Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000739

Physical Location & Seq

Genomic Coordinates Forward (+)

10257563 .. 10257928

Gene Structure 366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG116700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGAGGCTGCGTCGGCGATGTGGCATGGTTTCAAGTCTGGCAGCGATGTGGTTTTTTCTGGGTGGCTCGTTGATGGTGGAAGGAACGAGAGCGAGTCTTTTGGCTATTTCATGTTTCTACCCACGTCGTTCGAATCGGGTGAATTGGATCTGGCTTGGGTAGTGTTGGTCGATGCTTTCCGGGTCGCTGAGGATGGCGGCGATGTGGTGGCTGGTCTGGACAATTGGCTGGGAGTTATGGGATCGGTGATGGCAGTAGTAGCGCCGACGGTCATGTTGCAGTCGGTGGAGGCTCTGTGCAGGCTAGGGTTTCCAATGGTTGGGCATTCTGGGCCTCAAGTTGGAGGTTGGGCCTTCCTTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

121

Amino Acids

12.85

Weight (kDa)

4.14

Isoelectric Point (pI)

30.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35900 AT4G35900
fragaria_vesca	FvH4_1g11270 FvH4_1g11270 FvH4_2g38080 FvH4_2g38080
malus_domestica	MD02G1125100.v1.1 MD15G1008300.v1.1 MD15G1240800.v1.1
prunus_persica	Prupe.1G361100_v2.0.a1 Prupe.7G173300_v2.0.a1
pyrus_communis	pycom02g09770 pycom08g00780 pycom15g00670 pycom15g21240
rosa_chinensis	RchiOBHm_Chr2g0098731 RchiOBHm_Chr5g0020811 RchiOBHm_Chr5g0069801 RchiOBHm_Chr6g0303481
rosa_laevigata	RLG00000001084 RLG00000001969 RLG00000004672 RLG00000011081 RLG00000015050 RLG00000015656 RLG00000016824 RLG00000024869 RLG00000030190 RLG00000033969 RLG00000035356
rosa_multiflora	Rmu_sc0002776.1_g000024 Rmu_ssc0000114.1_g000047
rosa_roxburghii	Rroxscaffold_2G00107580 Rroxscaffold_2G00143780 Rroxscaffold_7G00164710 Rroxscaffold_7G00172730
rosa_rugosa	Rorug02G0074200 Rorug06G0321600 Rorug06G0321700
rosa_samantha	Rh1AG062500 Rh1BG080000 Rh1DG103800 Rh2AG122100 Rh2BG125600 Rh2CG116700 Rh2CG126700 Rh2CG345200 Rh2DG127700 Rh3DG072100 Rh5CG499500 Rh6AG436100 Rh6BG117000 Rh6BG117100 Rh6BG117200 Rh6BG467400 Rh6CG115500 Rh6CG115600 Rh6CG198000 Rh6CG448100 Rh6DG104000 Rh6DG434700 Rh7AG017700 Rh7AG193200 Rh7AG263200 Rh7BG017300 Rh7BG449800 Rh7DG018000 Rh7DG269900
rosa_wichuraiana	Rw0G004200 Rw5G015480 Rw6G037740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	320
AciI	CCGC	1 cut(s)	198
AclWI	GGATC	2 cut(s)	156, 250
AfiI	CCNNNNNNNGG	2 cut(s)	320, 341
AgsI	TTSAA	1 cut(s)	34
AjiI	CACGTC	1 cut(s)	126
AlwI	GGATC	2 cut(s)	156, 250
AoxI	GGCC	2 cut(s)	332, 351
ApeKI	GCWGC	2 cut(s)	8, 42
AspLEI	GCGC	1 cut(s)	265
AspS9I	GGNCC	2 cut(s)	332, 351
AsuC2I	CCSGG	1 cut(s)	182
AsuHPI	GGTGA	2 cut(s)	152, 259
AsuII	TTCGAA	1 cut(s)	132
BbvCI	CCTCAGC	1 cut(s)	189
BbvI	GCAGC	1 cut(s)	54
BccI	CCATC	3 cut(s)	68, 188, 244
BcnI	CCSGG	1 cut(s)	182
BfaI	CTAG	1 cut(s)	305
BfoI	RGCGCY	1 cut(s)	266
BisI	GCNGC	3 cut(s)	9, 43, 199
BlsI	GCNGC	3 cut(s)	10, 44, 200
Bme1390I	CCNGG	1 cut(s)	182
BmgBI	CACGTC	1 cut(s)	126
BmgT120I	GGNCC	2 cut(s)	332, 351
BmrFI	CCNGG	1 cut(s)	182
BmsI	GCATC	1 cut(s)	163
Bpu10I	CCTNAGC	1 cut(s)	189
Bpu14I	TTCGAA	1 cut(s)	132
BpuEI	CTTGAG	1 cut(s)	321
BpuMI	CCSGG	1 cut(s)	182
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 281, 311
Bsc4I	CCNNNNNNNGG	2 cut(s)	320, 341
BseGI	GGATG	1 cut(s)	199
BseLI	CCNNNNNNNGG	2 cut(s)	320, 341
BseMII	CTCAG	1 cut(s)	180
BseXI	GCAGC	1 cut(s)	54
BseYI	CCCAGC	1 cut(s)	229
BsgI	GTGCAG	1 cut(s)	319
BshFI	GGCC	2 cut(s)	334, 353
BsiSI	CCGG	1 cut(s)	181
BslI	CCNNNNNNNGG	2 cut(s)	320, 341
BsmI	GAATGC	1 cut(s)	325
BsnI	GGCC	2 cut(s)	334, 353
Bsp119I	TTCGAA	1 cut(s)	132
Bsp143I	GATC	2 cut(s)	148, 242
BspACI	CCGC	1 cut(s)	198
BspANI	GGCC	2 cut(s)	334, 353
BspCNI	CTCAG	1 cut(s)	181
BspPI	GGATC	2 cut(s)	156, 250
BspT104I	TTCGAA	1 cut(s)	132
BssMI	GATC	2 cut(s)	148, 242
Bst4CI	ACNGT	1 cut(s)	271
BstBI	TTCGAA	1 cut(s)	132
BstC8I	GCNNGC	1 cut(s)	302
BstDEI	CTNAG	1 cut(s)	189
BstF5I	GGATG	1 cut(s)	199
BstH2I	RGCGCY	1 cut(s)	266
BstHHI	GCGC	1 cut(s)	265
BstKTI	GATC	2 cut(s)	151, 245
BstMBI	GATC	2 cut(s)	148, 242
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 260, 331
BstSCI	CCNGG	1 cut(s)	180
BstV1I	GCAGC	1 cut(s)	54
BstX2I	RGATCY	1 cut(s)	148
BstYI	RGATCY	1 cut(s)	148
BsuRI	GGCC	2 cut(s)	334, 353
BtgZI	GCGATG	3 cut(s)	32, 60, 216
BtrI	CACGTC	1 cut(s)	126
BtsCI	GGATG	1 cut(s)	199
Cac8I	GCNNGC	1 cut(s)	302
CfoI	GCGC	1 cut(s)	265
Cfr13I	GGNCC	2 cut(s)	332, 351
CviAII	CATG	3 cut(s)	26, 112, 274
DdeI	CTNAG	1 cut(s)	189
DpnI	GATC	2 cut(s)	150, 244
DpnII	GATC	2 cut(s)	148, 242
FaeI	CATG	3 cut(s)	29, 115, 277
FaiI	YATR	4 cut(s)	27, 113, 239, 275
FatI	CATG	3 cut(s)	25, 111, 273
Fnu4HI	GCNGC	3 cut(s)	9, 43, 199
FokI	GGATG	1 cut(s)	206
Fsp4HI	GCNGC	3 cut(s)	9, 43, 199
FspBI	CTAG	1 cut(s)	305
GlaI	GCGC	1 cut(s)	264
GluI	GCNGC	3 cut(s)	9, 43, 199
GsaI	CCCAGC	1 cut(s)	233
HaeII	RGCGCY	1 cut(s)	266
HaeIII	GGCC	2 cut(s)	334, 353
HapII	CCGG	1 cut(s)	181
HhaI	GCGC	1 cut(s)	265
Hin1II	CATG	3 cut(s)	29, 115, 277
Hin6I	GCGC	1 cut(s)	263
HinP1I	GCGC	1 cut(s)	263
HinfI	GANTC	2 cut(s)	95, 134
HpaII	CCGG	1 cut(s)	181
HphI	GGTGA	2 cut(s)	152, 259
Hpy188III	TCNNGA	1 cut(s)	218
Hpy99I	CGWCG	3 cut(s)	16, 130, 271
HpyAV	CCTTC	2 cut(s)	75, 364
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4IV	ACGT	1 cut(s)	125
HpyCH4V	TGCA	2 cut(s)	280, 300
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 260, 331
HpyF3I	CTNAG	1 cut(s)	189
HpySE526I	ACGT	1 cut(s)	125
Hsp92II	CATG	3 cut(s)	29, 115, 277
HspAI	GCGC	1 cut(s)	263
Kzo9I	GATC	2 cut(s)	148, 242
LpnPI	CCDG	9 cut(s)	24, 45, 137, 194, 198, 203, 215, 286, 315
Lsp1109I	GCAGC	1 cut(s)	54
LweI	GCATC	1 cut(s)	163
MaeI	CTAG	1 cut(s)	305
MaeII	ACGT	1 cut(s)	125
MalI	GATC	2 cut(s)	150, 244
MboI	GATC	2 cut(s)	148, 242
MfeI	CAATTG	1 cut(s)	223
MflI	RGATCY	1 cut(s)	148
MluCI	AATT	2 cut(s)	143, 223
MlyI	GAGTC	1 cut(s)	104
MmeI	TCCRAC	1 cut(s)	322
MnlI	CCTC	4 cut(s)	184, 283, 338, 345
MspI	CCGG	1 cut(s)	181
MspR9I	CCNGG	1 cut(s)	182
MunI	CAATTG	1 cut(s)	223
Mva1269I	GAATGC	1 cut(s)	325
MwoI	GCNNNNNNNGC	3 cut(s)	14, 260, 331
NciI	CCSGG	1 cut(s)	182
NdeII	GATC	2 cut(s)	148, 242
NlaIII	CATG	3 cut(s)	29, 115, 277
NspV	TTCGAA	1 cut(s)	132
PctI	GAATGC	1 cut(s)	325
PfeI	GAWTC	1 cut(s)	134
PflMI	CCANNNNNTGG	1 cut(s)	320
PkrI	GCNGC	3 cut(s)	10, 44, 200
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
PspFI	CCCAGC	1 cut(s)	229
PspPI	GGNCC	2 cut(s)	332, 351
PsuI	RGATCY	1 cut(s)	148
SatI	GCNGC	3 cut(s)	9, 43, 199
Sau3AI	GATC	2 cut(s)	148, 242
Sau96I	GGNCC	2 cut(s)	332, 351
SchI	GAGTC	1 cut(s)	104
ScrFI	CCNGG	1 cut(s)	182
SetI	ASST	2 cut(s)	128, 349
SfaNI	GCATC	1 cut(s)	163
SfuI	TTCGAA	1 cut(s)	132
SmlI	CTYRAG	1 cut(s)	336
SmoI	CTYRAG	1 cut(s)	336
Sse9I	AATT	2 cut(s)	143, 223
SsiI	CCGC	1 cut(s)	198
SspMI	CTAG	1 cut(s)	305
StyD4I	CCNGG	1 cut(s)	180
TaaI	ACNGT	1 cut(s)	271
TaiI	ACGT	1 cut(s)	128
TaqI	TCGA	2 cut(s)	132, 171
TasI	AATT	2 cut(s)	143, 223
TauI	GCSGC	1 cut(s)	201
TfiI	GAWTC	1 cut(s)	134
TseI	GCWGC	2 cut(s)	8, 42
TspDTI	ATGAA	1 cut(s)	100
Van91I	CCANNNNNTGG	1 cut(s)	320
XspI	CTAG	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.