Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000739

Physical Location & Seq

Genomic Coordinates Forward (+)

13241648 .. 13242782

Gene Structure 1135 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG115600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGTCTCTCTCTCTGACTCTCTCACGAGACAATGTCTGCTGGCGGCTATCTAACCCTAGTGCCGGAGGTAAACCTATGATCGAAAAGGTGGGATTTTCTCTTCTCTCTGATCGCTCTTCCGGTGAAGGCGGTGGGCTTCGGCTTCATCGAGTCTTTGAGTTTGCTGCATCTGGTCATCTTCTGGTGACCGGAGGCACCTTTGCTTTATGGCCGGGGGGATCTCTCGGTGGTGGTGCTCTAATGGCAGCTGCGAAGGCGGTGCGGCATGGCTTCGAGTTTGGCAGCGATGTGGCTTTTTCTGGGCGGCTCGTTGATGGTGGAAGGAATGAGAGCGAGCCTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

114

Amino Acids

11.81

Weight (kDa)

8.0

Isoelectric Point (pI)

40.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35900 AT4G35900
fragaria_vesca	FvH4_1g11270 FvH4_1g11270 FvH4_2g38080 FvH4_2g38080
malus_domestica	MD02G1125100.v1.1 MD15G1008300.v1.1 MD15G1240800.v1.1
prunus_persica	Prupe.1G361100_v2.0.a1 Prupe.7G173300_v2.0.a1
pyrus_communis	pycom02g09770 pycom08g00780 pycom15g00670 pycom15g21240
rosa_chinensis	RchiOBHm_Chr2g0098731 RchiOBHm_Chr5g0020811 RchiOBHm_Chr5g0069801 RchiOBHm_Chr6g0303481
rosa_laevigata	RLG00000001084 RLG00000001969 RLG00000004672 RLG00000011081 RLG00000015050 RLG00000015656 RLG00000016824 RLG00000024869 RLG00000030190 RLG00000033969 RLG00000035356
rosa_multiflora	Rmu_sc0002776.1_g000024 Rmu_ssc0000114.1_g000047
rosa_roxburghii	Rroxscaffold_2G00107580 Rroxscaffold_2G00143780 Rroxscaffold_7G00164710 Rroxscaffold_7G00172730
rosa_rugosa	Rorug02G0074200 Rorug06G0321600 Rorug06G0321700
rosa_samantha	Rh1AG062500 Rh1BG080000 Rh1DG103800 Rh2AG122100 Rh2BG125600 Rh2CG116700 Rh2CG126700 Rh2CG345200 Rh2DG127700 Rh3DG072100 Rh5CG499500 Rh6AG436100 Rh6BG117000 Rh6BG117100 Rh6BG117200 Rh6BG467400 Rh6CG115500 Rh6CG115600 Rh6CG198000 Rh6CG448100 Rh6DG104000 Rh6DG434700 Rh7AG017700 Rh7AG193200 Rh7AG263200 Rh7BG017300 Rh7BG449800 Rh7DG018000 Rh7DG269900
rosa_wichuraiana	Rw0G004200 Rw5G015480 Rw6G037740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	194
AciI	CCGC	5 cut(s)	43, 129, 257, 262, 304
AclWI	GGATC	1 cut(s)	226
AcoI	YGGCCR	1 cut(s)	209
AfiI	CCNNNNNNNGG	1 cut(s)	62
AluBI	AGCT	1 cut(s)	248
AluI	AGCT	1 cut(s)	248
Alw21I	GWGCWC	1 cut(s)	238
Alw26I	GTCTC	2 cut(s)	9, 21
AlwI	GGATC	1 cut(s)	226
AoxI	GGCC	1 cut(s)	209
ApeKI	GCWGC	4 cut(s)	164, 245, 248, 282
AsuC2I	CCSGG	1 cut(s)	213
AsuHPI	GGTGA	2 cut(s)	134, 196
BanI	GGYRCC	1 cut(s)	194
BauI	CACGAG	1 cut(s)	24
Bbv12I	GWGCWC	1 cut(s)	238
BbvI	GCAGC	4 cut(s)	151, 235, 257, 294
BccI	CCATC	1 cut(s)	308
BcgI	CGANNNNNNTGC	2 cut(s)	241, 275
BcnI	CCSGG	1 cut(s)	213
BcoDI	GTCTC	2 cut(s)	9, 21
BfaI	CTAG	1 cut(s)	57
BisI	GCNGC	7 cut(s)	44, 165, 246, 249, 263, 283, 305
BlsI	GCNGC	7 cut(s)	45, 166, 247, 250, 264, 284, 306
Bme1390I	CCNGG	1 cut(s)	213
BmiI	GGNNCC	1 cut(s)	196
BmrFI	CCNGG	1 cut(s)	213
BmsI	GCATC	1 cut(s)	176
BpuMI	CCSGG	1 cut(s)	213
BsaJI	CCNNGG	1 cut(s)	212
BsaWI	WCCGGW	2 cut(s)	119, 188
Bsc4I	CCNNNNNNNGG	1 cut(s)	62
BseDI	CCNNGG	1 cut(s)	212
BseLI	CCNNNNNNNGG	1 cut(s)	62
BseXI	GCAGC	4 cut(s)	151, 235, 257, 294
BshFI	GGCC	1 cut(s)	211
BshNI	GGYRCC	1 cut(s)	194
BsiHKAI	GWGCWC	1 cut(s)	238
BsiSI	CCGG	4 cut(s)	63, 120, 189, 212
BslI	CCNNNNNNNGG	1 cut(s)	62
BsmAI	GTCTC	2 cut(s)	9, 21
BsnI	GGCC	1 cut(s)	211
Bsp1286I	GDGCHC	1 cut(s)	238
Bsp143I	GATC	3 cut(s)	78, 109, 218
BspACI	CCGC	5 cut(s)	43, 129, 257, 262, 304
BspANI	GGCC	1 cut(s)	211
BspLI	GGNNCC	1 cut(s)	196
BspPI	GGATC	1 cut(s)	226
BspQI	GCTCTTC	1 cut(s)	121
BspT107I	GGYRCC	1 cut(s)	194
BssECI	CCNNGG	1 cut(s)	212
BssMI	GATC	3 cut(s)	78, 109, 218
BssSI	CACGAG	1 cut(s)	24
Bst2BI	CACGAG	1 cut(s)	24
Bst6I	CTCTTC	2 cut(s)	105, 121
BstC8I	GCNNGC	2 cut(s)	41, 335
BstEII	GGTNACC	1 cut(s)	184
BstKTI	GATC	3 cut(s)	81, 112, 221
BstMAI	GTCTC	2 cut(s)	9, 21
BstMBI	GATC	3 cut(s)	78, 109, 218
BstMWI	GCNNNNNNNGC	2 cut(s)	242, 254
BstPI	GGTNACC	1 cut(s)	184
BstSCI	CCNGG	1 cut(s)	211
BstV1I	GCAGC	4 cut(s)	151, 235, 257, 294
BstX2I	RGATCY	1 cut(s)	218
BstYI	RGATCY	1 cut(s)	218
BsuRI	GGCC	1 cut(s)	211
BtgZI	GCGATG	1 cut(s)	300
Cac8I	GCNNGC	2 cut(s)	41, 335
CviAII	CATG	1 cut(s)	266
CviJI	RGCY	9 cut(s)	46, 136, 142, 211, 248, 270, 293, 307, 337
CviKI_1	RGCY	9 cut(s)	46, 136, 142, 211, 248, 270, 293, 307, 337
DpnI	GATC	3 cut(s)	80, 111, 220
DpnII	GATC	3 cut(s)	78, 109, 218
EaeI	YGGCCR	1 cut(s)	209
Eam1104I	CTCTTC	2 cut(s)	105, 121
EarI	CTCTTC	2 cut(s)	105, 121
Eco91I	GGTNACC	1 cut(s)	184
EcoO65I	GGTNACC	1 cut(s)	184
FaeI	CATG	1 cut(s)	269
FaiI	YATR	4 cut(s)	77, 208, 267, 343
FatI	CATG	1 cut(s)	265
Fnu4HI	GCNGC	7 cut(s)	44, 165, 246, 249, 263, 283, 305
Fsp4HI	GCNGC	7 cut(s)	44, 165, 246, 249, 263, 283, 305
FspBI	CTAG	1 cut(s)	57
GluI	GCNGC	7 cut(s)	44, 165, 246, 249, 263, 283, 305
HaeIII	GGCC	1 cut(s)	211
HapII	CCGG	4 cut(s)	63, 120, 189, 212
Hin1II	CATG	1 cut(s)	269
HinfI	GANTC	2 cut(s)	16, 150
HpaII	CCGG	4 cut(s)	63, 120, 189, 212
HphI	GGTGA	2 cut(s)	134, 196
Hpy166II	GTNNAC	1 cut(s)	71
Hpy188I	TCNGA	2 cut(s)	15, 109
Hpy188III	TCNNGA	1 cut(s)	24
Hpy8I	GTNNAC	1 cut(s)	71
HpyAV	CCTTC	3 cut(s)	119, 247, 315
HpyCH4V	TGCA	1 cut(s)	167
HpyF10VI	GCNNNNNNNGC	2 cut(s)	242, 254
Hsp92II	CATG	1 cut(s)	269
Kzo9I	GATC	3 cut(s)	78, 109, 218
LguI	GCTCTTC	1 cut(s)	121
LpnPI	CCDG	8 cut(s)	25, 76, 133, 156, 167, 202, 225, 285
Lsp1109I	GCAGC	4 cut(s)	151, 235, 257, 294
LweI	GCATC	1 cut(s)	176
MaeI	CTAG	1 cut(s)	57
MaeIII	GTNAC	1 cut(s)	184
MalI	GATC	3 cut(s)	80, 111, 220
MboI	GATC	3 cut(s)	78, 109, 218
MboII	GAAGA	3 cut(s)	92, 108, 170
MflI	RGATCY	1 cut(s)	218
MhlI	GDGCHC	1 cut(s)	238
MlyI	GAGTC	2 cut(s)	10, 159
MnlI	CCTC	2 cut(s)	59, 185
MspA1I	CMGCKG	1 cut(s)	248
MspI	CCGG	4 cut(s)	63, 120, 189, 212
MspR9I	CCNGG	1 cut(s)	213
MwoI	GCNNNNNNNGC	2 cut(s)	242, 254
NciI	CCSGG	1 cut(s)	213
NdeII	GATC	3 cut(s)	78, 109, 218
NlaIII	CATG	1 cut(s)	269
NlaIV	GGNNCC	1 cut(s)	196
NmuCI	GTSAC	1 cut(s)	184
PciSI	GCTCTTC	1 cut(s)	121
PcsI	WCGNNNNNNNCGW	1 cut(s)	145
PflFI	GACNNNGTC	1 cut(s)	32
PkrI	GCNGC	7 cut(s)	45, 166, 247, 250, 264, 284, 306
PleI	GAGTC	2 cut(s)	10, 158
PpsI	GAGTC	2 cut(s)	10, 158
PspEI	GGTNACC	1 cut(s)	184
PspN4I	GGNNCC	1 cut(s)	196
PsuI	RGATCY	1 cut(s)	218
PsyI	GACNNNGTC	1 cut(s)	32
PvuII	CAGCTG	1 cut(s)	248
SapI	GCTCTTC	1 cut(s)	121
SatI	GCNGC	7 cut(s)	44, 165, 246, 249, 263, 283, 305
Sau3AI	GATC	3 cut(s)	78, 109, 218
SchI	GAGTC	2 cut(s)	10, 159
ScrFI	CCNGG	1 cut(s)	213
SduI	GDGCHC	1 cut(s)	238
SetI	ASST	5 cut(s)	70, 76, 90, 200, 250
SfaNI	GCATC	1 cut(s)	176
SsiI	CCGC	5 cut(s)	43, 129, 257, 262, 304
SspMI	CTAG	1 cut(s)	57
StyD4I	CCNGG	1 cut(s)	211
TaqI	TCGA	3 cut(s)	81, 148, 273
TauI	GCSGC	3 cut(s)	46, 265, 307
TseFI	GTSAC	1 cut(s)	184
TseI	GCWGC	4 cut(s)	164, 245, 248, 282
Tsp45I	GTSAC	1 cut(s)	184
TspDTI	ATGAA	1 cut(s)	134
Tth111I	GACNNNGTC	1 cut(s)	32
XspI	CTAG	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.