Rh2BG125600
BZIP Family

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000739
Physical Location & Seq
Reverse (-)
10730735 .. 10736751
6017 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG125600.1

Sequence Viewer

Length: 705 bp
ATGTTGTCATCAACTGGTAGTGAAGAAAGCAACTACAACTCATCTTCCTGGTCTTCCCCCACCACAACACCCGCTTCTCCATTCTCGCAGACTACCCCAAGAAGAACCATGGAGGAGGTCTGGAAGGACATCAACCTCGCCTCGCTTTCGGACTCCAACAACTCACTCAACAACAATCCCAACTTCAGAAACATGACCCTCCAGGACTTTCTGGCAAGGCCCTTTGGCAATGTGGTCTCTCCCAGACCCGATCACCACCACCATCACCACACCACTCGCAACTCTCCTCCTCCTCCTCAAGCTGTGATGCCGAGCCCAGCCACTGTTCTGAGCTTGAATCATTTGAGCTCGGACCAGTTTCAGCTCTTCTGTTTAGAGAATCTCAACACTAGGCCTATTGTTAACATCAACCACCCCAATAGTAGTACTGTTTCTGATAACTCTTTCAGTGGTGCTTACCCATTTGAGGGTCTCGGAAACCAATCTTCTCCTTCTTCTGGGTTGGTTATGCCGTCGGGTTTTGCGGTCGGGAAGAAGAGGTTACCGGAATCTGATCGCAGCAACTTCGGAGGAGGAGATCGGAGACACAAGCGGATGATCAAGAATAGAGAATCTGCTGCAAGATCCAGAGCAAGGAAGCAGGAATATTGCTGTCCCTATAATTCTCAAAAGCAAGAAAGCAAGTTTCATCATGCCATGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1

Protein Analysis

234

Amino Acids

26.01

Weight (kDa)

9.47

Isoelectric Point (pI)

75.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_1 PF00170 194 - 217 2.3e-07 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 72, 524, 592
AclWI GGATC 1 cut(s) 618
AcuI CTGAAG 1 cut(s) 169
AfaI GTAC 1 cut(s) 427
AfiI CCNNNNNNNGG 4 cut(s) 466, 467, 497, 633
AgsI TTSAA 1 cut(s) 337
AjnI CCWGG 2 cut(s) 47, 201
AluBI AGCT 4 cut(s) 302, 333, 348, 364
AluI AGCT 4 cut(s) 302, 333, 348, 364
Alw21I GWGCWC 1 cut(s) 350
Alw26I GTCTC 3 cut(s) 241, 476, 577
AlwI GGATC 1 cut(s) 618
AlwNI CAGNNNCTG 1 cut(s) 323
AoxI GGCC 2 cut(s) 218, 392
ApeKI GCWGC 2 cut(s) 558, 617
AspS9I GGNCC 2 cut(s) 219, 352
AsuHPI GGTGA 2 cut(s) 245, 257
AvaII GGWCC 1 cut(s) 352
BanII GRGCYC 2 cut(s) 317, 350
BbsI GAAGAC 1 cut(s) 45
Bbv12I GWGCWC 1 cut(s) 350
BbvI GCAGC 2 cut(s) 570, 604
BccI CCATC 1 cut(s) 270
BceAI ACGGC 1 cut(s) 496
BcgI CGANNNNNNTGC 2 cut(s) 547, 581
BciT130I CCWGG 2 cut(s) 49, 203
BclI TGATCA 1 cut(s) 597
BcoDI GTCTC 3 cut(s) 241, 476, 577
BfaI CTAG 1 cut(s) 390
BisI GCNGC 2 cut(s) 559, 618
BlsI GCNGC 2 cut(s) 560, 619
BmcAI AGTACT 1 cut(s) 427
Bme1390I CCNGG 2 cut(s) 49, 203
Bme18I GGWCC 1 cut(s) 352
BmgT120I GGNCC 2 cut(s) 219, 352
BmrFI CCNGG 2 cut(s) 49, 203
BmsI GCATC 1 cut(s) 297
BpiI GAAGAC 1 cut(s) 45
BpmI CTGGAG 1 cut(s) 185
BpuEI CTTGAG 1 cut(s) 282
BsaI GGTCTC 2 cut(s) 241, 476
BsaJI CCNNGG 2 cut(s) 108, 696
BsaWI WCCGGW 1 cut(s) 544
Bsc4I CCNNNNNNNGG 4 cut(s) 466, 467, 497, 633
Bse1I ACTGG 2 cut(s) 19, 355
Bse3DI GCAATG 1 cut(s) 235
BseBI CCWGG 2 cut(s) 49, 203
BseDI CCNNGG 2 cut(s) 108, 696
BseGI GGATG 1 cut(s) 600
BseLI CCNNNNNNNGG 4 cut(s) 466, 467, 497, 633
BseMI GCAATG 1 cut(s) 235
BseMII CTCAG 1 cut(s) 320
BseNI ACTGG 2 cut(s) 19, 355
BseRI GAGGAG 7 cut(s) 128, 276, 279, 282, 285, 585, 588
BseXI GCAGC 2 cut(s) 570, 604
BseYI CCCAGC 1 cut(s) 316
Bsh1285I CGRYCG 1 cut(s) 528
BshFI GGCC 2 cut(s) 220, 394
BsiEI CGRYCG 1 cut(s) 528
BsiHKAI GWGCWC 1 cut(s) 350
BsiSI CCGG 1 cut(s) 545
BslFI GGGAC 1 cut(s) 639
BslI CCNNNNNNNGG 4 cut(s) 466, 467, 497, 633
BsmAI GTCTC 3 cut(s) 241, 476, 577
BsmFI GGGAC 1 cut(s) 639
BsnI GGCC 2 cut(s) 220, 394
Bso31I GGTCTC 2 cut(s) 241, 476
Bsp1286I GDGCHC 2 cut(s) 317, 350
Bsp143I GATC 5 cut(s) 250, 553, 577, 597, 623
Bsp19I CCATGG 2 cut(s) 108, 696
BspACI CCGC 3 cut(s) 72, 524, 592
BspANI GGCC 2 cut(s) 220, 394
BspCNI CTCAG 1 cut(s) 321
BspPI GGATC 1 cut(s) 618
BspQI GCTCTTC 1 cut(s) 371
BspTNI GGTCTC 2 cut(s) 241, 476
BsrDI GCAATG 1 cut(s) 235
BsrI ACTGG 2 cut(s) 19, 355
BssECI CCNNGG 2 cut(s) 108, 696
BssMI GATC 5 cut(s) 250, 553, 577, 597, 623
BssT1I CCWWGG 2 cut(s) 108, 696
Bst2UI CCWGG 2 cut(s) 49, 203
Bst4CI ACNGT 2 cut(s) 325, 430
Bst6I CTCTTC 2 cut(s) 371, 530
BstDEI CTNAG 1 cut(s) 329
BstDSI CCRYGG 2 cut(s) 108, 696
BstEII GGTNACC 1 cut(s) 540
BstF5I GGATG 1 cut(s) 600
BstKTI GATC 5 cut(s) 253, 556, 580, 600, 626
BstMAI GTCTC 3 cut(s) 241, 476, 577
BstMBI GATC 5 cut(s) 250, 553, 577, 597, 623
BstMCI CGRYCG 1 cut(s) 528
BstNI CCWGG 2 cut(s) 49, 203
BstPI GGTNACC 1 cut(s) 540
BstSCI CCNGG 2 cut(s) 47, 201
BstV1I GCAGC 2 cut(s) 570, 604
BstV2I GAAGAC 1 cut(s) 45
BstX2I RGATCY 1 cut(s) 623
BstYI RGATCY 1 cut(s) 623
BsuRI GGCC 2 cut(s) 220, 394
BtgI CCRYGG 2 cut(s) 108, 696
BtsCI GGATG 1 cut(s) 600
BtsIMutI CAGTG 2 cut(s) 321, 454
CaiI CAGNNNCTG 1 cut(s) 323
Cfr13I GGNCC 2 cut(s) 219, 352
Csp6I GTAC 1 cut(s) 426
CviAII CATG 5 cut(s) 109, 193, 692, 697, 702
CviJI RGCY 8 cut(s) 220, 302, 315, 320, 333, 348, 364, 394
CviKI_1 RGCY 8 cut(s) 220, 302, 315, 320, 333, 348, 364, 394
CviQI GTAC 1 cut(s) 426
DdeI CTNAG 1 cut(s) 329
DpnI GATC 5 cut(s) 252, 555, 579, 599, 625
DpnII GATC 5 cut(s) 250, 553, 577, 597, 623
Eam1104I CTCTTC 2 cut(s) 371, 530
EarI CTCTTC 2 cut(s) 371, 530
Ecl136II GAGCTC 1 cut(s) 348
Eco130I CCWWGG 2 cut(s) 108, 696
Eco147I AGGCCT 1 cut(s) 394
Eco24I GRGCYC 2 cut(s) 317, 350
Eco31I GGTCTC 2 cut(s) 241, 476
Eco47I GGWCC 1 cut(s) 352
Eco53kI GAGCTC 1 cut(s) 348
Eco57I CTGAAG 1 cut(s) 169
Eco91I GGTNACC 1 cut(s) 540
EcoICRI GAGCTC 1 cut(s) 348
EcoO109I RGGNCCY 1 cut(s) 219
EcoO65I GGTNACC 1 cut(s) 540
EcoRII CCWGG 2 cut(s) 47, 201
EcoT14I CCWWGG 2 cut(s) 108, 696
EcoT38I GRGCYC 2 cut(s) 317, 350
ErhI CCWWGG 2 cut(s) 108, 696
FaeI CATG 5 cut(s) 112, 196, 695, 700, 705
FaiI YATR 7 cut(s) 110, 194, 509, 660, 693, 698, 703
FaqI GGGAC 1 cut(s) 639
FatI CATG 5 cut(s) 108, 192, 691, 696, 701
FauI CCCGC 1 cut(s) 79
FbaI TGATCA 1 cut(s) 597
Fnu4HI GCNGC 2 cut(s) 559, 618
FokI GGATG 1 cut(s) 607
FriOI GRGCYC 2 cut(s) 317, 350
Fsp4HI GCNGC 2 cut(s) 559, 618
FspBI CTAG 1 cut(s) 390
GluI GCNGC 2 cut(s) 559, 618
GsaI CCCAGC 1 cut(s) 320
GsuI CTGGAG 1 cut(s) 185
HaeIII GGCC 2 cut(s) 220, 394
HapII CCGG 1 cut(s) 545
Hin1II CATG 5 cut(s) 112, 196, 695, 700, 705
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HinfI GANTC 5 cut(s) 152, 337, 379, 548, 611
HpaI GTTAAC 1 cut(s) 403
HpaII CCGG 1 cut(s) 545
HphI GGTGA 2 cut(s) 245, 257
Hpy166II GTNNAC 1 cut(s) 403
Hpy188I TCNGA 9 cut(s) 151, 188, 330, 352, 436, 476, 553, 569, 582
Hpy188III TCNNGA 4 cut(s) 121, 529, 601, 627
Hpy8I GTNNAC 1 cut(s) 403
Hpy99I CGWCG 1 cut(s) 517
HpyAV CCTTC 2 cut(s) 118, 501
HpyCH4III ACNGT 2 cut(s) 325, 430
HpyCH4V TGCA 1 cut(s) 620
HpyF3I CTNAG 1 cut(s) 329
Hsp92II CATG 5 cut(s) 112, 196, 695, 700, 705
Ksp22I TGATCA 1 cut(s) 597
KspAI GTTAAC 1 cut(s) 403
Kzo9I GATC 5 cut(s) 250, 553, 577, 597, 623
LguI GCTCTTC 1 cut(s) 371
Lsp1109I GCAGC 2 cut(s) 570, 604
LweI GCATC 1 cut(s) 297
MaeI CTAG 1 cut(s) 390
MaeIII GTNAC 1 cut(s) 540
MalI GATC 5 cut(s) 252, 555, 579, 599, 625
MboI GATC 5 cut(s) 250, 553, 577, 597, 623
MboII GAAGA 9 cut(s) 35, 36, 45, 114, 358, 477, 486, 544, 547
MflI RGATCY 1 cut(s) 623
MhlI GDGCHC 2 cut(s) 317, 350
MluCI AATT 1 cut(s) 661
MlyI GAGTC 1 cut(s) 146
MmeI TCCRAC 1 cut(s) 180
MseI TTAA 1 cut(s) 402
MspI CCGG 1 cut(s) 545
MspR9I CCNGG 2 cut(s) 49, 203
MvaI CCWGG 2 cut(s) 49, 203
NcoI CCATGG 2 cut(s) 108, 696
NdeII GATC 5 cut(s) 250, 553, 577, 597, 623
NlaIII CATG 5 cut(s) 112, 196, 695, 700, 705
NmeAIII GCCGAG 1 cut(s) 336
PceI AGGCCT 1 cut(s) 394
PciSI GCTCTTC 1 cut(s) 371
PfeI GAWTC 4 cut(s) 337, 379, 548, 611
PfoI TCCNGGA 1 cut(s) 201
PkrI GCNGC 2 cut(s) 560, 619
PleI GAGTC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 146
Psp124BI GAGCTC 1 cut(s) 350
Psp6I CCWGG 2 cut(s) 47, 201
PspEI GGTNACC 1 cut(s) 540
PspFI CCCAGC 1 cut(s) 316
PspGI CCWGG 2 cut(s) 47, 201
PspPI GGNCC 2 cut(s) 219, 352
PstNI CAGNNNCTG 1 cut(s) 323
PsuI RGATCY 1 cut(s) 623
RsaI GTAC 1 cut(s) 427
RsaNI GTAC 1 cut(s) 426
SacI GAGCTC 1 cut(s) 350
SapI GCTCTTC 1 cut(s) 371
SaqAI TTAA 1 cut(s) 402
SatI GCNGC 2 cut(s) 559, 618
Sau3AI GATC 5 cut(s) 250, 553, 577, 597, 623
Sau96I GGNCC 2 cut(s) 219, 352
ScaI AGTACT 1 cut(s) 427
SchI GAGTC 1 cut(s) 146
ScrFI CCNGG 2 cut(s) 49, 203
SduI GDGCHC 2 cut(s) 317, 350
SetI ASST 7 cut(s) 120, 138, 304, 335, 350, 366, 542
SfaNI GCATC 1 cut(s) 297
SinI GGWCC 1 cut(s) 352
SmlI CTYRAG 1 cut(s) 297
SmoI CTYRAG 1 cut(s) 297
Sse9I AATT 1 cut(s) 661
SseBI AGGCCT 1 cut(s) 394
SsiI CCGC 3 cut(s) 72, 524, 592
SspI AATATT 1 cut(s) 647
SspMI CTAG 1 cut(s) 390
SstI GAGCTC 1 cut(s) 350
StuI AGGCCT 1 cut(s) 394
StyD4I CCNGG 2 cut(s) 47, 201
StyI CCWWGG 2 cut(s) 108, 696
TaaI ACNGT 2 cut(s) 325, 430
TasI AATT 1 cut(s) 661
TatI WGTACW 1 cut(s) 425
TfiI GAWTC 4 cut(s) 337, 379, 548, 611
Tru1I TTAA 1 cut(s) 402
Tru9I TTAA 1 cut(s) 402
TscAI CASTG 2 cut(s) 328, 454
TseI GCWGC 2 cut(s) 558, 617
TspDTI ATGAA 1 cut(s) 677
TspRI CASTG 2 cut(s) 328, 454
VpaK11BI GGWCC 1 cut(s) 352
XspI CTAG 1 cut(s) 390
ZrmI AGTACT 1 cut(s) 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.