Rorug06G0321700
BZIP Family

regulation of photoperiodism, flowering

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000739
Physical Location & Seq
Reverse (-)
47331601 .. 47335171
3571 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0321700.1

Sequence Viewer

Length: 1482 bp
ATGGAAGAAACACTCCCAATGTTGAGCTCTCGCCGGCCGGAGCAGACTCCGGTGGGACTTGACAACCTCCCCAAAAGCCCAAGAGTCCCAATGGAGTTCCTCTCAAGGTCTTGGAGTGCTTCTGCTCTTGAAGTCTCCAAAGCTCTGTCTCAACCACCCCCTATTCCTCAATGCATGAACTCTAAGTCCACCCACAATTCTTCTTCTTGCACCACCACCACAACAGCTTCTATACCCGAAGATGTAGCCGGAGAATCTGAAGAGACTCCAGTTCTGTCTGGGAATCAATTCTACTTTGCTACCTCTGCTACTTCTCAGTTGGTCCTGGACCGCATTATGTCACAGTCCATGAGAGAGGAAGTGTCACCATTAACATCAGGGAGGCTTTCACACAGCTCTGGACCATTGAACGCTGGAGGCTCATTTGAGACTGATAGCCCTCCTGTTTCTCCATCGGAGGAGTTCGACGACGTCGTTAAGTTCTTTCGCAACCACAACAGCATAAACCAGCTGTTCAACAACGGCAGTCGGAGCAGCGCTGCAAATGTCAGTAGTACCCCTGCTACCGGGGGAGCCAAGACAGTTGGGAGATGGTTGAAGGATCGAAAAGAGAAGAAAAAGGAGGAGACTAGAGTCCACAATGCTCAAGTCCACGCAGCCGTTTCAGTTGCCGCAGTGGCTGCTGCTGTAGCTGCCATTGCGGCAGCCACAGCCGCTTCTTCTTCAATCTCATCAAGAAACAACAACGAACAAGCGGCCAAGACGGATATGGCTGTGGCATCTGCTGCTACATTGGTAGCTGCACAATGTGCTGAAGCTGCAGAGGCTATGGGAGCTGAGCATGACCATCTTACTTCTGTGGTTAGCTCTGCAGTCAATGTTCGCTCTCATGATGATATTACCACTCTCACTGCTGCCGCTGCCACAGCTTTAAGAGGTGCAGCGACACTCAAGGCGAGGGCAATGAAGGAGGTGTGGAACATAGCAGCAGTGATACCAGTGGAAAAAGGAATGGGAATCGGGGTCTGTGGTAAAGGCAATAACAACAGCAATGGCAGCTTTAGTAGCAGTGAAGAGCTTGTCCCTGCTCCTAACACTTTTCTTGGGGCCTCTAACCAAGACCTGCTTGCTAGGGGAACTGAACTCCTCAAACGCACCCGAAAAGGTGATCTTCACTGGAAAGTAGTATCTGTTTATATTCATCGAACAGGCCAGGTGATGCTGAAAATGAAGAGCAAACATGTTGCAGGAACATTCACCAAAAAGAAAAAGAATGTTGTGTTGGAAGTGTGCAAGAACATGCCGGCATGGTCTGGGAGGCACTTGTTCGAGGGTGGAGAGCAGCGCCGTTACTTTGGACTGAAAACAGAATCGCGAGGAGTCGTGGAGTTTGAGTGCAAGAATCAGAGGGAACATGACGTCTGGACTCATGGAGTTTCGAGGCTGCTCTCTATTGTAGCCGAGAGAAAGAACATGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1

Protein Analysis

493

Amino Acids

52.81

Weight (kDa)

9.11

Isoelectric Point (pI)

50.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_canalis PF05703 24 - 337 2.6e-110 Auxin canalisation
PH_2 PF08458 381 - 486 6.5e-44 Plant pleckstrin homology-like region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 474, 1422
Acc36I ACCTGC 1 cut(s) 1131
AccII CGCG 1 cut(s) 1375
AciI CCGC 6 cut(s) 331, 672, 701, 714, 755, 918
AclWI GGATC 1 cut(s) 609
AcoI YGGCCR 2 cut(s) 35, 756
AcuI CTGAAG 2 cut(s) 279, 834
AcyI GRCGYC 2 cut(s) 471, 1419
AdeI CACNNNGTG 1 cut(s) 809
AfaI GTAC 1 cut(s) 556
AfeI AGCGCT 1 cut(s) 538
AfiI CCNNNNNNNGG 1 cut(s) 566
AflIII ACRYGT 1 cut(s) 1240
AgsI TTSAA 5 cut(s) 131, 409, 517, 598, 726
AjnI CCWGG 2 cut(s) 324, 1212
AjuI GAANNNNNNNTTGG 2 cut(s) 1265, 1297
AloI GAACNNNNNNTCC 2 cut(s) 170, 202
Alw21I GWGCWC 1 cut(s) 29
Alw26I GTCTC 5 cut(s) 139, 153, 257, 422, 620
AlwI GGATC 1 cut(s) 609
AlwNI CAGNNNCTG 1 cut(s) 680
Aor51HI AGCGCT 1 cut(s) 538
AoxI GGCC 4 cut(s) 35, 756, 1107, 1210
Asp700I GAANNNNTTC 1 cut(s) 287
AspLEI GCGC 2 cut(s) 539, 1347
AspS9I GGNCC 4 cut(s) 322, 328, 401, 1107
AsuC2I CCSGG 1 cut(s) 568
AsuHPI GGTGA 4 cut(s) 357, 1178, 1228, 1249
AvaII GGWCC 3 cut(s) 322, 328, 401
BanII GRGCYC 1 cut(s) 29
Bbv12I GWGCWC 1 cut(s) 29
BccI CCATC 3 cut(s) 460, 585, 855
BceAI ACGGC 3 cut(s) 538, 644, 1332
BciT130I CCWGG 2 cut(s) 326, 1214
BcnI CCSGG 1 cut(s) 568
BcoDI GTCTC 5 cut(s) 139, 153, 257, 422, 620
BfaI CTAG 2 cut(s) 630, 1131
BfmI CTRYAG 3 cut(s) 687, 819, 870
BfoI RGCGCY 2 cut(s) 540, 1348
BfuAI ACCTGC 1 cut(s) 1131
BglI GCCNNNNNGGC 2 cut(s) 677, 701
BlpI GCTNAGC 1 cut(s) 837
Bme1390I CCNGG 3 cut(s) 326, 568, 1214
Bme18I GGWCC 3 cut(s) 322, 328, 401
BmgT120I GGNCC 4 cut(s) 322, 328, 401, 1107
BmiI GGNNCC 2 cut(s) 574, 1108
BmrFI CCNGG 3 cut(s) 326, 568, 1214
BmsI GCATC 2 cut(s) 788, 1209
BoxI GACNNNNGTC 1 cut(s) 632
BplI GAGNNNNNCTC 2 cut(s) 86, 118
BpmI CTGGAG 2 cut(s) 252, 435
Bpu1102I GCTNAGC 1 cut(s) 837
BpuEI CTTGAG 3 cut(s) 88, 630, 935
BpuMI CCSGG 1 cut(s) 568
BsaHI GRCGYC 2 cut(s) 471, 1419
BsaJI CCNNGG 1 cut(s) 567
BsaWI WCCGGW 1 cut(s) 49
BsaXI ACNNNNNCTCC 2 cut(s) 1379, 1409
Bsc4I CCNNNNNNNGG 1 cut(s) 566
Bse118I RCCGGY 2 cut(s) 33, 1303
Bse1I ACTGG 3 cut(s) 269, 998, 1181
Bse3DI GCAATG 3 cut(s) 696, 969, 1057
BseBI CCWGG 2 cut(s) 326, 1214
BseDI CCNNGG 1 cut(s) 567
BseLI CCNNNNNNNGG 1 cut(s) 566
BseMI GCAATG 3 cut(s) 696, 969, 1057
BseMII CTCAG 2 cut(s) 329, 828
BseNI ACTGG 3 cut(s) 269, 998, 1181
BseRI GAGGAG 4 cut(s) 473, 638, 1136, 1392
BseX3I CGGCCG 1 cut(s) 35
BsgI GTGCAG 2 cut(s) 786, 960
Bsh1236I CGCG 1 cut(s) 1375
Bsh1285I CGRYCG 1 cut(s) 38
BshFI GGCC 4 cut(s) 37, 758, 1109, 1212
BsiEI CGRYCG 1 cut(s) 38
BsiHKAI GWGCWC 1 cut(s) 29
BsiSI CCGG 6 cut(s) 34, 38, 50, 249, 567, 1304
BslFI GGGAC 3 cut(s) 69, 71, 1067
BslI CCNNNNNNNGG 1 cut(s) 566
BsmAI GTCTC 5 cut(s) 139, 153, 257, 422, 620
BsmFI GGGAC 3 cut(s) 69, 71, 1067
BsnI GGCC 4 cut(s) 37, 758, 1109, 1212
Bsp1286I GDGCHC 1 cut(s) 29
Bsp143I GATC 2 cut(s) 601, 1168
Bsp1720I GCTNAGC 1 cut(s) 837
Bsp68I TCGCGA 1 cut(s) 1375
BspACI CCGC 6 cut(s) 331, 672, 701, 714, 755, 918
BspANI GGCC 4 cut(s) 37, 758, 1109, 1212
BspCNI CTCAG 2 cut(s) 328, 829
BspFNI CGCG 1 cut(s) 1375
BspHI TCATGA 1 cut(s) 889
BspLI GGNNCC 2 cut(s) 574, 1108
BspMAI CTGCAG 2 cut(s) 823, 874
BspMI ACCTGC 1 cut(s) 1131
BspPI GGATC 1 cut(s) 609
BspQI GCTCTTC 2 cut(s) 1068, 1226
BsrDI GCAATG 3 cut(s) 696, 969, 1057
BsrFI RCCGGY 2 cut(s) 33, 1303
BsrI ACTGG 3 cut(s) 269, 998, 1181
BssAI RCCGGY 2 cut(s) 33, 1303
BssECI CCNNGG 1 cut(s) 567
BssMI GATC 2 cut(s) 601, 1168
BssNI GRCGYC 2 cut(s) 471, 1419
Bst2UI CCWGG 2 cut(s) 326, 1214
Bst4CI ACNGT 2 cut(s) 345, 583
Bst6I CTCTTC 3 cut(s) 255, 1068, 1226
BstACI GRCGYC 2 cut(s) 471, 1419
BstAPI GCANNNNNTGC 3 cut(s) 680, 785, 809
BstC8I GCNNGC 3 cut(s) 35, 1128, 1305
BstDEI CTNAG 3 cut(s) 183, 315, 837
BstFNI CGCG 1 cut(s) 1375
BstH2I RGCGCY 2 cut(s) 540, 1348
BstHHI GCGC 2 cut(s) 539, 1347
BstKTI GATC 2 cut(s) 604, 1171
BstMAI GTCTC 5 cut(s) 139, 153, 257, 422, 620
BstMBI GATC 2 cut(s) 601, 1168
BstMCI CGRYCG 1 cut(s) 38
BstNI CCWGG 2 cut(s) 326, 1214
BstNSI RCATGY 3 cut(s) 1244, 1303, 1477
BstPAI GACNNNNGTC 1 cut(s) 632
BstSCI CCNGG 3 cut(s) 324, 566, 1212
BstSFI CTRYAG 3 cut(s) 687, 819, 870
BstUI CGCG 1 cut(s) 1375
BstZI CGGCCG 1 cut(s) 35
BsuRI GGCC 4 cut(s) 37, 758, 1109, 1212
BtsI GCAGTG 4 cut(s) 681, 909, 996, 1075
BtsIMutI CAGTG 6 cut(s) 681, 909, 996, 1005, 1075, 1174
BtuMI TCGCGA 1 cut(s) 1375
BveI ACCTGC 1 cut(s) 1131
Cac8I GCNNGC 3 cut(s) 35, 1128, 1305
CaiI CAGNNNCTG 1 cut(s) 680
CciI TCATGA 1 cut(s) 889
CfoI GCGC 2 cut(s) 539, 1347
Cfr10I RCCGGY 2 cut(s) 33, 1303
Cfr13I GGNCC 4 cut(s) 322, 328, 401, 1107
Csp6I GTAC 1 cut(s) 555
CviQI GTAC 1 cut(s) 555
DdeI CTNAG 3 cut(s) 183, 315, 837
DpnI GATC 2 cut(s) 603, 1170
DpnII GATC 2 cut(s) 601, 1168
DraIII CACNNNGTG 1 cut(s) 809
EaeI YGGCCR 2 cut(s) 35, 756
EagI CGGCCG 1 cut(s) 35
Eam1104I CTCTTC 3 cut(s) 255, 1068, 1226
EarI CTCTTC 3 cut(s) 255, 1068, 1226
Ecl136II GAGCTC 1 cut(s) 27
EclXI CGGCCG 1 cut(s) 35
Eco24I GRGCYC 1 cut(s) 29
Eco47I GGWCC 3 cut(s) 322, 328, 401
Eco47III AGCGCT 1 cut(s) 538
Eco52I CGGCCG 1 cut(s) 35
Eco53kI GAGCTC 1 cut(s) 27
Eco57I CTGAAG 2 cut(s) 279, 834
EcoICRI GAGCTC 1 cut(s) 27
EcoO109I RGGNCCY 1 cut(s) 1107
EcoRII CCWGG 2 cut(s) 324, 1212
EcoT22I ATGCAT 2 cut(s) 176, 1479
EcoT38I GRGCYC 1 cut(s) 29
FalI AAGNNNNNCTT 4 cut(s) 1110, 1142, 1155, 1187
FaqI GGGAC 3 cut(s) 69, 71, 1067
FriOI GRGCYC 1 cut(s) 29
FspBI CTAG 2 cut(s) 630, 1131
GlaI GCGC 2 cut(s) 538, 1346
GsuI CTGGAG 2 cut(s) 252, 435
HaeII RGCGCY 2 cut(s) 540, 1348
HaeIII GGCC 4 cut(s) 37, 758, 1109, 1212
HapII CCGG 6 cut(s) 34, 38, 50, 249, 567, 1304
HhaI GCGC 2 cut(s) 539, 1347
Hin1I GRCGYC 2 cut(s) 471, 1419
Hin6I GCGC 2 cut(s) 537, 1345
HinP1I GCGC 2 cut(s) 537, 1345
HpaII CCGG 6 cut(s) 34, 38, 50, 249, 567, 1304
HphI GGTGA 4 cut(s) 357, 1178, 1228, 1249
Hpy166II GTNNAC 3 cut(s) 189, 637, 652
Hpy188I TCNGA 4 cut(s) 259, 457, 531, 1407
Hpy188III TCNNGA 6 cut(s) 128, 399, 735, 890, 1374, 1423
Hpy8I GTNNAC 3 cut(s) 189, 637, 652
Hpy99I CGWCG 3 cut(s) 470, 473, 476
HpyAV CCTTC 2 cut(s) 592, 961
HpyCH4III ACNGT 2 cut(s) 345, 583
HpyCH4IV ACGT 2 cut(s) 471, 1419
HpyF3I CTNAG 3 cut(s) 183, 315, 837
HpySE526I ACGT 2 cut(s) 471, 1419
Hsp92I GRCGYC 2 cut(s) 471, 1419
HspAI GCGC 2 cut(s) 537, 1345
KroI GCCGGC 2 cut(s) 33, 1303
KroNI GCCGGC 2 cut(s) 35, 1305
Kzo9I GATC 2 cut(s) 601, 1168
LguI GCTCTTC 2 cut(s) 1068, 1226
LmnI GCTCC 5 cut(s) 40, 531, 572, 833, 1093
LweI GCATC 2 cut(s) 788, 1209
MaeI CTAG 2 cut(s) 630, 1131
MaeII ACGT 2 cut(s) 471, 1419
MaeIII GTNAC 3 cut(s) 339, 363, 1349
MalI GATC 2 cut(s) 603, 1170
MboI GATC 2 cut(s) 601, 1168
MhlI GDGCHC 1 cut(s) 29
MluCI AATT 2 cut(s) 196, 287
MlyI GAGTC 6 cut(s) 40, 93, 259, 642, 1389, 1420
MmeI TCCRAC 2 cut(s) 509, 1263
Mph1103I ATGCAT 2 cut(s) 176, 1479
MroNI GCCGGC 2 cut(s) 33, 1303
MroXI GAANNNNTTC 1 cut(s) 287
MseI TTAA 4 cut(s) 371, 477, 932, 1480
MspA1I CMGCKG 2 cut(s) 511, 920
MspI CCGG 6 cut(s) 34, 38, 50, 249, 567, 1304
MspR9I CCNGG 3 cut(s) 326, 568, 1214
MvaI CCWGG 2 cut(s) 326, 1214
MvnI CGCG 1 cut(s) 1375
NaeI GCCGGC 2 cut(s) 35, 1305
NciI CCSGG 1 cut(s) 568
NdeII GATC 2 cut(s) 601, 1168
NgoMIV GCCGGC 2 cut(s) 33, 1303
NlaIV GGNNCC 2 cut(s) 574, 1108
NmuCI GTSAC 2 cut(s) 339, 363
NruI TCGCGA 1 cut(s) 1375
NsiI ATGCAT 2 cut(s) 176, 1479
NspI RCATGY 3 cut(s) 1244, 1303, 1477
PagI TCATGA 1 cut(s) 889
PciI ACATGT 1 cut(s) 1240
PciSI GCTCTTC 2 cut(s) 1068, 1226
PcsI WCGNNNNNNNCGW 1 cut(s) 471
PdiI GCCGGC 2 cut(s) 35, 1305
PdmI GAANNNNTTC 1 cut(s) 287
PfeI GAWTC 5 cut(s) 254, 283, 1017, 1370, 1402
PflFI GACNNNGTC 1 cut(s) 470
PfoI TCCNGGA 1 cut(s) 324
PleI GAGTC 6 cut(s) 40, 92, 259, 641, 1388, 1420
PpsI GAGTC 6 cut(s) 40, 92, 259, 641, 1388, 1420
PscI ACATGT 1 cut(s) 1240
PshAI GACNNNNGTC 1 cut(s) 632
Psp124BI GAGCTC 1 cut(s) 29
Psp6I CCWGG 2 cut(s) 324, 1212
PspGI CCWGG 2 cut(s) 324, 1212
PspN4I GGNNCC 2 cut(s) 574, 1108
PspPI GGNCC 4 cut(s) 322, 328, 401, 1107
PstI CTGCAG 2 cut(s) 823, 874
PstNI CAGNNNCTG 1 cut(s) 680
PsyI GACNNNGTC 1 cut(s) 470
PvuII CAGCTG 1 cut(s) 511
RruI TCGCGA 1 cut(s) 1375
RsaI GTAC 1 cut(s) 556
RsaNI GTAC 1 cut(s) 555
SacI GAGCTC 1 cut(s) 29
SapI GCTCTTC 2 cut(s) 1068, 1226
SaqAI TTAA 4 cut(s) 371, 477, 932, 1480
Sau3AI GATC 2 cut(s) 601, 1168
Sau96I GGNCC 4 cut(s) 322, 328, 401, 1107
SchI GAGTC 6 cut(s) 40, 93, 259, 642, 1389, 1420
ScrFI CCNGG 3 cut(s) 326, 568, 1214
SduI GDGCHC 1 cut(s) 29
SfaNI GCATC 2 cut(s) 788, 1209
SfcI CTRYAG 3 cut(s) 687, 819, 870
SinI GGWCC 3 cut(s) 322, 328, 401
SmlI CTYRAG 3 cut(s) 103, 645, 950
SmoI CTYRAG 3 cut(s) 103, 645, 950
Sse9I AATT 2 cut(s) 196, 287
SsiI CCGC 6 cut(s) 331, 672, 701, 714, 755, 918
SspMI CTAG 2 cut(s) 630, 1131
SstI GAGCTC 1 cut(s) 29
StyD4I CCNGG 3 cut(s) 324, 566, 1212
TaaI ACNGT 2 cut(s) 345, 583
TaiI ACGT 2 cut(s) 474, 1422
TaqI TCGA 5 cut(s) 465, 604, 1204, 1329, 1439
TasI AATT 2 cut(s) 196, 287
TauI GCSGC 5 cut(s) 674, 704, 716, 758, 920
TfiI GAWTC 5 cut(s) 254, 283, 1017, 1370, 1402
Tru1I TTAA 4 cut(s) 371, 477, 932, 1480
Tru9I TTAA 4 cut(s) 371, 477, 932, 1480
TscAI CASTG 6 cut(s) 681, 916, 996, 1005, 1075, 1181
TseFI GTSAC 2 cut(s) 339, 363
Tsp45I GTSAC 2 cut(s) 339, 363
TspDTI ATGAA 4 cut(s) 191, 980, 1190, 1244
TspGWI ACGGA 1 cut(s) 779
TspRI CASTG 6 cut(s) 681, 916, 996, 1005, 1075, 1181
Tth111I GACNNNGTC 1 cut(s) 470
VpaK11BI GGWCC 3 cut(s) 322, 328, 401
XceI RCATGY 3 cut(s) 1244, 1303, 1477
XcmI CCANNNNNNNNNTGG 1 cut(s) 766
XmnI GAANNNNTTC 1 cut(s) 287
XspI CTAG 2 cut(s) 630, 1131
ZraI GACGTC 2 cut(s) 472, 1420
Zsp2I ATGCAT 2 cut(s) 176, 1479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.