CACGTG	1 cut(s)	159
Ppu21I	YACGTR	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	15
PspCI	CACGTG	1 cut(s)	159
PspGI	CCWGG	1 cut(s)	15
PspPI	GGNCC	1 cut(s)	134
SaqAI	TTAA	6 cut(s)	23, 65, 78, 108, 350, 365
SatI	GCNGC	1 cut(s)	148
Sau3AI	GATC	1 cut(s)	198
Sau96I	GGNCC	1 cut(s)	134
ScrFI	CCNGG	2 cut(s)	17, 138
SetI	ASST	5 cut(s)	108, 161, 175, 215, 298
SfaNI	GCATC	1 cut(s)	378
SinI	GGWCC	1 cut(s)	134
SmlI	CTYRAG	1 cut(s)	364
SmoI	CTYRAG	1 cut(s)	364
Sse9I	AATT	3 cut(s)	61, 96, 347
SspMI	CTAG	1 cut(s)	176
StyD4I	CCNGG	2 cut(s)	15, 136
TaiI	ACGT	2 cut(s)	161, 298
TasI	AATT	3 cut(s)	61, 96, 347
TfiI	GAWTC	2 cut(s)	141, 206
Tru1I	TTAA	6 cut(s)	23, 65, 78, 108, 350, 365
Tru9I	TTAA	6 cut(s)	23, 65, 78, 108, 350, 365
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	1 cut(s)	147
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	3 cut(s)	172, 288, 327
Vha464I	CTTAAG	1 cut(s)	364
VpaK11BI	GGWCC	1 cut(s)	134
XapI	RAATTY	1 cut(s)	61
XspI	CTAG	1 cut(s)	176
Zsp2I	ATGCAT	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.