Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000739

Physical Location & Seq

Genomic Coordinates Forward (+)

27038563 .. 27042963

Gene Structure 4401 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG263200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGTCTCTCTCTCTGACTCTCTCACAAGAGAATGTCCGCTGTCGGCTATCTAACGCTAGTGTCGGCGGTAAACCTACGATCGGACAGGTGGGATTTTCTCTTCTCTCTGATCGCTCTTCCGGGGAAGGTGGTGGACTTCGGCTTCATCGAGTCTCTGCGTTTGTTGCATATGGTCATCTTCTGGTGCCCGGAGGCGCCTTTGCCTTATGGTCTGAGGGATCTCTCGGTGGTGGTGCTCTGATGGCGGCTGCAATGGTGGTGCGGCATGGTTTCGAGTCTGGCAGCAATGTGGCTTTTTCTGGGCTGCTCGTTGATGGTGGAAGGAATGACAGCGAGCCTTTTGGTTGTTTCCTGTTTCTTCCCACGTCGTTAGAACTGGGTGAATTGGATCTGGTTTTGGTACTGTTCGTCGATGCTGTCCGGGTTGCGGAGGATGGTGGCGATGTGGTGGCTGGTCTGGACGATTGGTTGGGAGCGATGGGATCGGTGATGGTCGTAGCAGCGTCGGCGGTCTTGATGCTGTTAGTCGTTTGCAGTGGTGGCAATGACTGTGGCGGCAGTGCTAATGGTGTTCCTGATGAGTGGGACGGTTGCTTTGATGCTAAAGTTTCATGGGAGAAGAGTGGTTGGGTTCCACACAAGTTGTTGGGCCTGGGTCAGAAAAATCCTCAAGCTTATTGCAAACCACCGGTTGTTGTTAAGCTGAACTGGAATCCCAGAGGCAAGCCTTGTTCAAGCAAAGTCAGATCAAATAAGGAGCAGATAAGGATAGTGAAGGAGGCATTGCACTTGTCTACGGTTCCCTCTAGTGTTGCGTGCCGCGAAGTGGAGCAGAAGAGGGTTCTAAAGTTCTGCAAGTCATGCATAGAGCAAGAGAAGGCTCATGGATACATTTTGGGCGAGGTTCTTATAGAAGAGATGAGAGAAATTGCACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_22 Cdc6_C

Protein Analysis

312

Amino Acids

33.03

Weight (kDa)

5.91

Isoelectric Point (pI)

36.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35900 AT4G35900
fragaria_vesca	FvH4_1g11270 FvH4_1g11270 FvH4_2g38080 FvH4_2g38080
malus_domestica	MD02G1125100.v1.1 MD15G1008300.v1.1 MD15G1240800.v1.1
prunus_persica	Prupe.1G361100_v2.0.a1 Prupe.7G173300_v2.0.a1
pyrus_communis	pycom02g09770 pycom08g00780 pycom15g00670 pycom15g21240
rosa_chinensis	RchiOBHm_Chr2g0098731 RchiOBHm_Chr5g0020811 RchiOBHm_Chr5g0069801 RchiOBHm_Chr6g0303481
rosa_laevigata	RLG00000001084 RLG00000001969 RLG00000004672 RLG00000011081 RLG00000015050 RLG00000015656 RLG00000016824 RLG00000024869 RLG00000030190 RLG00000033969 RLG00000035356
rosa_multiflora	Rmu_sc0002776.1_g000024 Rmu_ssc0000114.1_g000047
rosa_roxburghii	Rroxscaffold_2G00107580 Rroxscaffold_2G00143780 Rroxscaffold_7G00164710 Rroxscaffold_7G00172730
rosa_rugosa	Rorug02G0074200 Rorug06G0321600 Rorug06G0321700
rosa_samantha	Rh1AG062500 Rh1BG080000 Rh1DG103800 Rh2AG122100 Rh2BG125600 Rh2CG116700 Rh2CG126700 Rh2CG345200 Rh2DG127700 Rh3DG072100 Rh5CG499500 Rh6AG436100 Rh6BG117000 Rh6BG117100 Rh6BG117200 Rh6BG467400 Rh6CG115500 Rh6CG115600 Rh6CG198000 Rh6CG448100 Rh6DG104000 Rh6DG434700 Rh7AG017700 Rh7AG193200 Rh7AG263200 Rh7BG017300 Rh7BG449800 Rh7DG018000 Rh7DG269900
rosa_wichuraiana	Rw0G004200 Rw5G015480 Rw6G037740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	184, 194
AccI	GTMKAC	1 cut(s)	794
AccII	CGCG	1 cut(s)	822
AciI	CCGC	8 cut(s)	37, 66, 245, 262, 428, 509, 555, 820
AclWI	GGATC	3 cut(s)	226, 396, 490
AcyI	GRCGYC	1 cut(s)	195
AfaI	GTAC	1 cut(s)	402
AfiI	CCNNNNNNNGG	3 cut(s)	80, 427, 826
AgeI	ACCGGT	1 cut(s)	688
AgsI	TTSAA	1 cut(s)	735
AjiI	CACGTC	1 cut(s)	366
AjnI	CCWGG	1 cut(s)	651
AluBI	AGCT	2 cut(s)	674, 703
AluI	AGCT	2 cut(s)	674, 703
Alw21I	GWGCWC	1 cut(s)	238
Alw26I	GTCTC	2 cut(s)	9, 157
AlwI	GGATC	3 cut(s)	226, 396, 490
AoxI	GGCC	1 cut(s)	649
ApeKI	GCWGC	4 cut(s)	248, 282, 304, 500
ArsI	GACNNNNNNTTYG	2 cut(s)	578, 610
AsiGI	ACCGGT	1 cut(s)	688
AspLEI	GCGC	1 cut(s)	197
AspS9I	GGNCC	1 cut(s)	649
AsuC2I	CCSGG	3 cut(s)	121, 189, 422
AsuHPI	GGTGA	2 cut(s)	392, 499
BaeGI	GKGCMC	1 cut(s)	189
BanI	GGYRCC	2 cut(s)	184, 194
Bbv12I	GWGCWC	1 cut(s)	238
BbvI	GCAGC	4 cut(s)	235, 291, 294, 512
BccI	CCATC	5 cut(s)	235, 308, 428, 472, 484
BciT130I	CCWGG	1 cut(s)	653
BciVI	GTATCC	1 cut(s)	881
BcnI	CCSGG	3 cut(s)	121, 189, 422
BcoDI	GTCTC	2 cut(s)	9, 157
BfaI	CTAG	2 cut(s)	57, 807
BfoI	RGCGCY	1 cut(s)	198
BfuI	GTATCC	1 cut(s)	881
BisI	GCNGC	8 cut(s)	246, 249, 263, 283, 305, 501, 556, 820
BlsI	GCNGC	8 cut(s)	247, 250, 264, 284, 306, 502, 557, 821
Bme1390I	CCNGG	4 cut(s)	121, 189, 422, 653
BmgBI	CACGTC	1 cut(s)	366
BmgT120I	GGNCC	1 cut(s)	649
BmiI	GGNNCC	4 cut(s)	186, 196, 633, 801
BmrFI	CCNGG	4 cut(s)	121, 189, 422, 653
BmrI	ACTGGG	1 cut(s)	386
BmsI	GCATC	3 cut(s)	403, 507, 589
BmuI	ACTGGG	1 cut(s)	386
BpuEI	CTTGAG	1 cut(s)	654
BpuMI	CCSGG	3 cut(s)	121, 189, 422
BsaHI	GRCGYC	1 cut(s)	195
BsaJI	CCNNGG	2 cut(s)	120, 652
BsaWI	WCCGGW	1 cut(s)	688
Bsc4I	CCNNNNNNNGG	3 cut(s)	80, 427, 826
Bse118I	RCCGGY	1 cut(s)	688
Bse1I	ACTGG	2 cut(s)	381, 713
Bse3DI	GCAATG	4 cut(s)	258, 292, 550, 782
BseBI	CCWGG	1 cut(s)	653
BseDI	CCNNGG	2 cut(s)	120, 652
BseGI	GGATG	1 cut(s)	439
BseLI	CCNNNNNNNGG	3 cut(s)	80, 427, 826
BseMI	GCAATG	4 cut(s)	258, 292, 550, 782
BseMII	CTCAG	1 cut(s)	204
BseNI	ACTGG	2 cut(s)	381, 713
BseSI	GKGCMC	1 cut(s)	189
BseXI	GCAGC	4 cut(s)	235, 291, 294, 512
Bsh1236I	CGCG	1 cut(s)	822
Bsh1285I	CGRYCG	1 cut(s)	81
BshFI	GGCC	1 cut(s)	651
BshNI	GGYRCC	2 cut(s)	184, 194
BshTI	ACCGGT	1 cut(s)	688
BsiEI	CGRYCG	1 cut(s)	81
BsiHKAI	GWGCWC	1 cut(s)	238
BsiSI	CCGG	4 cut(s)	120, 189, 421, 689
BslFI	GGGAC	1 cut(s)	599
BslI	CCNNNNNNNGG	3 cut(s)	80, 427, 826
BsmAI	GTCTC	2 cut(s)	9, 157
BsmFI	GGGAC	1 cut(s)	599
BsnI	GGCC	1 cut(s)	651
Bsp1286I	GDGCHC	2 cut(s)	189, 238
Bsp143I	GATC	6 cut(s)	78, 109, 218, 388, 482, 746
BspACI	CCGC	8 cut(s)	37, 66, 245, 262, 428, 509, 555, 820
BspANI	GGCC	1 cut(s)	651
BspCNI	CTCAG	1 cut(s)	205
BspFNI	CGCG	1 cut(s)	822
BspLI	GGNNCC	4 cut(s)	186, 196, 633, 801
BspPI	GGATC	3 cut(s)	226, 396, 490
BspQI	GCTCTTC	1 cut(s)	121
BspT107I	GGYRCC	2 cut(s)	184, 194
BsrDI	GCAATG	4 cut(s)	258, 292, 550, 782
BsrFI	RCCGGY	1 cut(s)	688
BsrI	ACTGG	2 cut(s)	381, 713
BssAI	RCCGGY	1 cut(s)	688
BssECI	CCNNGG	2 cut(s)	120, 652
BssMI	GATC	6 cut(s)	78, 109, 218, 388, 482, 746
BssNI	GRCGYC	1 cut(s)	195
Bst2UI	CCWGG	1 cut(s)	653
Bst4CI	ACNGT	4 cut(s)	405, 551, 590, 799
Bst6I	CTCTTC	5 cut(s)	105, 121, 614, 830, 909
BstACI	GRCGYC	1 cut(s)	195
BstAPI	GCANNNNNTGC	1 cut(s)	861
BstC8I	GCNNGC	3 cut(s)	335, 725, 817
BstDEI	CTNAG	1 cut(s)	213
BstF5I	GGATG	1 cut(s)	439
BstFNI	CGCG	1 cut(s)	822
BstH2I	RGCGCY	1 cut(s)	198
BstHHI	GCGC	1 cut(s)	197
BstKTI	GATC	6 cut(s)	81, 112, 221, 391, 485, 749
BstMAI	GTCTC	2 cut(s)	9, 157
BstMBI	GATC	6 cut(s)	78, 109, 218, 388, 482, 746
BstMCI	CGRYCG	1 cut(s)	81
BstMWI	GCNNNNNNNGC	5 cut(s)	164, 242, 506, 540, 861
BstNI	CCWGG	1 cut(s)	653
BstSCI	CCNGG	4 cut(s)	119, 187, 420, 651
BstSLI	GKGCMC	1 cut(s)	189
BstUI	CGCG	1 cut(s)	822
BstV1I	GCAGC	4 cut(s)	235, 291, 294, 512
BstX2I	RGATCY	2 cut(s)	218, 388
BstYI	RGATCY	2 cut(s)	218, 388
BsuI	GTATCC	1 cut(s)	881
BsuRI	GGCC	1 cut(s)	651
BtgZI	GCGATG	2 cut(s)	456, 491
BtrI	CACGTC	1 cut(s)	366
BtsCI	GGATG	1 cut(s)	439
BtsI	GCAGTG	2 cut(s)	541, 565
BtsIMutI	CAGTG	2 cut(s)	541, 565
Cac8I	GCNNGC	3 cut(s)	335, 725, 817
CfoI	GCGC	1 cut(s)	197
Cfr10I	RCCGGY	1 cut(s)	688
Cfr13I	GGNCC	1 cut(s)	649
CseI	GACGC	1 cut(s)	492
Csp6I	GTAC	1 cut(s)	401
CspAI	ACCGGT	1 cut(s)	688
CspCI	CAANNNNNGTGG	4 cut(s)	532, 567, 624, 659
CviAII	CATG	4 cut(s)	266, 612, 861, 884
CviQI	GTAC	1 cut(s)	401
DdeI	CTNAG	1 cut(s)	213
DinI	GGCGCC	1 cut(s)	196
DpnI	GATC	6 cut(s)	80, 111, 220, 390, 484, 748
DpnII	GATC	6 cut(s)	78, 109, 218, 388, 482, 746
Eam1104I	CTCTTC	5 cut(s)	105, 121, 614, 830, 909
EarI	CTCTTC	5 cut(s)	105, 121, 614, 830, 909
EcoRII	CCWGG	1 cut(s)	651
EcoT22I	ATGCAT	1 cut(s)	866
EgeI	GGCGCC	1 cut(s)	196
EheI	GGCGCC	1 cut(s)	196
FaeI	CATG	4 cut(s)	269, 615, 864, 887
FaiI	YATR	9 cut(s)	169, 171, 208, 267, 613, 862, 866, 885, 911
FaqI	GGGAC	1 cut(s)	599
FatI	CATG	4 cut(s)	265, 611, 860, 883
FauNDI	CATATG	1 cut(s)	169
FblI	GTMKAC	1 cut(s)	794
Fnu4HI	GCNGC	8 cut(s)	246, 249, 263, 283, 305, 501, 556, 820
FokI	GGATG	1 cut(s)	446
Fsp4HI	GCNGC	8 cut(s)	246, 249, 263, 283, 305, 501, 556, 820
FspBI	CTAG	2 cut(s)	57, 807
GlaI	GCGC	1 cut(s)	196
GluI	GCNGC	8 cut(s)	246, 249, 263, 283, 305, 501, 556, 820
HaeII	RGCGCY	1 cut(s)	198
HaeIII	GGCC	1 cut(s)	651
HapII	CCGG	4 cut(s)	120, 189, 421, 689
HgaI	GACGC	1 cut(s)	492
HhaI	GCGC	1 cut(s)	197
Hin1I	GRCGYC	1 cut(s)	195
Hin1II	CATG	4 cut(s)	269, 615, 864, 887
Hin6I	GCGC	1 cut(s)	195
HinP1I	GCGC	1 cut(s)	195
HindIII	AAGCTT	1 cut(s)	672
HinfI	GANTC	4 cut(s)	16, 150, 275, 712
HpaII	CCGG	4 cut(s)	120, 189, 421, 689
HphI	GGTGA	2 cut(s)	392, 499
Hpy166II	GTNNAC	3 cut(s)	71, 134, 795
Hpy188I	TCNGA	7 cut(s)	15, 83, 109, 214, 240, 660, 746
Hpy188III	TCNNGA	3 cut(s)	458, 514, 575
Hpy8I	GTNNAC	3 cut(s)	71, 134, 795
Hpy99I	CGWCG	3 cut(s)	370, 413, 508
HpyAV	CCTTC	4 cut(s)	119, 315, 769, 871
HpyCH4III	ACNGT	4 cut(s)	405, 551, 590, 799
HpyCH4IV	ACGT	1 cut(s)	365
HpyCH4V	TGCA	8 cut(s)	167, 251, 534, 681, 787, 855, 864, 932
HpyF10VI	GCNNNNNNNGC	5 cut(s)	164, 242, 506, 540, 861
HpyF3I	CTNAG	1 cut(s)	213
HpySE526I	ACGT	1 cut(s)	365
Hsp92I	GRCGYC	1 cut(s)	195
Hsp92II	CATG	4 cut(s)	269, 615, 864, 887
HspAI	GCGC	1 cut(s)	195
KasI	GGCGCC	1 cut(s)	194
Kzo9I	GATC	6 cut(s)	78, 109, 218, 388, 482, 746
LguI	GCTCTTC	1 cut(s)	121
LmnI	GCTCC	3 cut(s)	473, 757, 829
Lsp1109I	GCAGC	4 cut(s)	235, 291, 294, 512
LweI	GCATC	3 cut(s)	403, 507, 589
MaeI	CTAG	2 cut(s)	57, 807
MaeII	ACGT	1 cut(s)	365
MalI	GATC	6 cut(s)	80, 111, 220, 390, 484, 748
MboI	GATC	6 cut(s)	78, 109, 218, 388, 482, 746
MboII	GAAGA	7 cut(s)	92, 108, 170, 350, 631, 847, 926
MflI	RGATCY	2 cut(s)	218, 388
MhlI	GDGCHC	2 cut(s)	189, 238
MluCI	AATT	2 cut(s)	383, 927
Mly113I	GGCGCC	1 cut(s)	195
MlyI	GAGTC	3 cut(s)	10, 159, 284
MnlI	CCTC	9 cut(s)	185, 208, 424, 678, 713, 772, 814, 831, 895
Mph1103I	ATGCAT	1 cut(s)	866
MseI	TTAA	1 cut(s)	699
MspA1I	CMGCKG	1 cut(s)	39
MspI	CCGG	4 cut(s)	120, 189, 421, 689
MspR9I	CCNGG	4 cut(s)	121, 189, 422, 653
MvaI	CCWGG	1 cut(s)	653
MvnI	CGCG	1 cut(s)	822
MwoI	GCNNNNNNNGC	5 cut(s)	164, 242, 506, 540, 861
NarI	GGCGCC	1 cut(s)	195
NciI	CCSGG	3 cut(s)	121, 189, 422
NdeI	CATATG	1 cut(s)	169
NdeII	GATC	6 cut(s)	78, 109, 218, 388, 482, 746
NlaIII	CATG	4 cut(s)	269, 615, 864, 887
NlaIV	GGNNCC	4 cut(s)	186, 196, 633, 801
NsiI	ATGCAT	1 cut(s)	866
PciSI	GCTCTTC	1 cut(s)	121
PcsI	WCGNNNNNNNCGW	1 cut(s)	145
PfeI	GAWTC	1 cut(s)	712
PinAI	ACCGGT	1 cut(s)	688
PkrI	GCNGC	8 cut(s)	247, 250, 264, 284, 306, 502, 557, 821
Ple19I	CGATCG	1 cut(s)	81
PleI	GAGTC	3 cut(s)	10, 158, 283
PluTI	GGCGCC	1 cut(s)	198
PpsI	GAGTC	3 cut(s)	10, 158, 283
Psp6I	CCWGG	1 cut(s)	651
PspGI	CCWGG	1 cut(s)	651
PspN4I	GGNNCC	4 cut(s)	186, 196, 633, 801
PspPI	GGNCC	1 cut(s)	649
PsuI	RGATCY	2 cut(s)	218, 388
PvuI	CGATCG	1 cut(s)	81
RsaI	GTAC	1 cut(s)	402
RsaNI	GTAC	1 cut(s)	401
SapI	GCTCTTC	1 cut(s)	121
SaqAI	TTAA	1 cut(s)	699
SatI	GCNGC	8 cut(s)	246, 249, 263, 283, 305, 501, 556, 820
Sau3AI	GATC	6 cut(s)	78, 109, 218, 388, 482, 746
Sau96I	GGNCC	1 cut(s)	649
SchI	GAGTC	3 cut(s)	10, 159, 284
ScrFI	CCNGG	4 cut(s)	121, 189, 422, 653
SduI	GDGCHC	2 cut(s)	189, 238
SetI	ASST	7 cut(s)	76, 90, 130, 368, 676, 705, 906
SfaNI	GCATC	3 cut(s)	403, 507, 589
SfoI	GGCGCC	1 cut(s)	196
SmlI	CTYRAG	1 cut(s)	669
SmoI	CTYRAG	1 cut(s)	669
Sse9I	AATT	2 cut(s)	383, 927
SsiI	CCGC	8 cut(s)	37, 66, 245, 262, 428, 509, 555, 820
SspDI	GGCGCC	1 cut(s)	194
SspMI	CTAG	2 cut(s)	57, 807
StyD4I	CCNGG	4 cut(s)	119, 187, 420, 651
TaaI	ACNGT	4 cut(s)	405, 551, 590, 799
TaiI	ACGT	1 cut(s)	368
TaqI	TCGA	3 cut(s)	148, 273, 411
TasI	AATT	2 cut(s)	383, 927
TauI	GCSGC	4 cut(s)	248, 265, 558, 822
TfiI	GAWTC	1 cut(s)	712
Tru1I	TTAA	1 cut(s)	699
Tru9I	TTAA	1 cut(s)	699
TscAI	CASTG	2 cut(s)	541, 565
TseI	GCWGC	4 cut(s)	248, 282, 304, 500
TspDTI	ATGAA	2 cut(s)	134, 600
TspRI	CASTG	2 cut(s)	541, 565
XmiI	GTMKAC	1 cut(s)	794
XspI	CTAG	2 cut(s)	57, 807
Zsp2I	ATGCAT	1 cut(s)	866

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.