Rh6DG104000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000739
Physical Location & Seq
Forward (+)
13161074 .. 13161406
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG104000.1

Sequence Viewer

Length: 333 bp
ATGTTTCTTCCCAAGTCGTTCGAACCGGGTCGATTGGATCTGGTTTTGGTACTGTTCGTCGATGCTGTCCGGGTCGCGGAGGATGGCGGCGATGTGGTGGCTGGTCTGGATGATTGGCTGGGAGCGATGGGATCGGTGATGGTTGTAGCAGCGTCAGCAGTCTTGACGCTGTCGGTGGAGGCTCTGTGCAGGCTAGGGTTTCCCATGGTTGGGAATTCTGGGCCTCAAGTTGGAGGTTGGGCCTCCTTGGTTATTTTGCTTTTCTTTTTAGTTTTAGTATTGGGTCTGCCTTCTTTTTTACCAAAGGAGGTTAGGTTAAGTTTCTTTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

11.69

Weight (kDa)

4.42

Isoelectric Point (pI)

22.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 77
AciI CCGC 2 cut(s) 77, 87
AclWI GGATC 2 cut(s) 45, 139
AcsI RAATTY 1 cut(s) 214
AfaI GTAC 1 cut(s) 51
AfiI CCNNNNNNNGG 4 cut(s) 76, 209, 210, 230
AlwI GGATC 2 cut(s) 45, 139
AoxI GGCC 2 cut(s) 221, 240
ApeKI GCWGC 1 cut(s) 149
ApoI RAATTY 1 cut(s) 214
AspS9I GGNCC 2 cut(s) 221, 240
AsuC2I CCSGG 2 cut(s) 27, 71
AsuHPI GGTGA 1 cut(s) 148
AsuII TTCGAA 1 cut(s) 21
BbvI GCAGC 1 cut(s) 161
BccI CCATC 3 cut(s) 77, 121, 133
BcnI CCSGG 2 cut(s) 27, 71
BfaI CTAG 1 cut(s) 194
BisI GCNGC 2 cut(s) 88, 150
BlsI GCNGC 2 cut(s) 89, 151
Bme1390I CCNGG 2 cut(s) 27, 71
BmgT120I GGNCC 2 cut(s) 221, 240
BmrFI CCNGG 2 cut(s) 27, 71
BmsI GCATC 1 cut(s) 52
Bpu14I TTCGAA 1 cut(s) 21
BpuEI CTTGAG 1 cut(s) 210
BpuMI CCSGG 2 cut(s) 27, 71
BsaJI CCNNGG 2 cut(s) 204, 246
BsaXI ACNNNNNCTCC 4 cut(s) 170, 200, 299, 329
Bsc4I CCNNNNNNNGG 4 cut(s) 76, 209, 210, 230
BseDI CCNNGG 2 cut(s) 204, 246
BseGI GGATG 2 cut(s) 88, 115
BseLI CCNNNNNNNGG 4 cut(s) 76, 209, 210, 230
BseXI GCAGC 1 cut(s) 161
BseYI CCCAGC 1 cut(s) 118
BsgI GTGCAG 1 cut(s) 208
Bsh1236I CGCG 1 cut(s) 77
BshFI GGCC 2 cut(s) 223, 242
BsiSI CCGG 2 cut(s) 26, 70
BslI CCNNNNNNNGG 4 cut(s) 76, 209, 210, 230
BsnI GGCC 2 cut(s) 223, 242
Bsp119I TTCGAA 1 cut(s) 21
Bsp143I GATC 2 cut(s) 37, 131
Bsp19I CCATGG 1 cut(s) 204
BspACI CCGC 2 cut(s) 77, 87
BspANI GGCC 2 cut(s) 223, 242
BspFNI CGCG 1 cut(s) 77
BspPI GGATC 2 cut(s) 45, 139
BspT104I TTCGAA 1 cut(s) 21
BssECI CCNNGG 2 cut(s) 204, 246
BssMI GATC 2 cut(s) 37, 131
BssT1I CCWWGG 2 cut(s) 204, 246
Bst4CI ACNGT 1 cut(s) 54
BstBI TTCGAA 1 cut(s) 21
BstC8I GCNNGC 1 cut(s) 191
BstDSI CCRYGG 1 cut(s) 204
BstF5I GGATG 2 cut(s) 88, 115
BstFNI CGCG 1 cut(s) 77
BstKTI GATC 2 cut(s) 40, 134
BstMBI GATC 2 cut(s) 37, 131
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstSCI CCNGG 2 cut(s) 25, 69
BstUI CGCG 1 cut(s) 77
BstV1I GCAGC 1 cut(s) 161
BstX2I RGATCY 1 cut(s) 37
BstYI RGATCY 1 cut(s) 37
BsuRI GGCC 2 cut(s) 223, 242
BtgI CCRYGG 1 cut(s) 204
BtgZI GCGATG 2 cut(s) 105, 140
BtsCI GGATG 2 cut(s) 88, 115
Cac8I GCNNGC 1 cut(s) 191
Cfr13I GGNCC 2 cut(s) 221, 240
CseI GACGC 2 cut(s) 141, 175
Csp6I GTAC 1 cut(s) 50
CviAII CATG 1 cut(s) 205
CviJI RGCY 6 cut(s) 101, 118, 182, 193, 223, 242
CviKI_1 RGCY 6 cut(s) 101, 118, 182, 193, 223, 242
CviQI GTAC 1 cut(s) 50
DpnI GATC 2 cut(s) 39, 133
DpnII GATC 2 cut(s) 37, 131
Eco130I CCWWGG 2 cut(s) 204, 246
EcoRI GAATTC 1 cut(s) 214
EcoT14I CCWWGG 2 cut(s) 204, 246
ErhI CCWWGG 2 cut(s) 204, 246
FaeI CATG 1 cut(s) 208
FaiI YATR 1 cut(s) 206
FatI CATG 1 cut(s) 204
Fnu4HI GCNGC 2 cut(s) 88, 150
FokI GGATG 2 cut(s) 95, 122
Fsp4HI GCNGC 2 cut(s) 88, 150
FspBI CTAG 1 cut(s) 194
GluI GCNGC 2 cut(s) 88, 150
GsaI CCCAGC 1 cut(s) 122
HaeIII GGCC 2 cut(s) 223, 242
HapII CCGG 2 cut(s) 26, 70
HgaI GACGC 2 cut(s) 141, 175
Hin1II CATG 1 cut(s) 208
HpaII CCGG 2 cut(s) 26, 70
HphI GGTGA 1 cut(s) 148
Hpy188III TCNNGA 2 cut(s) 107, 163
Hpy99I CGWCG 1 cut(s) 62
HpyAV CCTTC 1 cut(s) 300
HpyCH4III ACNGT 1 cut(s) 54
HpyCH4V TGCA 1 cut(s) 189
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
Hsp92II CATG 1 cut(s) 208
Kzo9I GATC 2 cut(s) 37, 131
LmnI GCTCC 1 cut(s) 122
LpnPI CCDG 8 cut(s) 26, 39, 83, 87, 92, 104, 175, 204
Lsp1109I GCAGC 1 cut(s) 161
LweI GCATC 1 cut(s) 52
MaeI CTAG 1 cut(s) 194
MalI GATC 2 cut(s) 39, 133
MboI GATC 2 cut(s) 37, 131
MflI RGATCY 1 cut(s) 37
MluCI AATT 1 cut(s) 214
MmeI TCCRAC 1 cut(s) 211
MnlI CCTC 6 cut(s) 73, 172, 227, 234, 253, 301
MseI TTAA 1 cut(s) 317
MspI CCGG 2 cut(s) 26, 70
MspR9I CCNGG 2 cut(s) 27, 71
MvnI CGCG 1 cut(s) 77
MwoI GCNNNNNNNGC 1 cut(s) 155
NciI CCSGG 2 cut(s) 27, 71
NcoI CCATGG 1 cut(s) 204
NdeII GATC 2 cut(s) 37, 131
NlaIII CATG 1 cut(s) 208
NspV TTCGAA 1 cut(s) 21
PflFI GACNNNGTC 1 cut(s) 169
PkrI GCNGC 2 cut(s) 89, 151
PspFI CCCAGC 1 cut(s) 118
PspPI GGNCC 2 cut(s) 221, 240
PsuI RGATCY 1 cut(s) 37
PsyI GACNNNGTC 1 cut(s) 169
RsaI GTAC 1 cut(s) 51
RsaNI GTAC 1 cut(s) 50
SaqAI TTAA 1 cut(s) 317
SatI GCNGC 2 cut(s) 88, 150
Sau3AI GATC 2 cut(s) 37, 131
Sau96I GGNCC 2 cut(s) 221, 240
ScrFI CCNGG 2 cut(s) 27, 71
SetI ASST 3 cut(s) 238, 312, 317
SfaNI GCATC 1 cut(s) 52
SfuI TTCGAA 1 cut(s) 21
SmlI CTYRAG 1 cut(s) 225
SmoI CTYRAG 1 cut(s) 225
Sse9I AATT 1 cut(s) 214
SsiI CCGC 2 cut(s) 77, 87
SspMI CTAG 1 cut(s) 194
StyD4I CCNGG 2 cut(s) 25, 69
StyI CCWWGG 2 cut(s) 204, 246
TaaI ACNGT 1 cut(s) 54
TaqI TCGA 3 cut(s) 21, 31, 60
TasI AATT 1 cut(s) 214
TauI GCSGC 1 cut(s) 90
Tru1I TTAA 1 cut(s) 317
Tru9I TTAA 1 cut(s) 317
TseI GCWGC 1 cut(s) 149
Tth111I GACNNNGTC 1 cut(s) 169
XapI RAATTY 1 cut(s) 214
XspI CTAG 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.