RLG00000024869

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000739
Physical Location & Seq
Forward (+)
39920082 .. 39923999
3918 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024869

Sequence Viewer

Length: 684 bp
ATGACCAATCTGCGGCTCCCGAATGCCGACGGTAAACCTACGATCGAAACTGTGAGATGTTCTCTTCTCTCTGATCGTTCTTCCGGGGACGACGGTGGGTTTCGACTTCATCGAGTTGCTGAGGTTGCTGCATTTGGTAATCTTCTGGTGACCGGAGGCGTCTTTGCCTTCTGGCTAGGGGGATATCTCGGTGGTGGTGCTCTGATGGCTGCTGTGAAGGCGGTGCGGCATGGTCTCAAGTCTAGCAGCGAGGTGGCTTTATCTGGGTGGCTCGTTGACGGTGGAAGGGATGAGAGCGAGCCTTTTGGCTGTTTCATGTTTCTACCCATGTCGTTCGACCCGGGTGGATTGGATCTGGTATTGACCGTGTTTGGCGGTGCTGTCCGGGTCGCGGAGGATAGCGGTGATGTGGTAGCTGGTTTGGACGATTGTTGGGAGGAATTGGATTTCGATCTACTTTGTTTCCAAGCTGCAACACTGGCGTCTGGTGGGCTTCGTCGATTTGGCTTTTGGGTGAACTCCAACCTGTTTAATGTTAGGGTTTTGCTTGAGACTCAGAGTATGGGGCTCATGGGTGGTCGGAGAAGCTTCGCCGGCGACATCTGGGATCAAAATGACGTGGTCATGGTGGCGCCAAAACGACATTGTTGTGGTTGGGATCGTAGCTGTAGCCACTGTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

228

Amino Acids

24.32

Weight (kDa)

4.93

Isoelectric Point (pI)

47.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 631
AccII CGCG 1 cut(s) 392
AciI CCGC 6 cut(s) 13, 221, 226, 375, 392, 402
AclWI GGATC 3 cut(s) 360, 615, 666
AcyI GRCGYC 3 cut(s) 159, 482, 632
AfiI CCNNNNNNNGG 2 cut(s) 12, 391
AjiI CACGTC 1 cut(s) 619
AluBI AGCT 4 cut(s) 416, 470, 588, 666
AluI AGCT 4 cut(s) 416, 470, 588, 666
Alw21I GWGCWC 1 cut(s) 202
Alw26I GTCTC 2 cut(s) 239, 545
AlwI GGATC 3 cut(s) 360, 615, 666
Ama87I CYCGRG 1 cut(s) 340
ApeKI GCWGC 4 cut(s) 128, 209, 246, 470
AspLEI GCGC 1 cut(s) 634
AsuC2I CCSGG 4 cut(s) 85, 341, 342, 386
AsuHPI GGTGA 3 cut(s) 160, 416, 526
AvaI CYCGRG 1 cut(s) 340
BanI GGYRCC 1 cut(s) 631
BanII GRGCYC 1 cut(s) 570
Bbv12I GWGCWC 1 cut(s) 202
BbvCI CCTCAGC 1 cut(s) 120
BbvI GCAGC 4 cut(s) 115, 196, 258, 457
BccI CCATC 1 cut(s) 199
BcnI CCSGG 4 cut(s) 85, 341, 342, 386
BcoDI GTCTC 2 cut(s) 239, 545
BfaI CTAG 2 cut(s) 176, 243
BfmI CTRYAG 1 cut(s) 667
BfoI RGCGCY 1 cut(s) 635
BisI GCNGC 6 cut(s) 14, 129, 210, 227, 247, 471
BlsI GCNGC 6 cut(s) 15, 130, 211, 228, 248, 472
Bme1390I CCNGG 4 cut(s) 85, 341, 342, 386
BmeT110I CYCGRG 1 cut(s) 340
BmgBI CACGTC 1 cut(s) 619
BmiI GGNNCC 2 cut(s) 17, 633
BmrFI CCNGG 4 cut(s) 85, 341, 342, 386
BplI GAGNNNNNCTC 2 cut(s) 46, 78
Bpu10I CCTNAGC 1 cut(s) 120
BpuEI CTTGAG 2 cut(s) 221, 569
BpuMI CCSGG 4 cut(s) 85, 341, 342, 386
BsaBI GATNNNNATC 1 cut(s) 450
BsaHI GRCGYC 3 cut(s) 159, 482, 632
BsaI GGTCTC 1 cut(s) 239
BsaJI CCNNGG 2 cut(s) 84, 340
BsaWI WCCGGW 1 cut(s) 152
Bsc4I CCNNNNNNNGG 2 cut(s) 12, 391
Bse118I RCCGGY 1 cut(s) 593
Bse1I ACTGG 1 cut(s) 483
Bse8I GATNNNNATC 1 cut(s) 450
BseDI CCNNGG 2 cut(s) 84, 340
BseGI GGATG 1 cut(s) 295
BseJI GATNNNNATC 1 cut(s) 450
BseLI CCNNNNNNNGG 2 cut(s) 12, 391
BseMII CTCAG 2 cut(s) 111, 569
BseNI ACTGG 1 cut(s) 483
BseXI GCAGC 4 cut(s) 115, 196, 258, 457
Bsh1236I CGCG 1 cut(s) 392
Bsh1285I CGRYCG 1 cut(s) 45
BshNI GGYRCC 1 cut(s) 631
BsiEI CGRYCG 1 cut(s) 45
BsiHKAI GWGCWC 1 cut(s) 202
BsiHKCI CYCGRG 1 cut(s) 340
BsiSI CCGG 5 cut(s) 84, 153, 341, 385, 594
BslFI GGGAC 1 cut(s) 101
BslI CCNNNNNNNGG 2 cut(s) 12, 391
BsmAI GTCTC 2 cut(s) 239, 545
BsmFI GGGAC 1 cut(s) 101
BsmI GAATGC 1 cut(s) 28
Bso31I GGTCTC 1 cut(s) 239
BsoBI CYCGRG 1 cut(s) 340
Bsp1286I GDGCHC 2 cut(s) 202, 570
Bsp143I GATC 6 cut(s) 42, 73, 352, 451, 607, 658
BspACI CCGC 6 cut(s) 13, 221, 226, 375, 392, 402
BspCNI CTCAG 2 cut(s) 112, 568
BspFNI CGCG 1 cut(s) 392
BspLI GGNNCC 2 cut(s) 17, 633
BspPI GGATC 3 cut(s) 360, 615, 666
BspT107I GGYRCC 1 cut(s) 631
BspTNI GGTCTC 1 cut(s) 239
BsrFI RCCGGY 1 cut(s) 593
BsrI ACTGG 1 cut(s) 483
BssAI RCCGGY 1 cut(s) 593
BssECI CCNNGG 2 cut(s) 84, 340
BssMI GATC 6 cut(s) 42, 73, 352, 451, 607, 658
BssNI GRCGYC 3 cut(s) 159, 482, 632
Bst4CI ACNGT 6 cut(s) 32, 52, 95, 281, 367, 677
Bst6I CTCTTC 1 cut(s) 69
BstACI GRCGYC 3 cut(s) 159, 482, 632
BstC8I GCNNGC 2 cut(s) 299, 595
BstDEI CTNAG 2 cut(s) 120, 555
BstEII GGTNACC 1 cut(s) 148
BstF5I GGATG 1 cut(s) 295
BstFNI CGCG 1 cut(s) 392
BstH2I RGCGCY 1 cut(s) 635
BstHHI GCGC 1 cut(s) 634
BstKTI GATC 6 cut(s) 45, 76, 355, 454, 610, 661
BstMAI GTCTC 2 cut(s) 239, 545
BstMBI GATC 6 cut(s) 42, 73, 352, 451, 607, 658
BstMCI CGRYCG 1 cut(s) 45
BstMWI GCNNNNNNNGC 5 cut(s) 125, 206, 218, 479, 594
BstPI GGTNACC 1 cut(s) 148
BstSCI CCNGG 4 cut(s) 83, 339, 340, 384
BstSFI CTRYAG 1 cut(s) 667
BstUI CGCG 1 cut(s) 392
BstV1I GCAGC 4 cut(s) 115, 196, 258, 457
BstX2I RGATCY 1 cut(s) 352
BstYI RGATCY 1 cut(s) 352
BtrI CACGTC 1 cut(s) 619
BtsCI GGATG 1 cut(s) 295
BtsIMutI CAGTG 2 cut(s) 476, 673
Cac8I GCNNGC 2 cut(s) 299, 595
CfoI GCGC 1 cut(s) 634
Cfr10I RCCGGY 1 cut(s) 593
Cfr9I CCCGGG 1 cut(s) 340
CseI GACGC 2 cut(s) 148, 471
CviAII CATG 5 cut(s) 230, 316, 328, 571, 625
DdeI CTNAG 2 cut(s) 120, 555
DinI GGCGCC 1 cut(s) 633
DpnI GATC 6 cut(s) 44, 75, 354, 453, 609, 660
DpnII GATC 6 cut(s) 42, 73, 352, 451, 607, 658
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
Eco24I GRGCYC 1 cut(s) 570
Eco31I GGTCTC 1 cut(s) 239
Eco32I GATATC 1 cut(s) 185
Eco88I CYCGRG 1 cut(s) 340
Eco91I GGTNACC 1 cut(s) 148
EcoO65I GGTNACC 1 cut(s) 148
EcoRV GATATC 1 cut(s) 185
EcoT38I GRGCYC 1 cut(s) 570
EgeI GGCGCC 1 cut(s) 633
EheI GGCGCC 1 cut(s) 633
FaeI CATG 5 cut(s) 233, 319, 331, 574, 628
FaiI YATR 7 cut(s) 231, 317, 329, 563, 572, 626, 682
FaqI GGGAC 1 cut(s) 101
FatI CATG 5 cut(s) 229, 315, 327, 570, 624
Fnu4HI GCNGC 6 cut(s) 14, 129, 210, 227, 247, 471
FokI GGATG 1 cut(s) 302
FriOI GRGCYC 1 cut(s) 570
Fsp4HI GCNGC 6 cut(s) 14, 129, 210, 227, 247, 471
FspBI CTAG 2 cut(s) 176, 243
GlaI GCGC 1 cut(s) 633
GluI GCNGC 6 cut(s) 14, 129, 210, 227, 247, 471
HaeII RGCGCY 1 cut(s) 635
HapII CCGG 5 cut(s) 84, 153, 341, 385, 594
HgaI GACGC 2 cut(s) 148, 471
HhaI GCGC 1 cut(s) 634
Hin1I GRCGYC 3 cut(s) 159, 482, 632
Hin1II CATG 5 cut(s) 233, 319, 331, 574, 628
Hin6I GCGC 1 cut(s) 632
HinP1I GCGC 1 cut(s) 632
HincII GTYRAC 1 cut(s) 277
HindII GTYRAC 1 cut(s) 277
HindIII AAGCTT 1 cut(s) 586
HinfI GANTC 1 cut(s) 553
HpaII CCGG 5 cut(s) 84, 153, 341, 385, 594
HphI GGTGA 3 cut(s) 160, 416, 526
Hpy166II GTNNAC 3 cut(s) 35, 277, 517
Hpy188I TCNGA 4 cut(s) 73, 204, 558, 582
Hpy188III TCNNGA 1 cut(s) 19
Hpy8I GTNNAC 3 cut(s) 35, 277, 517
Hpy99I CGWCG 3 cut(s) 32, 95, 501
HpyAV CCTTC 3 cut(s) 178, 211, 279
HpyCH4III ACNGT 6 cut(s) 32, 52, 95, 281, 367, 677
HpyCH4IV ACGT 1 cut(s) 618
HpyCH4V TGCA 3 cut(s) 131, 473, 680
HpyF10VI GCNNNNNNNGC 5 cut(s) 125, 206, 218, 479, 594
HpyF3I CTNAG 2 cut(s) 120, 555
HpySE526I ACGT 1 cut(s) 618
Hsp92I GRCGYC 3 cut(s) 159, 482, 632
Hsp92II CATG 5 cut(s) 233, 319, 331, 574, 628
HspAI GCGC 1 cut(s) 632
KasI GGCGCC 1 cut(s) 631
KroI GCCGGC 1 cut(s) 593
KroNI GCCGGC 1 cut(s) 595
Kzo9I GATC 6 cut(s) 42, 73, 352, 451, 607, 658
LmnI GCTCC 1 cut(s) 21
Lsp1109I GCAGC 4 cut(s) 115, 196, 258, 457
MaeI CTAG 2 cut(s) 176, 243
MaeII ACGT 1 cut(s) 618
MaeIII GTNAC 1 cut(s) 148
MalI GATC 6 cut(s) 44, 75, 354, 453, 609, 660
MboI GATC 6 cut(s) 42, 73, 352, 451, 607, 658
MboII GAAGA 3 cut(s) 56, 72, 134
MflI RGATCY 1 cut(s) 352
MhlI GDGCHC 2 cut(s) 202, 570
MluCI AATT 1 cut(s) 440
Mly113I GGCGCC 1 cut(s) 632
MlyI GAGTC 1 cut(s) 547
MmeI TCCRAC 2 cut(s) 546, 560
MnlI CCTC 5 cut(s) 115, 149, 244, 388, 430
MreI CGCCGGCG 1 cut(s) 593
MroNI GCCGGC 1 cut(s) 593
MseI TTAA 1 cut(s) 531
MslI CAYNNNNRTG 1 cut(s) 648
MspI CCGG 5 cut(s) 84, 153, 341, 385, 594
MspR9I CCNGG 4 cut(s) 85, 341, 342, 386
Mva1269I GAATGC 1 cut(s) 28
MvnI CGCG 1 cut(s) 392
MwoI GCNNNNNNNGC 5 cut(s) 125, 206, 218, 479, 594
NaeI GCCGGC 1 cut(s) 595
NarI GGCGCC 1 cut(s) 632
NciI CCSGG 4 cut(s) 85, 341, 342, 386
NdeII GATC 6 cut(s) 42, 73, 352, 451, 607, 658
NgoMIV GCCGGC 1 cut(s) 593
NlaIII CATG 5 cut(s) 233, 319, 331, 574, 628
NlaIV GGNNCC 2 cut(s) 17, 633
NmuCI GTSAC 1 cut(s) 148
PcsI WCGNNNNNNNCGW 1 cut(s) 109
PctI GAATGC 1 cut(s) 28
PdiI GCCGGC 1 cut(s) 595
PflFI GACNNNGTC 1 cut(s) 620
PkrI GCNGC 6 cut(s) 15, 130, 211, 228, 248, 472
Ple19I CGATCG 1 cut(s) 45
PleI GAGTC 1 cut(s) 547
PluTI GGCGCC 1 cut(s) 635
PpsI GAGTC 1 cut(s) 547
PspEI GGTNACC 1 cut(s) 148
PspN4I GGNNCC 2 cut(s) 17, 633
PsuI RGATCY 1 cut(s) 352
PsyI GACNNNGTC 1 cut(s) 620
PvuI CGATCG 1 cut(s) 45
RseI CAYNNNNRTG 1 cut(s) 648
SaqAI TTAA 1 cut(s) 531
SatI GCNGC 6 cut(s) 14, 129, 210, 227, 247, 471
Sau3AI GATC 6 cut(s) 42, 73, 352, 451, 607, 658
SchI GAGTC 1 cut(s) 547
ScrFI CCNGG 4 cut(s) 85, 341, 342, 386
SduI GDGCHC 2 cut(s) 202, 570
SetI ASST 9 cut(s) 40, 126, 255, 418, 472, 528, 590, 621, 668
SfcI CTRYAG 1 cut(s) 667
SfoI GGCGCC 1 cut(s) 633
SgrAI CRCCGGYG 1 cut(s) 593
SmaI CCCGGG 1 cut(s) 342
SmiMI CAYNNNNRTG 1 cut(s) 648
SmlI CTYRAG 2 cut(s) 236, 548
SmoI CTYRAG 2 cut(s) 236, 548
Sse9I AATT 1 cut(s) 440
SsiI CCGC 6 cut(s) 13, 221, 226, 375, 392, 402
SspDI GGCGCC 1 cut(s) 631
SspMI CTAG 2 cut(s) 176, 243
StyD4I CCNGG 4 cut(s) 83, 339, 340, 384
TaaI ACNGT 6 cut(s) 32, 52, 95, 281, 367, 677
TaiI ACGT 1 cut(s) 621
TaqI TCGA 6 cut(s) 45, 103, 112, 336, 450, 499
TasI AATT 1 cut(s) 440
TauI GCSGC 2 cut(s) 16, 229
Tru1I TTAA 1 cut(s) 531
Tru9I TTAA 1 cut(s) 531
TscAI CASTG 2 cut(s) 483, 680
TseFI GTSAC 1 cut(s) 148
TseI GCWGC 4 cut(s) 128, 209, 246, 470
Tsp45I GTSAC 1 cut(s) 148
TspDTI ATGAA 2 cut(s) 98, 304
TspMI CCCGGG 1 cut(s) 340
TspRI CASTG 2 cut(s) 483, 680
Tth111I GACNNNGTC 1 cut(s) 620
XmaI CCCGGG 1 cut(s) 340
XspI CTAG 2 cut(s) 176, 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.