pycom15g00670

cinnamyl alcohol dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0000739
Physical Location & Seq
Forward (+)
378734 .. 379348
615 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g00670.1

Sequence Viewer

Length: 615 bp
ATGATTTCCACAACCACAAGTAGCTGTAGCACAAAGTCCATGGAAGATGTTTGGAAAGACATCAGCCTGGCGTCTCTTTCTCGAAACGCCAGCGACAACACCAGCACCTCCACTCACCACCCCACTGCCGCTGCTTTTCGGGGCATCATGTTGCAAGATTTCTTGGCTTCTACTAGTACTACTTCCTCCAACATCGACCCACCACCACCCGCTGCCGCTACTACTGTTCTGCGCTTGAATTGTGGGACTCGATCTGATCTTAAACAGCATTTACTTGAAACCACTAGTACTACTATCACTGGTCCTCCTCTATTGAAACCAAATTCAATTACTCGTCCTACTAGTACTAGTGTTACTACTACTACTAGGCCTAATTCTTTGAATAATCCCTCTTCAGTCTTCCCTTCTTGCTGCAAGAAAAGGGCTCTAGATGATCATGATCAAAATCGTGAGGATCATCACAACTCCACTAATGGCGGCCGCCATAAGCGCATGATGAAGAATCGAGAGTCCGCTGCTCGCTCCAGAGCCCGAAAGCAGGAACCTTTCTGTCCATCTATTTCATTACTGATCGTGTGCTCTTACACTACTACTTTTGTGTTGTTTGGTTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
ADH_N ADH_zinc_N

Protein Analysis

205

Amino Acids

22.17

Weight (kDa)

9.5

Isoelectric Point (pI)

48.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 129, 210, 216, 477, 481, 513
AclWI GGATC 1 cut(s) 462
AcoI YGGCCR 1 cut(s) 478
AcsI RAATTY 1 cut(s) 322
AcuI CTGAAG 1 cut(s) 378
AcyI GRCGYC 1 cut(s) 71
AfaI GTAC 3 cut(s) 178, 289, 346
AfiI CCNNNNNNNGG 1 cut(s) 538
AgsI TTSAA 5 cut(s) 238, 278, 316, 327, 382
AhlI ACTAGT 4 cut(s) 173, 284, 341, 347
AjnI CCWGG 1 cut(s) 66
AluBI AGCT 1 cut(s) 24
AluI AGCT 1 cut(s) 24
Alw21I GWGCWC 1 cut(s) 581
Alw26I GTCTC 1 cut(s) 78
AlwI GGATC 1 cut(s) 462
AoxI GGCC 2 cut(s) 368, 478
ApeKI GCWGC 4 cut(s) 131, 212, 411, 515
ApoI RAATTY 1 cut(s) 322
AspLEI GCGC 2 cut(s) 234, 492
AspS9I GGNCC 1 cut(s) 302
AsuHPI GGTGA 1 cut(s) 107
AvaII GGWCC 1 cut(s) 302
BanII GRGCYC 2 cut(s) 427, 532
BbsI GAAGAC 1 cut(s) 391
Bbv12I GWGCWC 1 cut(s) 581
BbvI GCAGC 4 cut(s) 118, 199, 398, 502
BccI CCATC 1 cut(s) 562
BciT130I CCWGG 1 cut(s) 68
BclI TGATCA 2 cut(s) 433, 439
BcoDI GTCTC 1 cut(s) 78
BcuI ACTAGT 4 cut(s) 173, 284, 341, 347
BfaI CTAG 6 cut(s) 174, 285, 342, 348, 366, 428
BfmI CTRYAG 1 cut(s) 25
BisI GCNGC 8 cut(s) 129, 132, 213, 216, 412, 478, 481, 516
BlsI GCNGC 8 cut(s) 130, 133, 214, 217, 413, 479, 482, 517
BmcAI AGTACT 3 cut(s) 178, 289, 346
Bme1390I CCNGG 1 cut(s) 68
Bme18I GGWCC 1 cut(s) 302
BmgT120I GGNCC 1 cut(s) 302
BmiI GGNNCC 1 cut(s) 543
BmrFI CCNGG 1 cut(s) 68
BmsI GCATC 1 cut(s) 153
BpiI GAAGAC 1 cut(s) 391
BpmI CTGGAG 1 cut(s) 508
BsaBI GATNNNNATC 2 cut(s) 438, 444
BsaHI GRCGYC 1 cut(s) 71
BsaJI CCNNGG 1 cut(s) 39
BsaXI ACNNNNNCTCC 2 cut(s) 289, 319
Bsc4I CCNNNNNNNGG 1 cut(s) 538
Bse1I ACTGG 1 cut(s) 304
Bse8I GATNNNNATC 2 cut(s) 438, 444
BseBI CCWGG 1 cut(s) 68
BseDI CCNNGG 1 cut(s) 39
BseJI GATNNNNATC 2 cut(s) 438, 444
BseLI CCNNNNNNNGG 1 cut(s) 538
BseNI ACTGG 1 cut(s) 304
BseRI GAGGAG 1 cut(s) 297
BseX3I CGGCCG 1 cut(s) 478
BseXI GCAGC 4 cut(s) 118, 199, 398, 502
Bsh1285I CGRYCG 1 cut(s) 481
BshFI GGCC 2 cut(s) 370, 480
BsiEI CGRYCG 1 cut(s) 481
BsiHKAI GWGCWC 1 cut(s) 581
BslFI GGGAC 1 cut(s) 259
BslI CCNNNNNNNGG 1 cut(s) 538
BsmAI GTCTC 1 cut(s) 78
BsmBI CGTCTC 1 cut(s) 78
BsmFI GGGAC 1 cut(s) 259
BsnI GGCC 2 cut(s) 370, 480
Bsp1286I GDGCHC 3 cut(s) 427, 532, 581
Bsp143I GATC 6 cut(s) 251, 256, 433, 439, 454, 570
Bsp19I CCATGG 1 cut(s) 39
BspACI CCGC 6 cut(s) 129, 210, 216, 477, 481, 513
BspANI GGCC 2 cut(s) 370, 480
BspHI TCATGA 1 cut(s) 436
BspLI GGNNCC 1 cut(s) 543
BspPI GGATC 1 cut(s) 462
BsrI ACTGG 1 cut(s) 304
BssECI CCNNGG 1 cut(s) 39
BssMI GATC 6 cut(s) 251, 256, 433, 439, 454, 570
BssNI GRCGYC 1 cut(s) 71
BssT1I CCWWGG 1 cut(s) 39
Bst2UI CCWGG 1 cut(s) 68
Bst4CI ACNGT 1 cut(s) 226
Bst6I CTCTTC 1 cut(s) 397
BstACI GRCGYC 1 cut(s) 71
BstC8I GCNNGC 2 cut(s) 91, 520
BstDSI CCRYGG 1 cut(s) 39
BstHHI GCGC 2 cut(s) 234, 492
BstKTI GATC 6 cut(s) 254, 259, 436, 442, 457, 573
BstMAI GTCTC 1 cut(s) 78
BstMBI GATC 6 cut(s) 251, 256, 433, 439, 454, 570
BstMCI CGRYCG 1 cut(s) 481
BstMWI GCNNNNNNNGC 1 cut(s) 489
BstNI CCWGG 1 cut(s) 68
BstSCI CCNGG 1 cut(s) 66
BstSFI CTRYAG 1 cut(s) 25
BstV1I GCAGC 4 cut(s) 118, 199, 398, 502
BstV2I GAAGAC 1 cut(s) 391
BstZI CGGCCG 1 cut(s) 478
BsuRI GGCC 2 cut(s) 370, 480
BtgI CCRYGG 1 cut(s) 39
BtsI GCAGTG 1 cut(s) 123
BtsIMutI CAGTG 2 cut(s) 123, 297
Cac8I GCNNGC 2 cut(s) 91, 520
CciI TCATGA 1 cut(s) 436
CciNI GCGGCCGC 1 cut(s) 478
CfoI GCGC 2 cut(s) 234, 492
Cfr13I GGNCC 1 cut(s) 302
CseI GACGC 1 cut(s) 60
Csp6I GTAC 3 cut(s) 177, 288, 345
CviAII CATG 4 cut(s) 40, 148, 437, 493
CviJI RGCY 7 cut(s) 24, 66, 167, 370, 425, 480, 530
CviKI_1 RGCY 7 cut(s) 24, 66, 167, 370, 425, 480, 530
CviQI GTAC 3 cut(s) 177, 288, 345
DpnI GATC 6 cut(s) 253, 258, 435, 441, 456, 572
DpnII GATC 6 cut(s) 251, 256, 433, 439, 454, 570
EaeI YGGCCR 1 cut(s) 478
EagI CGGCCG 1 cut(s) 478
Eam1104I CTCTTC 1 cut(s) 397
EarI CTCTTC 1 cut(s) 397
EclXI CGGCCG 1 cut(s) 478
Eco130I CCWWGG 1 cut(s) 39
Eco147I AGGCCT 1 cut(s) 370
Eco24I GRGCYC 2 cut(s) 427, 532
Eco47I GGWCC 1 cut(s) 302
Eco52I CGGCCG 1 cut(s) 478
Eco57I CTGAAG 1 cut(s) 378
EcoRII CCWGG 1 cut(s) 66
EcoT14I CCWWGG 1 cut(s) 39
EcoT38I GRGCYC 2 cut(s) 427, 532
ErhI CCWWGG 1 cut(s) 39
Esp3I CGTCTC 1 cut(s) 78
FaeI CATG 4 cut(s) 43, 151, 440, 496
FaiI YATR 5 cut(s) 41, 149, 438, 486, 494
FaqI GGGAC 1 cut(s) 259
FatI CATG 4 cut(s) 39, 147, 436, 492
FauI CCCGC 1 cut(s) 217
FbaI TGATCA 2 cut(s) 433, 439
Fnu4HI GCNGC 8 cut(s) 129, 132, 213, 216, 412, 478, 481, 516
FriOI GRGCYC 2 cut(s) 427, 532
Fsp4HI GCNGC 8 cut(s) 129, 132, 213, 216, 412, 478, 481, 516
FspBI CTAG 6 cut(s) 174, 285, 342, 348, 366, 428
GlaI GCGC 2 cut(s) 233, 491
GluI GCNGC 8 cut(s) 129, 132, 213, 216, 412, 478, 481, 516
GsuI CTGGAG 1 cut(s) 508
HaeIII GGCC 2 cut(s) 370, 480
HgaI GACGC 1 cut(s) 60
HhaI GCGC 2 cut(s) 234, 492
Hin1I GRCGYC 1 cut(s) 71
Hin1II CATG 4 cut(s) 43, 151, 440, 496
Hin6I GCGC 2 cut(s) 232, 490
HinP1I GCGC 2 cut(s) 232, 490
HinfI GANTC 3 cut(s) 247, 502, 509
HphI GGTGA 1 cut(s) 107
Hpy188I TCNGA 1 cut(s) 256
Hpy188III TCNNGA 7 cut(s) 81, 428, 437, 449, 506, 525, 612
HpyAV CCTTC 1 cut(s) 414
HpyCH4III ACNGT 1 cut(s) 226
HpyCH4V TGCA 2 cut(s) 154, 414
HpyF10VI GCNNNNNNNGC 1 cut(s) 489
Hsp92I GRCGYC 1 cut(s) 71
Hsp92II CATG 4 cut(s) 43, 151, 440, 496
HspAI GCGC 2 cut(s) 232, 490
Ksp22I TGATCA 2 cut(s) 433, 439
Kzo9I GATC 6 cut(s) 251, 256, 433, 439, 454, 570
LmnI GCTCC 1 cut(s) 527
LpnPI CCDG 7 cut(s) 53, 80, 103, 115, 285, 524, 538
Lsp1109I GCAGC 4 cut(s) 118, 199, 398, 502
LweI GCATC 1 cut(s) 153
MaeI CTAG 6 cut(s) 174, 285, 342, 348, 366, 428
MaeIII GTNAC 1 cut(s) 352
MalI GATC 6 cut(s) 253, 258, 435, 441, 456, 572
MboI GATC 6 cut(s) 251, 256, 433, 439, 454, 570
MboII GAAGA 4 cut(s) 56, 384, 391, 511
MhlI GDGCHC 3 cut(s) 427, 532, 581
MluCI AATT 4 cut(s) 238, 322, 327, 373
MlyI GAGTC 2 cut(s) 241, 518
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 6 cut(s) 118, 196, 315, 318, 400, 445
MseI TTAA 1 cut(s) 261
MspA1I CMGCKG 3 cut(s) 131, 212, 515
MspR9I CCNGG 1 cut(s) 68
MvaI CCWGG 1 cut(s) 68
MwoI GCNNNNNNNGC 1 cut(s) 489
NcoI CCATGG 1 cut(s) 39
NdeII GATC 6 cut(s) 251, 256, 433, 439, 454, 570
NlaIII CATG 4 cut(s) 43, 151, 440, 496
NlaIV GGNNCC 1 cut(s) 543
NotI GCGGCCGC 1 cut(s) 478
PagI TCATGA 1 cut(s) 436
PceI AGGCCT 1 cut(s) 370
PfeI GAWTC 1 cut(s) 502
PkrI GCNGC 8 cut(s) 130, 133, 214, 217, 413, 479, 482, 517
PleI GAGTC 2 cut(s) 241, 517
PpsI GAGTC 2 cut(s) 241, 517
Psp6I CCWGG 1 cut(s) 66
PspGI CCWGG 1 cut(s) 66
PspN4I GGNNCC 1 cut(s) 543
PspPI GGNCC 1 cut(s) 302
RsaI GTAC 3 cut(s) 178, 289, 346
RsaNI GTAC 3 cut(s) 177, 288, 345
SaqAI TTAA 1 cut(s) 261
SatI GCNGC 8 cut(s) 129, 132, 213, 216, 412, 478, 481, 516
Sau3AI GATC 6 cut(s) 251, 256, 433, 439, 454, 570
Sau96I GGNCC 1 cut(s) 302
ScaI AGTACT 3 cut(s) 178, 289, 346
SchI GAGTC 2 cut(s) 241, 518
ScrFI CCNGG 1 cut(s) 68
SduI GDGCHC 3 cut(s) 427, 532, 581
SetI ASST 3 cut(s) 26, 110, 547
SfaNI GCATC 1 cut(s) 153
SfcI CTRYAG 1 cut(s) 25
SinI GGWCC 1 cut(s) 302
SpeI ACTAGT 4 cut(s) 173, 284, 341, 347
Sse9I AATT 4 cut(s) 238, 322, 327, 373
SseBI AGGCCT 1 cut(s) 370
SsiI CCGC 6 cut(s) 129, 210, 216, 477, 481, 513
SspMI CTAG 6 cut(s) 174, 285, 342, 348, 366, 428
StuI AGGCCT 1 cut(s) 370
StyD4I CCNGG 1 cut(s) 66
StyI CCWWGG 1 cut(s) 39
TaaI ACNGT 1 cut(s) 226
TaqI TCGA 4 cut(s) 82, 195, 250, 505
TasI AATT 4 cut(s) 238, 322, 327, 373
TatI WGTACW 3 cut(s) 176, 287, 344
TauI GCSGC 4 cut(s) 131, 218, 480, 483
TfiI GAWTC 1 cut(s) 502
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
TscAI CASTG 2 cut(s) 130, 304
TseI GCWGC 4 cut(s) 131, 212, 411, 515
TspDTI ATGAA 2 cut(s) 512, 552
TspRI CASTG 2 cut(s) 130, 304
VpaK11BI GGWCC 1 cut(s) 302
XapI RAATTY 1 cut(s) 322
XbaI TCTAGA 1 cut(s) 427
XspI CTAG 6 cut(s) 174, 285, 342, 348, 366, 428
ZrmI AGTACT 3 cut(s) 178, 289, 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.